Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03560

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03555 and RR42_RS03560 are separated by 501 nucleotidesRR42_RS03560 and RR42_RS03565 are separated by 708 nucleotides RR42_RS03555: RR42_RS03555 - hypothetical protein, at 791,278 to 792,225 _RS03555 RR42_RS03560: RR42_RS03560 - hypothetical protein, at 792,727 to 793,317 _RS03560 RR42_RS03565: RR42_RS03565 - hypothetical protein, at 794,026 to 794,631 _RS03565 Position (kb) 792 793 794Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 791.779 kb on + strand, within RR42_RS03555at 791.780 kb on - strand, within RR42_RS03555at 791.788 kb on - strand, within RR42_RS03555at 791.970 kb on + strand, within RR42_RS03555at 792.065 kb on - strand, within RR42_RS03555at 792.276 kb on - strandat 792.276 kb on - strandat 792.276 kb on - strandat 792.294 kb on - strandat 792.294 kb on - strandat 792.294 kb on - strandat 792.294 kb on - strandat 792.383 kb on - strandat 792.492 kb on - strandat 792.553 kb on + strandat 792.771 kb on + strandat 792.814 kb on + strand, within RR42_RS03560at 792.814 kb on + strand, within RR42_RS03560at 792.814 kb on + strand, within RR42_RS03560at 792.815 kb on - strand, within RR42_RS03560at 792.818 kb on + strand, within RR42_RS03560at 793.385 kb on + strandat 793.386 kb on - strandat 793.386 kb on - strandat 793.438 kb on - strandat 793.452 kb on + strandat 793.576 kb on + strandat 793.669 kb on + strandat 793.683 kb on + strandat 793.684 kb on - strandat 793.698 kb on + strandat 793.824 kb on + strandat 793.860 kb on + strandat 793.861 kb on - strandat 793.867 kb on + strandat 793.867 kb on + strandat 793.868 kb on - strandat 794.107 kb on - strand, within RR42_RS03565at 794.185 kb on + strand, within RR42_RS03565at 794.185 kb on + strand, within RR42_RS03565at 794.186 kb on - strand, within RR42_RS03565at 794.212 kb on - strand, within RR42_RS03565at 794.232 kb on - strand, within RR42_RS03565

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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791,779 + RR42_RS03555 0.53 -3.0
791,780 - RR42_RS03555 0.53 -1.1
791,788 - RR42_RS03555 0.54 +1.3
791,970 + RR42_RS03555 0.73 -2.3
792,065 - RR42_RS03555 0.83 -0.1
792,276 - -2.4
792,276 - -2.2
792,276 - +2.9
792,294 - +0.0
792,294 - +0.8
792,294 - -0.1
792,294 - +0.6
792,383 - -0.2
792,492 - -0.7
792,553 + +0.1
792,771 + -2.6
792,814 + RR42_RS03560 0.15 -2.5
792,814 + RR42_RS03560 0.15 -2.2
792,814 + RR42_RS03560 0.15 -1.0
792,815 - RR42_RS03560 0.15 -0.1
792,818 + RR42_RS03560 0.15 -0.4
793,385 + +0.3
793,386 - -1.0
793,386 - -0.0
793,438 - -0.3
793,452 + +0.3
793,576 + -0.1
793,669 + -3.1
793,683 + -2.0
793,684 - +0.7
793,698 + -0.2
793,824 + -1.7
793,860 + -1.4
793,861 - +0.3
793,867 + -1.6
793,867 + -1.7
793,868 - -1.4
794,107 - RR42_RS03565 0.13 +0.1
794,185 + RR42_RS03565 0.26 -1.8
794,185 + RR42_RS03565 0.26 -0.4
794,186 - RR42_RS03565 0.26 -0.9
794,212 - RR42_RS03565 0.31 -0.0
794,232 - RR42_RS03565 0.34 +1.6

Or see this region's nucleotide sequence