Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS13560 and RR42_RS13565 are separated by 282 nucleotides RR42_RS13565 and RR42_RS13570 are separated by 192 nucleotides
RR42_RS13560: RR42_RS13560 - propionyl-CoA synthetase, at 2,928,107 to 2,929,999
_RS13560
RR42_RS13565: RR42_RS13565 - lytic transglycosylase, at 2,930,282 to 2,931,973
_RS13565
RR42_RS13570: RR42_RS13570 - hydroxyacylglutathione hydrolase, at 2,932,166 to 2,932,969
_RS13570
Position (kb)
2930
2931
2932 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2929.282 kb on - strand, within RR42_RS13560 at 2929.282 kb on - strand, within RR42_RS13560 at 2929.290 kb on + strand, within RR42_RS13560 at 2929.290 kb on + strand, within RR42_RS13560 at 2929.291 kb on - strand, within RR42_RS13560 at 2929.362 kb on + strand, within RR42_RS13560 at 2929.363 kb on - strand, within RR42_RS13560 at 2929.656 kb on + strand, within RR42_RS13560 at 2929.656 kb on + strand, within RR42_RS13560 at 2929.657 kb on - strand, within RR42_RS13560 at 2929.657 kb on - strand, within RR42_RS13560 at 2929.679 kb on + strand, within RR42_RS13560 at 2929.679 kb on + strand, within RR42_RS13560 at 2929.741 kb on - strand, within RR42_RS13560 at 2929.746 kb on + strand, within RR42_RS13560 at 2929.746 kb on + strand, within RR42_RS13560 at 2929.746 kb on + strand, within RR42_RS13560 at 2929.747 kb on - strand, within RR42_RS13560 at 2929.779 kb on + strand, within RR42_RS13560 at 2929.779 kb on + strand, within RR42_RS13560 at 2929.779 kb on + strand, within RR42_RS13560 at 2929.779 kb on + strand, within RR42_RS13560 at 2929.779 kb on + strand, within RR42_RS13560 at 2929.779 kb on + strand, within RR42_RS13560 at 2929.779 kb on + strand, within RR42_RS13560 at 2929.779 kb on + strand, within RR42_RS13560 at 2929.780 kb on - strand, within RR42_RS13560 at 2929.780 kb on - strand, within RR42_RS13560 at 2929.780 kb on - strand, within RR42_RS13560 at 2929.780 kb on - strand, within RR42_RS13560 at 2930.195 kb on + strand at 2930.196 kb on - strand at 2930.206 kb on + strand at 2930.661 kb on + strand, within RR42_RS13565 at 2930.661 kb on + strand, within RR42_RS13565 at 2930.686 kb on + strand, within RR42_RS13565 at 2930.686 kb on + strand, within RR42_RS13565 at 2930.687 kb on - strand, within RR42_RS13565 at 2930.884 kb on + strand, within RR42_RS13565 at 2930.964 kb on + strand, within RR42_RS13565 at 2930.964 kb on + strand, within RR42_RS13565 at 2930.965 kb on - strand, within RR42_RS13565 at 2930.965 kb on - strand, within RR42_RS13565 at 2930.979 kb on + strand, within RR42_RS13565 at 2930.979 kb on + strand, within RR42_RS13565 at 2930.980 kb on - strand, within RR42_RS13565 at 2930.980 kb on - strand, within RR42_RS13565 at 2931.189 kb on + strand, within RR42_RS13565 at 2931.189 kb on + strand, within RR42_RS13565 at 2931.189 kb on + strand, within RR42_RS13565 at 2931.189 kb on + strand, within RR42_RS13565 at 2931.189 kb on + strand, within RR42_RS13565 at 2931.190 kb on - strand, within RR42_RS13565 at 2931.190 kb on - strand, within RR42_RS13565 at 2931.240 kb on + strand, within RR42_RS13565 at 2931.240 kb on + strand, within RR42_RS13565 at 2931.240 kb on + strand, within RR42_RS13565 at 2931.241 kb on - strand, within RR42_RS13565 at 2931.241 kb on - strand, within RR42_RS13565 at 2931.243 kb on + strand, within RR42_RS13565 at 2931.276 kb on + strand, within RR42_RS13565 at 2931.277 kb on - strand, within RR42_RS13565 at 2931.343 kb on + strand, within RR42_RS13565 at 2931.343 kb on + strand, within RR42_RS13565 at 2931.343 kb on + strand, within RR42_RS13565 at 2931.343 kb on + strand, within RR42_RS13565 at 2931.343 kb on + strand, within RR42_RS13565 at 2931.343 kb on + strand, within RR42_RS13565 at 2931.344 kb on - strand, within RR42_RS13565 at 2931.345 kb on + strand, within RR42_RS13565 at 2931.345 kb on + strand, within RR42_RS13565 at 2931.345 kb on + strand, within RR42_RS13565 at 2931.345 kb on + strand, within RR42_RS13565 at 2931.346 kb on - strand, within RR42_RS13565 at 2931.346 kb on - strand, within RR42_RS13565 at 2931.346 kb on - strand, within RR42_RS13565 at 2931.384 kb on + strand, within RR42_RS13565 at 2931.385 kb on - strand, within RR42_RS13565 at 2931.385 kb on - strand, within RR42_RS13565 at 2931.385 kb on - strand, within RR42_RS13565 at 2931.385 kb on - strand, within RR42_RS13565 at 2931.471 kb on + strand, within RR42_RS13565 at 2931.472 kb on - strand, within RR42_RS13565 at 2931.472 kb on - strand, within RR42_RS13565 at 2931.618 kb on + strand, within RR42_RS13565 at 2931.619 kb on - strand, within RR42_RS13565 at 2931.657 kb on + strand, within RR42_RS13565 at 2931.657 kb on + strand, within RR42_RS13565 at 2931.657 kb on + strand, within RR42_RS13565 at 2931.657 kb on + strand, within RR42_RS13565 at 2931.658 kb on - strand, within RR42_RS13565 at 2931.658 kb on - strand, within RR42_RS13565 at 2931.658 kb on - strand, within RR42_RS13565 at 2931.675 kb on + strand, within RR42_RS13565 at 2931.676 kb on - strand, within RR42_RS13565 at 2931.947 kb on + strand at 2931.957 kb on - strand at 2931.957 kb on - strand at 2932.083 kb on + strand at 2932.388 kb on - strand, within RR42_RS13570 at 2932.432 kb on - strand, within RR42_RS13570 at 2932.432 kb on - strand, within RR42_RS13570 at 2932.447 kb on - strand, within RR42_RS13570 at 2932.549 kb on + strand, within RR42_RS13570 at 2932.550 kb on - strand, within RR42_RS13570 at 2932.596 kb on + strand, within RR42_RS13570 at 2932.596 kb on + strand, within RR42_RS13570 at 2932.597 kb on - strand, within RR42_RS13570 at 2932.820 kb on + strand, within RR42_RS13570 at 2932.820 kb on + strand, within RR42_RS13570 at 2932.820 kb on + strand, within RR42_RS13570 at 2932.820 kb on + strand, within RR42_RS13570 at 2932.820 kb on + strand, within RR42_RS13570 at 2932.820 kb on + strand, within RR42_RS13570 at 2932.820 kb on + strand, within RR42_RS13570 at 2932.820 kb on + strand, within RR42_RS13570 at 2932.821 kb on - strand, within RR42_RS13570 at 2932.821 kb on - strand, within RR42_RS13570 at 2932.821 kb on - strand, within RR42_RS13570 at 2932.825 kb on + strand, within RR42_RS13570 at 2932.826 kb on - strand, within RR42_RS13570 at 2932.927 kb on + strand at 2932.929 kb on + strand at 2932.929 kb on + strand at 2932.929 kb on + strand at 2932.929 kb on + strand at 2932.929 kb on + strand at 2932.929 kb on + strand at 2932.929 kb on + strand at 2932.929 kb on + strand at 2932.929 kb on + strand at 2932.929 kb on + strand at 2932.933 kb on + strand at 2932.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 2,929,282 - RR42_RS13560 0.62 +3.0 2,929,282 - RR42_RS13560 0.62 +0.7 2,929,290 + RR42_RS13560 0.62 +0.2 2,929,290 + RR42_RS13560 0.62 -1.5 2,929,291 - RR42_RS13560 0.63 -0.3 2,929,362 + RR42_RS13560 0.66 +0.2 2,929,363 - RR42_RS13560 0.66 -1.3 2,929,656 + RR42_RS13560 0.82 -0.2 2,929,656 + RR42_RS13560 0.82 -1.4 2,929,657 - RR42_RS13560 0.82 +1.9 2,929,657 - RR42_RS13560 0.82 -1.6 2,929,679 + RR42_RS13560 0.83 +0.3 2,929,679 + RR42_RS13560 0.83 +0.0 2,929,741 - RR42_RS13560 0.86 -2.5 2,929,746 + RR42_RS13560 0.87 +0.6 2,929,746 + RR42_RS13560 0.87 -0.4 2,929,746 + RR42_RS13560 0.87 +0.1 2,929,747 - RR42_RS13560 0.87 -0.1 2,929,779 + RR42_RS13560 0.88 -0.1 2,929,779 + RR42_RS13560 0.88 +0.3 2,929,779 + RR42_RS13560 0.88 +0.3 2,929,779 + RR42_RS13560 0.88 +0.4 2,929,779 + RR42_RS13560 0.88 +1.3 2,929,779 + RR42_RS13560 0.88 -0.3 2,929,779 + RR42_RS13560 0.88 -0.6 2,929,779 + RR42_RS13560 0.88 -0.5 2,929,780 - RR42_RS13560 0.88 -0.1 2,929,780 - RR42_RS13560 0.88 -1.9 2,929,780 - RR42_RS13560 0.88 +0.5 2,929,780 - RR42_RS13560 0.88 +0.2 2,930,195 + -2.6 2,930,196 - +0.2 2,930,206 + +0.1 2,930,661 + RR42_RS13565 0.22 +1.3 2,930,661 + RR42_RS13565 0.22 -1.6 2,930,686 + RR42_RS13565 0.24 -1.7 2,930,686 + RR42_RS13565 0.24 -1.3 2,930,687 - RR42_RS13565 0.24 -0.6 2,930,884 + RR42_RS13565 0.36 -0.5 2,930,964 + RR42_RS13565 0.40 -0.3 2,930,964 + RR42_RS13565 0.40 -2.3 2,930,965 - RR42_RS13565 0.40 -0.5 2,930,965 - RR42_RS13565 0.40 -1.8 2,930,979 + RR42_RS13565 0.41 -2.3 2,930,979 + RR42_RS13565 0.41 -2.2 2,930,980 - RR42_RS13565 0.41 +1.3 2,930,980 - RR42_RS13565 0.41 +0.9 2,931,189 + RR42_RS13565 0.54 -2.3 2,931,189 + RR42_RS13565 0.54 -0.7 2,931,189 + RR42_RS13565 0.54 -2.1 2,931,189 + RR42_RS13565 0.54 -1.7 2,931,189 + RR42_RS13565 0.54 -0.6 2,931,190 - RR42_RS13565 0.54 -1.5 2,931,190 - RR42_RS13565 0.54 -0.8 2,931,240 + RR42_RS13565 0.57 -1.3 2,931,240 + RR42_RS13565 0.57 +0.7 2,931,240 + RR42_RS13565 0.57 -2.2 2,931,241 - RR42_RS13565 0.57 -1.5 2,931,241 - RR42_RS13565 0.57 -1.4 2,931,243 + RR42_RS13565 0.57 -0.7 2,931,276 + RR42_RS13565 0.59 -1.5 2,931,277 - RR42_RS13565 0.59 -1.1 2,931,343 + RR42_RS13565 0.63 -1.9 2,931,343 + RR42_RS13565 0.63 -2.4 2,931,343 + RR42_RS13565 0.63 -0.3 2,931,343 + RR42_RS13565 0.63 -2.5 2,931,343 + RR42_RS13565 0.63 -1.5 2,931,343 + RR42_RS13565 0.63 -2.3 2,931,344 - RR42_RS13565 0.63 -1.3 2,931,345 + RR42_RS13565 0.63 -2.8 2,931,345 + RR42_RS13565 0.63 -2.0 2,931,345 + RR42_RS13565 0.63 -0.9 2,931,345 + RR42_RS13565 0.63 -2.5 2,931,346 - RR42_RS13565 0.63 -1.4 2,931,346 - RR42_RS13565 0.63 -1.5 2,931,346 - RR42_RS13565 0.63 -2.7 2,931,384 + RR42_RS13565 0.65 -0.9 2,931,385 - RR42_RS13565 0.65 -1.3 2,931,385 - RR42_RS13565 0.65 -1.3 2,931,385 - RR42_RS13565 0.65 -2.1 2,931,385 - RR42_RS13565 0.65 -1.9 2,931,471 + RR42_RS13565 0.70 -2.0 2,931,472 - RR42_RS13565 0.70 -2.0 2,931,472 - RR42_RS13565 0.70 -0.4 2,931,618 + RR42_RS13565 0.79 -1.7 2,931,619 - RR42_RS13565 0.79 -2.2 2,931,657 + RR42_RS13565 0.81 -2.6 2,931,657 + RR42_RS13565 0.81 -1.4 2,931,657 + RR42_RS13565 0.81 -1.6 2,931,657 + RR42_RS13565 0.81 -2.1 2,931,658 - RR42_RS13565 0.81 -1.5 2,931,658 - RR42_RS13565 0.81 -2.8 2,931,658 - RR42_RS13565 0.81 -1.3 2,931,675 + RR42_RS13565 0.82 -2.2 2,931,676 - RR42_RS13565 0.82 -3.0 2,931,947 + -1.0 2,931,957 - +0.4 2,931,957 - -3.4 2,932,083 + -0.7 2,932,388 - RR42_RS13570 0.28 +0.9 2,932,432 - RR42_RS13570 0.33 -0.7 2,932,432 - RR42_RS13570 0.33 -0.1 2,932,447 - RR42_RS13570 0.35 -0.3 2,932,549 + RR42_RS13570 0.48 -0.1 2,932,550 - RR42_RS13570 0.48 -0.2 2,932,596 + RR42_RS13570 0.53 -0.6 2,932,596 + RR42_RS13570 0.53 -0.9 2,932,597 - RR42_RS13570 0.54 -0.7 2,932,820 + RR42_RS13570 0.81 +0.2 2,932,820 + RR42_RS13570 0.81 -0.4 2,932,820 + RR42_RS13570 0.81 +0.1 2,932,820 + RR42_RS13570 0.81 +0.4 2,932,820 + RR42_RS13570 0.81 -2.2 2,932,820 + RR42_RS13570 0.81 +0.4 2,932,820 + RR42_RS13570 0.81 +0.3 2,932,820 + RR42_RS13570 0.81 -1.8 2,932,821 - RR42_RS13570 0.81 -0.9 2,932,821 - RR42_RS13570 0.81 +1.3 2,932,821 - RR42_RS13570 0.81 +0.1 2,932,825 + RR42_RS13570 0.82 -1.1 2,932,826 - RR42_RS13570 0.82 -1.7 2,932,927 + +1.1 2,932,929 + -0.7 2,932,929 + -1.3 2,932,929 + +0.5 2,932,929 + +2.6 2,932,929 + -0.1 2,932,929 + -0.7 2,932,929 + +0.6 2,932,929 + -1.1 2,932,929 + -1.0 2,932,929 + -0.7 2,932,933 + -0.6 2,932,933 + +0.9
Or see this region's nucleotide sequence