Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1058

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1057 and Psyr_1058 are separated by 14 nucleotidesPsyr_1058 and Psyr_1059 are separated by 26 nucleotides Psyr_1057: Psyr_1057 - alginate biosynthesis protein AlgX, at 1,195,942 to 1,197,381 _1057 Psyr_1058: Psyr_1058 - Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis, at 1,197,396 to 1,199,006 _1058 Psyr_1059: Psyr_1059 - alginate export porin, at 1,199,033 to 1,200,517 _1059 Position (kb) 1197 1198 1199 1200Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1196.399 kb on + strand, within Psyr_1057at 1196.400 kb on - strand, within Psyr_1057at 1196.465 kb on + strand, within Psyr_1057at 1196.465 kb on + strand, within Psyr_1057at 1196.531 kb on + strand, within Psyr_1057at 1196.531 kb on + strand, within Psyr_1057at 1196.531 kb on + strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.558 kb on + strand, within Psyr_1057at 1196.559 kb on - strand, within Psyr_1057at 1196.672 kb on + strand, within Psyr_1057at 1196.672 kb on + strand, within Psyr_1057at 1196.673 kb on - strand, within Psyr_1057at 1196.752 kb on - strand, within Psyr_1057at 1196.752 kb on - strand, within Psyr_1057at 1196.784 kb on + strand, within Psyr_1057at 1196.784 kb on + strand, within Psyr_1057at 1196.784 kb on + strand, within Psyr_1057at 1196.829 kb on + strand, within Psyr_1057at 1196.844 kb on - strand, within Psyr_1057at 1196.873 kb on + strand, within Psyr_1057at 1196.873 kb on + strand, within Psyr_1057at 1196.873 kb on + strand, within Psyr_1057at 1196.963 kb on + strand, within Psyr_1057at 1196.964 kb on - strand, within Psyr_1057at 1196.964 kb on - strand, within Psyr_1057at 1197.213 kb on - strand, within Psyr_1057at 1197.224 kb on + strand, within Psyr_1057at 1197.381 kb on + strandat 1197.381 kb on + strandat 1197.382 kb on - strandat 1197.388 kb on - strandat 1197.528 kb on - strandat 1197.761 kb on + strand, within Psyr_1058at 1197.761 kb on + strand, within Psyr_1058at 1197.761 kb on + strand, within Psyr_1058at 1197.832 kb on + strand, within Psyr_1058at 1197.863 kb on - strand, within Psyr_1058at 1197.875 kb on - strand, within Psyr_1058at 1198.067 kb on - strand, within Psyr_1058at 1198.120 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.216 kb on + strand, within Psyr_1058at 1198.217 kb on - strand, within Psyr_1058at 1198.226 kb on + strand, within Psyr_1058at 1198.227 kb on - strand, within Psyr_1058at 1198.227 kb on - strand, within Psyr_1058at 1198.227 kb on - strand, within Psyr_1058at 1198.256 kb on - strand, within Psyr_1058at 1198.345 kb on + strand, within Psyr_1058at 1198.346 kb on - strand, within Psyr_1058at 1198.522 kb on + strand, within Psyr_1058at 1198.522 kb on + strand, within Psyr_1058at 1198.522 kb on + strand, within Psyr_1058at 1198.522 kb on + strand, within Psyr_1058at 1198.522 kb on + strand, within Psyr_1058at 1198.523 kb on - strand, within Psyr_1058at 1198.523 kb on - strand, within Psyr_1058at 1198.523 kb on - strand, within Psyr_1058at 1198.763 kb on + strand, within Psyr_1058at 1198.765 kb on + strand, within Psyr_1058at 1198.766 kb on - strand, within Psyr_1058at 1198.834 kb on + strand, within Psyr_1058at 1198.835 kb on - strand, within Psyr_1058at 1198.835 kb on - strand, within Psyr_1058at 1198.835 kb on - strand, within Psyr_1058at 1198.994 kb on + strandat 1198.994 kb on + strandat 1198.994 kb on + strandat 1198.994 kb on + strandat 1198.994 kb on + strandat 1198.994 kb on + strandat 1198.995 kb on - strandat 1198.995 kb on - strandat 1198.995 kb on - strandat 1198.995 kb on - strandat 1198.995 kb on - strandat 1198.995 kb on - strandat 1199.073 kb on + strandat 1199.073 kb on + strandat 1199.073 kb on + strandat 1199.073 kb on + strandat 1199.073 kb on + strandat 1199.073 kb on + strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.094 kb on + strandat 1199.196 kb on + strand, within Psyr_1059at 1199.196 kb on + strand, within Psyr_1059at 1199.196 kb on + strand, within Psyr_1059at 1199.196 kb on + strand, within Psyr_1059at 1199.196 kb on + strand, within Psyr_1059at 1199.197 kb on - strand, within Psyr_1059at 1199.197 kb on - strand, within Psyr_1059at 1199.197 kb on - strand, within Psyr_1059at 1199.197 kb on - strand, within Psyr_1059at 1199.197 kb on - strand, within Psyr_1059at 1199.269 kb on + strand, within Psyr_1059at 1199.350 kb on - strand, within Psyr_1059at 1199.350 kb on - strand, within Psyr_1059at 1199.367 kb on + strand, within Psyr_1059at 1199.368 kb on - strand, within Psyr_1059at 1199.511 kb on + strand, within Psyr_1059at 1199.511 kb on + strand, within Psyr_1059at 1199.511 kb on + strand, within Psyr_1059at 1199.512 kb on - strand, within Psyr_1059at 1199.512 kb on - strand, within Psyr_1059at 1199.532 kb on + strand, within Psyr_1059at 1199.703 kb on + strand, within Psyr_1059at 1199.703 kb on + strand, within Psyr_1059at 1199.703 kb on + strand, within Psyr_1059at 1199.704 kb on - strand, within Psyr_1059at 1199.736 kb on + strand, within Psyr_1059at 1199.736 kb on + strand, within Psyr_1059at 1199.736 kb on + strand, within Psyr_1059at 1199.736 kb on + strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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1,196,399 + Psyr_1057 0.32 -1.0
1,196,400 - Psyr_1057 0.32 +0.6
1,196,465 + Psyr_1057 0.36 +1.7
1,196,465 + Psyr_1057 0.36 +0.4
1,196,531 + Psyr_1057 0.41 -0.0
1,196,531 + Psyr_1057 0.41 +0.2
1,196,531 + Psyr_1057 0.41 -0.6
1,196,532 - Psyr_1057 0.41 +0.3
1,196,532 - Psyr_1057 0.41 +1.3
1,196,532 - Psyr_1057 0.41 +0.4
1,196,532 - Psyr_1057 0.41 +0.4
1,196,532 - Psyr_1057 0.41 +0.3
1,196,558 + Psyr_1057 0.43 -0.8
1,196,559 - Psyr_1057 0.43 -0.0
1,196,672 + Psyr_1057 0.51 -0.6
1,196,672 + Psyr_1057 0.51 +0.2
1,196,673 - Psyr_1057 0.51 +0.3
1,196,752 - Psyr_1057 0.56 -1.1
1,196,752 - Psyr_1057 0.56 -0.1
1,196,784 + Psyr_1057 0.58 -0.3
1,196,784 + Psyr_1057 0.58 +0.4
1,196,784 + Psyr_1057 0.58 +1.6
1,196,829 + Psyr_1057 0.62 -0.3
1,196,844 - Psyr_1057 0.63 -0.3
1,196,873 + Psyr_1057 0.65 -1.5
1,196,873 + Psyr_1057 0.65 +0.1
1,196,873 + Psyr_1057 0.65 +0.3
1,196,963 + Psyr_1057 0.71 -0.6
1,196,964 - Psyr_1057 0.71 +1.3
1,196,964 - Psyr_1057 0.71 -1.0
1,197,213 - Psyr_1057 0.88 +1.8
1,197,224 + Psyr_1057 0.89 +0.2
1,197,381 + +0.5
1,197,381 + -1.5
1,197,382 - -2.1
1,197,388 - -0.2
1,197,528 - -0.7
1,197,761 + Psyr_1058 0.23 -0.0
1,197,761 + Psyr_1058 0.23 -0.3
1,197,761 + Psyr_1058 0.23 +2.0
1,197,832 + Psyr_1058 0.27 +0.1
1,197,863 - Psyr_1058 0.29 -0.4
1,197,875 - Psyr_1058 0.30 -2.6
1,198,067 - Psyr_1058 0.42 -1.5
1,198,120 + Psyr_1058 0.45 -0.3
1,198,126 + Psyr_1058 0.45 -0.5
1,198,126 + Psyr_1058 0.45 -0.7
1,198,126 + Psyr_1058 0.45 -1.6
1,198,126 + Psyr_1058 0.45 -1.8
1,198,126 + Psyr_1058 0.45 -0.8
1,198,126 + Psyr_1058 0.45 -1.1
1,198,126 + Psyr_1058 0.45 +0.2
1,198,127 - Psyr_1058 0.45 +1.6
1,198,127 - Psyr_1058 0.45 -0.2
1,198,127 - Psyr_1058 0.45 -1.9
1,198,127 - Psyr_1058 0.45 -0.7
1,198,127 - Psyr_1058 0.45 -0.6
1,198,216 + Psyr_1058 0.51 +2.0
1,198,217 - Psyr_1058 0.51 -1.3
1,198,226 + Psyr_1058 0.52 -0.0
1,198,227 - Psyr_1058 0.52 -0.9
1,198,227 - Psyr_1058 0.52 -0.7
1,198,227 - Psyr_1058 0.52 +0.5
1,198,256 - Psyr_1058 0.53 -0.2
1,198,345 + Psyr_1058 0.59 -0.4
1,198,346 - Psyr_1058 0.59 -0.8
1,198,522 + Psyr_1058 0.70 +0.7
1,198,522 + Psyr_1058 0.70 -0.4
1,198,522 + Psyr_1058 0.70 -0.6
1,198,522 + Psyr_1058 0.70 -0.3
1,198,522 + Psyr_1058 0.70 -0.1
1,198,523 - Psyr_1058 0.70 -0.9
1,198,523 - Psyr_1058 0.70 -0.2
1,198,523 - Psyr_1058 0.70 +0.4
1,198,763 + Psyr_1058 0.85 +1.1
1,198,765 + Psyr_1058 0.85 +0.3
1,198,766 - Psyr_1058 0.85 -0.0
1,198,834 + Psyr_1058 0.89 -0.4
1,198,835 - Psyr_1058 0.89 -1.3
1,198,835 - Psyr_1058 0.89 -0.1
1,198,835 - Psyr_1058 0.89 -0.6
1,198,994 + +1.6
1,198,994 + -0.2
1,198,994 + -1.2
1,198,994 + +0.1
1,198,994 + +0.8
1,198,994 + +0.6
1,198,995 - -0.2
1,198,995 - +1.1
1,198,995 - -0.5
1,198,995 - +2.0
1,198,995 - +0.5
1,198,995 - -0.5
1,199,073 + -0.2
1,199,073 + -1.0
1,199,073 + +0.4
1,199,073 + -1.1
1,199,073 + +0.9
1,199,073 + +1.0
1,199,074 - +0.5
1,199,074 - +0.4
1,199,074 - +1.0
1,199,074 - +0.4
1,199,074 - -1.6
1,199,074 - -2.1
1,199,074 - -0.3
1,199,074 - -0.4
1,199,094 + -0.9
1,199,196 + Psyr_1059 0.11 -0.2
1,199,196 + Psyr_1059 0.11 -0.0
1,199,196 + Psyr_1059 0.11 +0.3
1,199,196 + Psyr_1059 0.11 +0.3
1,199,196 + Psyr_1059 0.11 -0.3
1,199,197 - Psyr_1059 0.11 +2.0
1,199,197 - Psyr_1059 0.11 -2.9
1,199,197 - Psyr_1059 0.11 +0.2
1,199,197 - Psyr_1059 0.11 +0.3
1,199,197 - Psyr_1059 0.11 +0.1
1,199,269 + Psyr_1059 0.16 +0.1
1,199,350 - Psyr_1059 0.21 +0.6
1,199,350 - Psyr_1059 0.21 -0.7
1,199,367 + Psyr_1059 0.22 -1.8
1,199,368 - Psyr_1059 0.23 +0.8
1,199,511 + Psyr_1059 0.32 -0.3
1,199,511 + Psyr_1059 0.32 -1.6
1,199,511 + Psyr_1059 0.32 -1.8
1,199,512 - Psyr_1059 0.32 -0.7
1,199,512 - Psyr_1059 0.32 +0.2
1,199,532 + Psyr_1059 0.34 -0.1
1,199,703 + Psyr_1059 0.45 +0.3
1,199,703 + Psyr_1059 0.45 -0.7
1,199,703 + Psyr_1059 0.45 +1.4
1,199,704 - Psyr_1059 0.45 -0.8
1,199,736 + Psyr_1059 0.47 -0.2
1,199,736 + Psyr_1059 0.47 +0.4
1,199,736 + Psyr_1059 0.47 +0.3
1,199,736 + Psyr_1059 0.47 +0.4
1,199,737 - Psyr_1059 0.47 +0.5
1,199,737 - Psyr_1059 0.47 -0.2
1,199,737 - Psyr_1059 0.47 -0.3
1,199,737 - Psyr_1059 0.47 +1.0
1,199,737 - Psyr_1059 0.47 +0.7

Or see this region's nucleotide sequence