Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4868 and Psyr_4869 are separated by 428 nucleotides Psyr_4869 and Psyr_4870 are separated by 31 nucleotides
Psyr_4868: Psyr_4868 - glutamate--putrescine ligase, at 5,778,347 to 5,779,723
_4868
Psyr_4869: Psyr_4869 - transcriptional regulator, TetR family, at 5,780,152 to 5,780,826
_4869
Psyr_4870: Psyr_4870 - hypothetical protein, at 5,780,858 to 5,781,937
_4870
Position (kb) 5780
5781 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5779.156 kb on + strand, within Psyr_4868 at 5779.156 kb on + strand, within Psyr_4868 at 5779.156 kb on + strand, within Psyr_4868 at 5779.156 kb on + strand, within Psyr_4868 at 5779.157 kb on - strand, within Psyr_4868 at 5779.157 kb on - strand, within Psyr_4868 at 5779.157 kb on - strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.361 kb on - strand, within Psyr_4868 at 5779.401 kb on + strand, within Psyr_4868 at 5779.401 kb on + strand, within Psyr_4868 at 5779.401 kb on + strand, within Psyr_4868 at 5779.530 kb on - strand, within Psyr_4868 at 5779.610 kb on + strand at 5779.610 kb on + strand at 5779.610 kb on + strand at 5779.610 kb on + strand at 5779.610 kb on + strand at 5779.610 kb on + strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.625 kb on + strand at 5779.625 kb on + strand at 5779.625 kb on + strand at 5779.625 kb on + strand at 5779.625 kb on + strand at 5779.625 kb on + strand at 5779.626 kb on - strand at 5779.648 kb on + strand at 5779.649 kb on - strand at 5779.649 kb on - strand at 5779.698 kb on - strand at 5779.706 kb on + strand at 5779.715 kb on - strand at 5779.843 kb on + strand at 5779.843 kb on + strand at 5779.843 kb on + strand at 5779.843 kb on + strand at 5779.844 kb on - strand at 5779.844 kb on - strand at 5779.929 kb on + strand at 5779.929 kb on + strand at 5779.929 kb on + strand at 5779.930 kb on - strand at 5779.930 kb on - strand at 5779.942 kb on - strand at 5779.959 kb on + strand at 5779.960 kb on - strand at 5779.960 kb on - strand at 5779.977 kb on + strand at 5779.978 kb on - strand at 5779.978 kb on - strand at 5779.986 kb on + strand at 5779.986 kb on + strand at 5779.987 kb on - strand at 5779.987 kb on - strand at 5780.065 kb on + strand at 5780.065 kb on + strand at 5780.065 kb on + strand at 5780.066 kb on - strand at 5780.066 kb on - strand at 5780.075 kb on + strand at 5780.075 kb on + strand at 5780.075 kb on + strand at 5780.075 kb on + strand at 5780.075 kb on + strand at 5780.076 kb on - strand at 5780.076 kb on - strand at 5780.076 kb on - strand at 5780.148 kb on + strand at 5780.148 kb on + strand at 5780.148 kb on + strand at 5780.148 kb on + strand at 5780.149 kb on - strand at 5780.149 kb on - strand at 5780.299 kb on + strand, within Psyr_4869 at 5780.300 kb on - strand, within Psyr_4869 at 5780.300 kb on - strand, within Psyr_4869 at 5780.300 kb on - strand, within Psyr_4869 at 5780.341 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.651 kb on + strand, within Psyr_4869 at 5780.651 kb on + strand, within Psyr_4869 at 5780.652 kb on - strand, within Psyr_4869 at 5780.657 kb on + strand, within Psyr_4869 at 5780.657 kb on + strand, within Psyr_4869 at 5780.657 kb on + strand, within Psyr_4869 at 5780.657 kb on + strand, within Psyr_4869 at 5780.657 kb on + strand, within Psyr_4869 at 5780.657 kb on + strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.692 kb on + strand, within Psyr_4869 at 5780.692 kb on + strand, within Psyr_4869 at 5780.692 kb on + strand, within Psyr_4869 at 5780.692 kb on + strand, within Psyr_4869 at 5780.693 kb on - strand, within Psyr_4869 at 5780.693 kb on - strand, within Psyr_4869 at 5780.693 kb on - strand, within Psyr_4869 at 5780.693 kb on - strand, within Psyr_4869 at 5780.767 kb on + strand at 5780.767 kb on + strand at 5780.767 kb on + strand at 5780.779 kb on + strand at 5780.779 kb on + strand at 5780.779 kb on + strand at 5780.779 kb on + strand at 5780.780 kb on - strand at 5780.780 kb on - strand at 5780.780 kb on - strand at 5780.857 kb on - strand at 5780.869 kb on + strand at 5780.870 kb on - strand at 5780.870 kb on - strand at 5780.873 kb on + strand at 5780.873 kb on + strand at 5780.874 kb on - strand at 5780.874 kb on - strand at 5780.899 kb on + strand at 5780.912 kb on + strand at 5780.930 kb on - strand at 5780.930 kb on - strand at 5780.950 kb on + strand at 5780.993 kb on + strand, within Psyr_4870 at 5780.994 kb on - strand, within Psyr_4870 at 5780.994 kb on - strand, within Psyr_4870 at 5781.010 kb on + strand, within Psyr_4870 at 5781.020 kb on + strand, within Psyr_4870 at 5781.032 kb on + strand, within Psyr_4870 at 5781.033 kb on - strand, within Psyr_4870 at 5781.049 kb on + strand, within Psyr_4870 at 5781.049 kb on + strand, within Psyr_4870 at 5781.050 kb on - strand, within Psyr_4870 at 5781.050 kb on - strand, within Psyr_4870 at 5781.050 kb on - strand, within Psyr_4870 at 5781.066 kb on + strand, within Psyr_4870 at 5781.142 kb on + strand, within Psyr_4870 at 5781.142 kb on + strand, within Psyr_4870 at 5781.142 kb on + strand, within Psyr_4870 at 5781.142 kb on + strand, within Psyr_4870 at 5781.142 kb on + strand, within Psyr_4870 at 5781.143 kb on - strand, within Psyr_4870 at 5781.143 kb on - strand, within Psyr_4870 at 5781.143 kb on - strand, within Psyr_4870 at 5781.143 kb on - strand, within Psyr_4870 at 5781.144 kb on + strand, within Psyr_4870 at 5781.144 kb on + strand, within Psyr_4870 at 5781.145 kb on - strand, within Psyr_4870 at 5781.145 kb on - strand, within Psyr_4870 at 5781.181 kb on + strand, within Psyr_4870 at 5781.187 kb on + strand, within Psyr_4870 at 5781.188 kb on - strand, within Psyr_4870 at 5781.336 kb on - strand, within Psyr_4870 at 5781.377 kb on + strand, within Psyr_4870 at 5781.378 kb on - strand, within Psyr_4870 at 5781.392 kb on + strand, within Psyr_4870 at 5781.401 kb on - strand, within Psyr_4870 at 5781.401 kb on - strand, within Psyr_4870 at 5781.402 kb on + strand, within Psyr_4870 at 5781.403 kb on - strand, within Psyr_4870 at 5781.403 kb on - strand, within Psyr_4870 at 5781.403 kb on - strand, within Psyr_4870 at 5781.460 kb on - strand, within Psyr_4870 at 5781.529 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.559 kb on - strand, within Psyr_4870 at 5781.559 kb on - strand, within Psyr_4870 at 5781.648 kb on + strand, within Psyr_4870 at 5781.649 kb on - strand, within Psyr_4870 at 5781.762 kb on - strand, within Psyr_4870
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 5,779,156 + Psyr_4868 0.59 -2.4 5,779,156 + Psyr_4868 0.59 -0.1 5,779,156 + Psyr_4868 0.59 -0.0 5,779,156 + Psyr_4868 0.59 +1.2 5,779,157 - Psyr_4868 0.59 +1.0 5,779,157 - Psyr_4868 0.59 -0.7 5,779,157 - Psyr_4868 0.59 -0.8 5,779,322 + Psyr_4868 0.71 +0.2 5,779,322 + Psyr_4868 0.71 -0.2 5,779,322 + Psyr_4868 0.71 +1.0 5,779,322 + Psyr_4868 0.71 +0.2 5,779,322 + Psyr_4868 0.71 +0.2 5,779,322 + Psyr_4868 0.71 +0.5 5,779,322 + Psyr_4868 0.71 -2.1 5,779,322 + Psyr_4868 0.71 +0.4 5,779,322 + Psyr_4868 0.71 +1.2 5,779,322 + Psyr_4868 0.71 +0.2 5,779,323 - Psyr_4868 0.71 -0.5 5,779,323 - Psyr_4868 0.71 +0.0 5,779,323 - Psyr_4868 0.71 -0.8 5,779,323 - Psyr_4868 0.71 -0.1 5,779,323 - Psyr_4868 0.71 -0.5 5,779,323 - Psyr_4868 0.71 +1.2 5,779,323 - Psyr_4868 0.71 +0.2 5,779,323 - Psyr_4868 0.71 +0.2 5,779,323 - Psyr_4868 0.71 +2.0 5,779,323 - Psyr_4868 0.71 +0.4 5,779,323 - Psyr_4868 0.71 -0.1 5,779,323 - Psyr_4868 0.71 -1.3 5,779,323 - Psyr_4868 0.71 +0.4 5,779,323 - Psyr_4868 0.71 -0.8 5,779,323 - Psyr_4868 0.71 +0.8 5,779,361 - Psyr_4868 0.74 -0.9 5,779,401 + Psyr_4868 0.77 -0.1 5,779,401 + Psyr_4868 0.77 +0.6 5,779,401 + Psyr_4868 0.77 -0.3 5,779,530 - Psyr_4868 0.86 -0.0 5,779,610 + -1.1 5,779,610 + +0.4 5,779,610 + +1.1 5,779,610 + +1.4 5,779,610 + -1.4 5,779,610 + +0.6 5,779,611 - +2.6 5,779,611 - -1.1 5,779,611 - -0.4 5,779,611 - -0.9 5,779,611 - +0.3 5,779,611 - +0.0 5,779,611 - -0.1 5,779,611 - +1.0 5,779,611 - +0.2 5,779,611 - +0.2 5,779,611 - -0.1 5,779,625 + -0.4 5,779,625 + +1.1 5,779,625 + -1.7 5,779,625 + -0.4 5,779,625 + -0.5 5,779,625 + -0.4 5,779,626 - -0.6 5,779,648 + -0.6 5,779,649 - -1.1 5,779,649 - -2.4 5,779,698 - +0.0 5,779,706 + +1.2 5,779,715 - +0.6 5,779,843 + +0.4 5,779,843 + +0.5 5,779,843 + -0.2 5,779,843 + +0.1 5,779,844 - +2.2 5,779,844 - +0.2 5,779,929 + +0.4 5,779,929 + -0.9 5,779,929 + +0.4 5,779,930 - -0.0 5,779,930 - -0.4 5,779,942 - -1.1 5,779,959 + -0.4 5,779,960 - +0.2 5,779,960 - +0.0 5,779,977 + +1.2 5,779,978 - +0.2 5,779,978 - +3.0 5,779,986 + -0.8 5,779,986 + -1.0 5,779,987 - -0.9 5,779,987 - +0.2 5,780,065 + +0.6 5,780,065 + +0.2 5,780,065 + -0.5 5,780,066 - -1.2 5,780,066 - +0.6 5,780,075 + -0.1 5,780,075 + +0.3 5,780,075 + +0.0 5,780,075 + -1.6 5,780,075 + +0.6 5,780,076 - -0.6 5,780,076 - +1.0 5,780,076 - +0.6 5,780,148 + +0.2 5,780,148 + +0.1 5,780,148 + -0.8 5,780,148 + +0.2 5,780,149 - -0.7 5,780,149 - +1.5 5,780,299 + Psyr_4869 0.22 +1.2 5,780,300 - Psyr_4869 0.22 -0.7 5,780,300 - Psyr_4869 0.22 -1.0 5,780,300 - Psyr_4869 0.22 +0.6 5,780,341 + Psyr_4869 0.28 -0.1 5,780,497 + Psyr_4869 0.51 +0.2 5,780,497 + Psyr_4869 0.51 +1.5 5,780,497 + Psyr_4869 0.51 +0.2 5,780,497 + Psyr_4869 0.51 +0.2 5,780,497 + Psyr_4869 0.51 +1.2 5,780,497 + Psyr_4869 0.51 +0.7 5,780,497 + Psyr_4869 0.51 +0.8 5,780,498 - Psyr_4869 0.51 -0.1 5,780,498 - Psyr_4869 0.51 +0.1 5,780,498 - Psyr_4869 0.51 -0.1 5,780,498 - Psyr_4869 0.51 +0.1 5,780,498 - Psyr_4869 0.51 -1.1 5,780,498 - Psyr_4869 0.51 +0.1 5,780,498 - Psyr_4869 0.51 +1.9 5,780,498 - Psyr_4869 0.51 -0.0 5,780,651 + Psyr_4869 0.74 +0.7 5,780,651 + Psyr_4869 0.74 +0.0 5,780,652 - Psyr_4869 0.74 -0.4 5,780,657 + Psyr_4869 0.75 -0.1 5,780,657 + Psyr_4869 0.75 -1.1 5,780,657 + Psyr_4869 0.75 +0.9 5,780,657 + Psyr_4869 0.75 -0.3 5,780,657 + Psyr_4869 0.75 +0.6 5,780,657 + Psyr_4869 0.75 -0.5 5,780,658 - Psyr_4869 0.75 +0.3 5,780,658 - Psyr_4869 0.75 +1.2 5,780,658 - Psyr_4869 0.75 +2.5 5,780,658 - Psyr_4869 0.75 -1.8 5,780,658 - Psyr_4869 0.75 +1.6 5,780,658 - Psyr_4869 0.75 -0.9 5,780,658 - Psyr_4869 0.75 -0.4 5,780,658 - Psyr_4869 0.75 +0.6 5,780,692 + Psyr_4869 0.80 -0.5 5,780,692 + Psyr_4869 0.80 +0.5 5,780,692 + Psyr_4869 0.80 -1.6 5,780,692 + Psyr_4869 0.80 -1.2 5,780,693 - Psyr_4869 0.80 -1.8 5,780,693 - Psyr_4869 0.80 +0.6 5,780,693 - Psyr_4869 0.80 +0.6 5,780,693 - Psyr_4869 0.80 -0.4 5,780,767 + +1.5 5,780,767 + +0.5 5,780,767 + +0.9 5,780,779 + -0.3 5,780,779 + -0.2 5,780,779 + -0.5 5,780,779 + -1.1 5,780,780 - +0.4 5,780,780 - +0.5 5,780,780 - -3.6 5,780,857 - -0.7 5,780,869 + +0.2 5,780,870 - +0.1 5,780,870 - -1.5 5,780,873 + +0.2 5,780,873 + -1.0 5,780,874 - -0.2 5,780,874 - -0.9 5,780,899 + -0.4 5,780,912 + +0.3 5,780,930 - -0.4 5,780,930 - +0.2 5,780,950 + +1.2 5,780,993 + Psyr_4870 0.12 -0.2 5,780,994 - Psyr_4870 0.13 +1.2 5,780,994 - Psyr_4870 0.13 -0.5 5,781,010 + Psyr_4870 0.14 -0.4 5,781,020 + Psyr_4870 0.15 +0.9 5,781,032 + Psyr_4870 0.16 -0.0 5,781,033 - Psyr_4870 0.16 +0.2 5,781,049 + Psyr_4870 0.18 +0.6 5,781,049 + Psyr_4870 0.18 +0.3 5,781,050 - Psyr_4870 0.18 -1.2 5,781,050 - Psyr_4870 0.18 -2.2 5,781,050 - Psyr_4870 0.18 +0.8 5,781,066 + Psyr_4870 0.19 +1.5 5,781,142 + Psyr_4870 0.26 +0.8 5,781,142 + Psyr_4870 0.26 +3.8 5,781,142 + Psyr_4870 0.26 +0.1 5,781,142 + Psyr_4870 0.26 -0.7 5,781,142 + Psyr_4870 0.26 -0.6 5,781,143 - Psyr_4870 0.26 -0.8 5,781,143 - Psyr_4870 0.26 +0.8 5,781,143 - Psyr_4870 0.26 -0.8 5,781,143 - Psyr_4870 0.26 -0.4 5,781,144 + Psyr_4870 0.26 -0.8 5,781,144 + Psyr_4870 0.26 +1.0 5,781,145 - Psyr_4870 0.27 -0.0 5,781,145 - Psyr_4870 0.27 +1.6 5,781,181 + Psyr_4870 0.30 +0.4 5,781,187 + Psyr_4870 0.30 +0.4 5,781,188 - Psyr_4870 0.31 -0.2 5,781,336 - Psyr_4870 0.44 -2.6 5,781,377 + Psyr_4870 0.48 -0.5 5,781,378 - Psyr_4870 0.48 -1.6 5,781,392 + Psyr_4870 0.49 -0.4 5,781,401 - Psyr_4870 0.50 -1.0 5,781,401 - Psyr_4870 0.50 -0.4 5,781,402 + Psyr_4870 0.50 +1.4 5,781,403 - Psyr_4870 0.50 -0.9 5,781,403 - Psyr_4870 0.50 +0.2 5,781,403 - Psyr_4870 0.50 +2.8 5,781,460 - Psyr_4870 0.56 -0.4 5,781,529 + Psyr_4870 0.62 +0.6 5,781,531 + Psyr_4870 0.62 -0.7 5,781,531 + Psyr_4870 0.62 -3.0 5,781,531 + Psyr_4870 0.62 +2.4 5,781,531 + Psyr_4870 0.62 -0.2 5,781,531 + Psyr_4870 0.62 -0.5 5,781,559 - Psyr_4870 0.65 -0.0 5,781,559 - Psyr_4870 0.65 +0.1 5,781,648 + Psyr_4870 0.73 +0.8 5,781,649 - Psyr_4870 0.73 -1.4 5,781,762 - Psyr_4870 0.84 +0.0
Or see this region's nucleotide sequence