Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02357 and CCNA_02358 are separated by 75 nucleotides CCNA_02358 and CCNA_02359 are separated by 39 nucleotides
CCNA_02357: CCNA_02357 - methylmalonic acid semialdehyde dehydrogenase, at 2,496,500 to 2,497,996
_02357
CCNA_02358: CCNA_02358 - FMN reductase, at 2,498,072 to 2,498,596
_02358
CCNA_02359: CCNA_02359 - hypothetical protein, at 2,498,636 to 2,499,670
_02359
CCNA_02360: CCNA_02360 - glycosyl transferase family 2 protein, at 2,499,556 to 2,500,476
_02360
Position (kb)
2498
2499 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2497.103 kb on - strand, within CCNA_02357 at 2497.113 kb on - strand, within CCNA_02357 at 2497.118 kb on + strand, within CCNA_02357 at 2497.126 kb on - strand, within CCNA_02357 at 2497.126 kb on - strand, within CCNA_02357 at 2497.128 kb on + strand, within CCNA_02357 at 2497.150 kb on - strand, within CCNA_02357 at 2497.155 kb on - strand, within CCNA_02357 at 2497.155 kb on - strand, within CCNA_02357 at 2497.195 kb on - strand, within CCNA_02357 at 2497.200 kb on - strand, within CCNA_02357 at 2497.200 kb on - strand, within CCNA_02357 at 2497.211 kb on - strand, within CCNA_02357 at 2497.223 kb on + strand, within CCNA_02357 at 2497.226 kb on - strand, within CCNA_02357 at 2497.262 kb on - strand, within CCNA_02357 at 2497.284 kb on + strand, within CCNA_02357 at 2497.301 kb on - strand, within CCNA_02357 at 2497.302 kb on - strand, within CCNA_02357 at 2497.302 kb on - strand, within CCNA_02357 at 2497.312 kb on + strand, within CCNA_02357 at 2497.330 kb on - strand, within CCNA_02357 at 2497.355 kb on + strand, within CCNA_02357 at 2497.355 kb on + strand, within CCNA_02357 at 2497.363 kb on - strand, within CCNA_02357 at 2497.363 kb on - strand, within CCNA_02357 at 2497.397 kb on + strand, within CCNA_02357 at 2497.397 kb on + strand, within CCNA_02357 at 2497.403 kb on - strand, within CCNA_02357 at 2497.403 kb on - strand, within CCNA_02357 at 2497.405 kb on - strand, within CCNA_02357 at 2497.425 kb on + strand, within CCNA_02357 at 2497.563 kb on - strand, within CCNA_02357 at 2497.636 kb on - strand, within CCNA_02357 at 2497.650 kb on - strand, within CCNA_02357 at 2497.656 kb on + strand, within CCNA_02357 at 2497.675 kb on + strand, within CCNA_02357 at 2497.683 kb on - strand, within CCNA_02357 at 2497.690 kb on + strand, within CCNA_02357 at 2497.710 kb on + strand, within CCNA_02357 at 2497.716 kb on + strand, within CCNA_02357 at 2497.724 kb on - strand, within CCNA_02357 at 2497.724 kb on - strand, within CCNA_02357 at 2497.724 kb on - strand, within CCNA_02357 at 2497.731 kb on + strand, within CCNA_02357 at 2497.739 kb on + strand, within CCNA_02357 at 2497.748 kb on - strand, within CCNA_02357 at 2497.792 kb on - strand, within CCNA_02357 at 2497.817 kb on + strand, within CCNA_02357 at 2497.817 kb on + strand, within CCNA_02357 at 2497.832 kb on + strand, within CCNA_02357 at 2497.865 kb on + strand at 2497.898 kb on + strand at 2497.898 kb on + strand at 2497.906 kb on - strand at 2497.906 kb on - strand at 2497.955 kb on + strand at 2497.968 kb on - strand at 2498.005 kb on + strand at 2498.005 kb on + strand at 2498.034 kb on + strand at 2498.047 kb on - strand at 2498.136 kb on + strand, within CCNA_02358 at 2498.144 kb on - strand, within CCNA_02358 at 2498.166 kb on + strand, within CCNA_02358 at 2498.203 kb on - strand, within CCNA_02358 at 2498.258 kb on - strand, within CCNA_02358 at 2498.276 kb on - strand, within CCNA_02358 at 2498.357 kb on + strand, within CCNA_02358 at 2498.357 kb on + strand, within CCNA_02358 at 2498.365 kb on - strand, within CCNA_02358 at 2498.399 kb on - strand, within CCNA_02358 at 2498.403 kb on + strand, within CCNA_02358 at 2498.403 kb on + strand, within CCNA_02358 at 2498.403 kb on + strand, within CCNA_02358 at 2498.408 kb on + strand, within CCNA_02358 at 2498.411 kb on - strand, within CCNA_02358 at 2498.411 kb on - strand, within CCNA_02358 at 2498.411 kb on - strand, within CCNA_02358 at 2498.442 kb on - strand, within CCNA_02358 at 2498.450 kb on + strand, within CCNA_02358 at 2498.457 kb on + strand, within CCNA_02358 at 2498.496 kb on - strand, within CCNA_02358 at 2498.507 kb on - strand, within CCNA_02358 at 2498.534 kb on + strand, within CCNA_02358 at 2498.566 kb on + strand at 2498.567 kb on - strand at 2498.574 kb on - strand at 2498.574 kb on - strand at 2498.574 kb on - strand at 2498.574 kb on - strand at 2498.607 kb on - strand at 2498.627 kb on + strand at 2498.633 kb on + strand at 2498.633 kb on + strand at 2498.634 kb on + strand at 2498.641 kb on - strand at 2498.641 kb on - strand at 2498.642 kb on - strand at 2498.683 kb on + strand at 2498.691 kb on - strand at 2498.691 kb on - strand at 2498.725 kb on + strand at 2498.725 kb on + strand at 2498.770 kb on - strand, within CCNA_02359 at 2498.784 kb on - strand, within CCNA_02359 at 2498.784 kb on - strand, within CCNA_02359 at 2498.784 kb on - strand, within CCNA_02359 at 2498.819 kb on + strand, within CCNA_02359 at 2498.855 kb on + strand, within CCNA_02359 at 2498.897 kb on + strand, within CCNA_02359 at 2498.910 kb on - strand, within CCNA_02359 at 2498.970 kb on - strand, within CCNA_02359 at 2498.993 kb on - strand, within CCNA_02359 at 2498.993 kb on - strand, within CCNA_02359 at 2498.993 kb on - strand, within CCNA_02359 at 2499.041 kb on + strand, within CCNA_02359 at 2499.047 kb on - strand, within CCNA_02359 at 2499.086 kb on + strand, within CCNA_02359 at 2499.087 kb on + strand, within CCNA_02359 at 2499.087 kb on + strand, within CCNA_02359 at 2499.089 kb on - strand, within CCNA_02359 at 2499.095 kb on - strand, within CCNA_02359 at 2499.145 kb on - strand, within CCNA_02359 at 2499.145 kb on - strand, within CCNA_02359 at 2499.162 kb on - strand, within CCNA_02359 at 2499.181 kb on + strand, within CCNA_02359 at 2499.203 kb on + strand, within CCNA_02359 at 2499.208 kb on + strand, within CCNA_02359 at 2499.208 kb on + strand, within CCNA_02359 at 2499.208 kb on + strand, within CCNA_02359 at 2499.216 kb on - strand, within CCNA_02359 at 2499.256 kb on - strand, within CCNA_02359 at 2499.365 kb on + strand, within CCNA_02359 at 2499.365 kb on + strand, within CCNA_02359 at 2499.383 kb on - strand, within CCNA_02359 at 2499.427 kb on + strand, within CCNA_02359 at 2499.446 kb on + strand, within CCNA_02359 at 2499.446 kb on + strand, within CCNA_02359 at 2499.452 kb on + strand, within CCNA_02359 at 2499.454 kb on - strand, within CCNA_02359 at 2499.476 kb on + strand, within CCNA_02359 at 2499.484 kb on - strand, within CCNA_02359 at 2499.484 kb on - strand, within CCNA_02359 at 2499.484 kb on - strand, within CCNA_02359 at 2499.512 kb on + strand, within CCNA_02359 at 2499.512 kb on + strand, within CCNA_02359 at 2499.527 kb on - strand, within CCNA_02359 at 2499.527 kb on - strand, within CCNA_02359 at 2499.591 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,497,103 - CCNA_02357 0.40 +0.3 2,497,113 - CCNA_02357 0.41 -0.0 2,497,118 + CCNA_02357 0.41 +0.2 2,497,126 - CCNA_02357 0.42 -0.6 2,497,126 - CCNA_02357 0.42 -0.5 2,497,128 + CCNA_02357 0.42 -0.8 2,497,150 - CCNA_02357 0.43 +0.2 2,497,155 - CCNA_02357 0.44 +0.2 2,497,155 - CCNA_02357 0.44 +0.4 2,497,195 - CCNA_02357 0.46 +0.2 2,497,200 - CCNA_02357 0.47 +0.5 2,497,200 - CCNA_02357 0.47 +0.7 2,497,211 - CCNA_02357 0.47 -3.3 2,497,223 + CCNA_02357 0.48 -0.6 2,497,226 - CCNA_02357 0.48 +0.0 2,497,262 - CCNA_02357 0.51 -0.0 2,497,284 + CCNA_02357 0.52 -0.2 2,497,301 - CCNA_02357 0.54 +0.8 2,497,302 - CCNA_02357 0.54 +0.7 2,497,302 - CCNA_02357 0.54 +0.2 2,497,312 + CCNA_02357 0.54 -0.1 2,497,330 - CCNA_02357 0.55 +0.4 2,497,355 + CCNA_02357 0.57 +0.7 2,497,355 + CCNA_02357 0.57 -0.6 2,497,363 - CCNA_02357 0.58 +0.4 2,497,363 - CCNA_02357 0.58 +0.0 2,497,397 + CCNA_02357 0.60 -0.2 2,497,397 + CCNA_02357 0.60 -0.1 2,497,403 - CCNA_02357 0.60 +0.7 2,497,403 - CCNA_02357 0.60 +0.7 2,497,405 - CCNA_02357 0.60 +0.9 2,497,425 + CCNA_02357 0.62 -1.0 2,497,563 - CCNA_02357 0.71 +0.1 2,497,636 - CCNA_02357 0.76 +0.2 2,497,650 - CCNA_02357 0.77 +0.5 2,497,656 + CCNA_02357 0.77 -1.8 2,497,675 + CCNA_02357 0.78 +0.5 2,497,683 - CCNA_02357 0.79 +0.2 2,497,690 + CCNA_02357 0.79 +0.3 2,497,710 + CCNA_02357 0.81 +0.3 2,497,716 + CCNA_02357 0.81 +0.3 2,497,724 - CCNA_02357 0.82 -0.0 2,497,724 - CCNA_02357 0.82 +1.8 2,497,724 - CCNA_02357 0.82 +1.7 2,497,731 + CCNA_02357 0.82 -1.6 2,497,739 + CCNA_02357 0.83 -0.7 2,497,748 - CCNA_02357 0.83 +1.3 2,497,792 - CCNA_02357 0.86 +1.1 2,497,817 + CCNA_02357 0.88 -0.6 2,497,817 + CCNA_02357 0.88 -0.5 2,497,832 + CCNA_02357 0.89 -1.5 2,497,865 + +0.0 2,497,898 + -0.5 2,497,898 + -1.1 2,497,906 - +0.1 2,497,906 - +0.3 2,497,955 + +0.2 2,497,968 - +0.5 2,498,005 + -1.9 2,498,005 + -0.5 2,498,034 + -1.0 2,498,047 - +1.1 2,498,136 + CCNA_02358 0.12 -0.9 2,498,144 - CCNA_02358 0.14 +0.2 2,498,166 + CCNA_02358 0.18 +0.3 2,498,203 - CCNA_02358 0.25 -0.2 2,498,258 - CCNA_02358 0.35 +0.1 2,498,276 - CCNA_02358 0.39 +1.6 2,498,357 + CCNA_02358 0.54 -0.1 2,498,357 + CCNA_02358 0.54 +0.3 2,498,365 - CCNA_02358 0.56 +0.8 2,498,399 - CCNA_02358 0.62 +0.4 2,498,403 + CCNA_02358 0.63 -0.1 2,498,403 + CCNA_02358 0.63 +0.3 2,498,403 + CCNA_02358 0.63 -0.0 2,498,408 + CCNA_02358 0.64 +0.9 2,498,411 - CCNA_02358 0.65 -0.1 2,498,411 - CCNA_02358 0.65 +0.1 2,498,411 - CCNA_02358 0.65 +1.3 2,498,442 - CCNA_02358 0.70 +0.6 2,498,450 + CCNA_02358 0.72 -0.8 2,498,457 + CCNA_02358 0.73 +0.3 2,498,496 - CCNA_02358 0.81 +0.4 2,498,507 - CCNA_02358 0.83 +0.2 2,498,534 + CCNA_02358 0.88 -0.2 2,498,566 + -0.4 2,498,567 - +0.8 2,498,574 - -0.3 2,498,574 - -2.0 2,498,574 - -1.0 2,498,574 - +1.0 2,498,607 - +0.6 2,498,627 + +1.1 2,498,633 + +0.7 2,498,633 + -2.4 2,498,634 + -0.1 2,498,641 - -1.6 2,498,641 - +1.5 2,498,642 - +0.1 2,498,683 + +1.4 2,498,691 - -0.3 2,498,691 - +0.3 2,498,725 + -1.1 2,498,725 + -0.7 2,498,770 - CCNA_02359 0.13 +1.0 2,498,784 - CCNA_02359 0.14 +1.1 2,498,784 - CCNA_02359 0.14 +0.6 2,498,784 - CCNA_02359 0.14 -0.2 2,498,819 + CCNA_02359 0.18 -0.4 2,498,855 + CCNA_02359 0.21 -0.4 2,498,897 + CCNA_02359 0.25 -0.6 2,498,910 - CCNA_02359 0.26 +0.9 2,498,970 - CCNA_02359 0.32 +0.5 2,498,993 - CCNA_02359 0.34 +0.1 2,498,993 - CCNA_02359 0.34 +0.5 2,498,993 - CCNA_02359 0.34 +0.2 2,499,041 + CCNA_02359 0.39 +0.5 2,499,047 - CCNA_02359 0.40 -0.5 2,499,086 + CCNA_02359 0.43 -1.8 2,499,087 + CCNA_02359 0.44 -0.5 2,499,087 + CCNA_02359 0.44 +0.3 2,499,089 - CCNA_02359 0.44 +0.0 2,499,095 - CCNA_02359 0.44 -0.1 2,499,145 - CCNA_02359 0.49 -0.9 2,499,145 - CCNA_02359 0.49 +0.0 2,499,162 - CCNA_02359 0.51 -0.4 2,499,181 + CCNA_02359 0.53 +0.1 2,499,203 + CCNA_02359 0.55 +0.1 2,499,208 + CCNA_02359 0.55 -0.2 2,499,208 + CCNA_02359 0.55 -0.3 2,499,208 + CCNA_02359 0.55 +0.6 2,499,216 - CCNA_02359 0.56 +0.1 2,499,256 - CCNA_02359 0.60 -1.5 2,499,365 + CCNA_02359 0.70 -0.4 2,499,365 + CCNA_02359 0.70 +0.5 2,499,383 - CCNA_02359 0.72 +0.3 2,499,427 + CCNA_02359 0.76 -1.6 2,499,446 + CCNA_02359 0.78 -1.5 2,499,446 + CCNA_02359 0.78 -0.2 2,499,452 + CCNA_02359 0.79 +0.0 2,499,454 - CCNA_02359 0.79 -0.4 2,499,476 + CCNA_02359 0.81 -1.4 2,499,484 - CCNA_02359 0.82 +0.1 2,499,484 - CCNA_02359 0.82 +0.3 2,499,484 - CCNA_02359 0.82 -0.1 2,499,512 + CCNA_02359 0.85 -1.0 2,499,512 + CCNA_02359 0.85 +0.4 2,499,527 - CCNA_02359 0.86 +0.1 2,499,527 - CCNA_02359 0.86 -0.5 2,499,591 + +0.5
Or see this region's nucleotide sequence