Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2744

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2742 and Psyr_2743 are separated by 24 nucleotidesPsyr_2743 and Psyr_2744 are separated by 15 nucleotidesPsyr_2744 and Psyr_2745 are separated by 5 nucleotides Psyr_2742: Psyr_2742 - Iron-containing alcohol dehydrogenase, at 3,328,127 to 3,329,281 _2742 Psyr_2743: Psyr_2743 - Lysine exporter protein (LYSE/YGGA), at 3,329,306 to 3,329,950 _2743 Psyr_2744: Psyr_2744 - conserved hypothetical protein, at 3,329,966 to 3,331,708 _2744 Psyr_2745: Psyr_2745 - Pyridoxal-5'-phosphate-dependent enzyme, beta subunit:Ornithine cyclodeaminase/mu-crystallin, at 3,331,714 to 3,333,771 _2745 Position (kb) 3329 3330 3331 3332Strain fitness (log2 ratio) -2 -1 0 1 2at 3329.031 kb on + strand, within Psyr_2742at 3329.031 kb on + strand, within Psyr_2742at 3329.032 kb on - strand, within Psyr_2742at 3329.144 kb on - strand, within Psyr_2742at 3329.189 kb on + strandat 3329.189 kb on + strandat 3329.189 kb on + strandat 3329.189 kb on + strandat 3329.189 kb on + strandat 3329.189 kb on + strandat 3329.190 kb on - strandat 3329.190 kb on - strandat 3329.190 kb on - strandat 3329.190 kb on - strandat 3329.190 kb on - strandat 3329.190 kb on - strandat 3329.190 kb on - strandat 3329.288 kb on - strandat 3329.295 kb on + strandat 3329.410 kb on - strand, within Psyr_2743at 3329.490 kb on - strand, within Psyr_2743at 3329.553 kb on + strandat 3329.553 kb on + strand, within Psyr_2743at 3329.553 kb on + strand, within Psyr_2743at 3329.554 kb on - strand, within Psyr_2743at 3329.554 kb on - strand, within Psyr_2743at 3329.604 kb on + strand, within Psyr_2743at 3329.704 kb on - strand, within Psyr_2743at 3329.950 kb on + strandat 3329.950 kb on + strandat 3329.953 kb on + strandat 3330.105 kb on + strandat 3330.105 kb on + strandat 3330.106 kb on - strandat 3330.106 kb on - strandat 3330.114 kb on + strandat 3330.114 kb on + strandat 3330.462 kb on + strand, within Psyr_2744at 3330.631 kb on - strand, within Psyr_2744at 3331.023 kb on + strand, within Psyr_2744at 3331.057 kb on - strand, within Psyr_2744at 3331.326 kb on + strand, within Psyr_2744at 3331.341 kb on + strand, within Psyr_2744at 3331.342 kb on - strand, within Psyr_2744at 3331.433 kb on + strand, within Psyr_2744at 3331.433 kb on + strand, within Psyr_2744at 3331.433 kb on + strand, within Psyr_2744at 3331.434 kb on - strand, within Psyr_2744at 3331.434 kb on - strand, within Psyr_2744at 3331.543 kb on - strandat 3331.919 kb on + strandat 3332.071 kb on + strand, within Psyr_2745at 3332.071 kb on + strand, within Psyr_2745at 3332.071 kb on + strand, within Psyr_2745at 3332.072 kb on - strand, within Psyr_2745at 3332.072 kb on - strand, within Psyr_2745at 3332.075 kb on + strand, within Psyr_2745at 3332.075 kb on + strand, within Psyr_2745at 3332.076 kb on - strand, within Psyr_2745at 3332.076 kb on - strand, within Psyr_2745at 3332.091 kb on + strand, within Psyr_2745at 3332.579 kb on + strand, within Psyr_2745at 3332.580 kb on - strand, within Psyr_2745at 3332.580 kb on - strand, within Psyr_2745at 3332.621 kb on + strand, within Psyr_2745at 3332.621 kb on + strand, within Psyr_2745at 3332.622 kb on - strand, within Psyr_2745at 3332.622 kb on - strand, within Psyr_2745at 3332.622 kb on - strand, within Psyr_2745at 3332.643 kb on + strand, within Psyr_2745at 3332.644 kb on - strand, within Psyr_2745

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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3,329,031 + Psyr_2742 0.78 +0.2
3,329,031 + Psyr_2742 0.78 +0.1
3,329,032 - Psyr_2742 0.78 -0.3
3,329,144 - Psyr_2742 0.88 -0.6
3,329,189 + +1.6
3,329,189 + -0.1
3,329,189 + -1.6
3,329,189 + +0.3
3,329,189 + +0.1
3,329,189 + -0.2
3,329,190 - +1.3
3,329,190 - +0.4
3,329,190 - -1.0
3,329,190 - +0.4
3,329,190 - -1.2
3,329,190 - -0.2
3,329,190 - -0.1
3,329,288 - -1.4
3,329,295 + +0.3
3,329,410 - Psyr_2743 0.16 +1.8
3,329,490 - Psyr_2743 0.29 +0.2
3,329,553 + +0.8
3,329,553 + Psyr_2743 0.38 +0.6
3,329,553 + Psyr_2743 0.38 +0.8
3,329,554 - Psyr_2743 0.38 +1.8
3,329,554 - Psyr_2743 0.38 -0.8
3,329,604 + Psyr_2743 0.46 +0.4
3,329,704 - Psyr_2743 0.62 +0.8
3,329,950 + -0.5
3,329,950 + +0.2
3,329,953 + +0.0
3,330,105 + -0.2
3,330,105 + +0.8
3,330,106 - +1.0
3,330,106 - +0.0
3,330,114 + -0.6
3,330,114 + -0.9
3,330,462 + Psyr_2744 0.28 +0.8
3,330,631 - Psyr_2744 0.38 -2.4
3,331,023 + Psyr_2744 0.61 +0.4
3,331,057 - Psyr_2744 0.63 +1.1
3,331,326 + Psyr_2744 0.78 -1.0
3,331,341 + Psyr_2744 0.79 +0.2
3,331,342 - Psyr_2744 0.79 +0.0
3,331,433 + Psyr_2744 0.84 +0.8
3,331,433 + Psyr_2744 0.84 +1.8
3,331,433 + Psyr_2744 0.84 +1.0
3,331,434 - Psyr_2744 0.84 +0.1
3,331,434 - Psyr_2744 0.84 +0.8
3,331,543 - -0.2
3,331,919 + -0.2
3,332,071 + Psyr_2745 0.17 -0.8
3,332,071 + Psyr_2745 0.17 -0.2
3,332,071 + Psyr_2745 0.17 -0.2
3,332,072 - Psyr_2745 0.17 +1.3
3,332,072 - Psyr_2745 0.17 -1.4
3,332,075 + Psyr_2745 0.18 +1.2
3,332,075 + Psyr_2745 0.18 +1.6
3,332,076 - Psyr_2745 0.18 +0.5
3,332,076 - Psyr_2745 0.18 -1.5
3,332,091 + Psyr_2745 0.18 -0.2
3,332,579 + Psyr_2745 0.42 +0.6
3,332,580 - Psyr_2745 0.42 +2.0
3,332,580 - Psyr_2745 0.42 +0.5
3,332,621 + Psyr_2745 0.44 +0.2
3,332,621 + Psyr_2745 0.44 +0.8
3,332,622 - Psyr_2745 0.44 +2.2
3,332,622 - Psyr_2745 0.44 +0.3
3,332,622 - Psyr_2745 0.44 +0.8
3,332,643 + Psyr_2745 0.45 +0.8
3,332,644 - Psyr_2745 0.45 +1.2

Or see this region's nucleotide sequence