Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0298 and Psyr_0299 are separated by 250 nucleotides Psyr_0299 and Psyr_0300 are separated by 121 nucleotides Psyr_0300 and Psyr_0301 are separated by 231 nucleotides
Psyr_0298: Psyr_0298 - amino acid ABC transporter substrate-binding protein, PAAT family, at 317,876 to 318,661
_0298
Psyr_0299: Psyr_0299 - transcriptional regulator, GntR family, at 318,912 to 319,616
_0299
Psyr_0300: Psyr_0300 - Thioredoxin, at 319,738 to 320,088
_0300
Psyr_0301: Psyr_0301 - transcription termination factor Rho, at 320,320 to 321,579
_0301
Position (kb) 318
319
320 Strain fitness (log2 ratio) -2
-1
0
1
2 at 317.933 kb on - strand at 318.009 kb on + strand, within Psyr_0298 at 318.009 kb on + strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.126 kb on + strand, within Psyr_0298 at 318.232 kb on + strand, within Psyr_0298 at 318.232 kb on + strand, within Psyr_0298 at 318.232 kb on + strand, within Psyr_0298 at 318.233 kb on - strand, within Psyr_0298 at 318.233 kb on - strand, within Psyr_0298 at 318.297 kb on + strand, within Psyr_0298 at 318.298 kb on - strand, within Psyr_0298 at 318.298 kb on - strand, within Psyr_0298 at 318.298 kb on - strand, within Psyr_0298 at 318.298 kb on - strand, within Psyr_0298 at 318.309 kb on + strand, within Psyr_0298 at 318.472 kb on + strand, within Psyr_0298 at 318.635 kb on - strand at 318.635 kb on - strand at 318.661 kb on + strand at 318.661 kb on + strand at 318.662 kb on - strand at 318.662 kb on - strand at 318.662 kb on - strand at 318.662 kb on - strand at 318.762 kb on + strand at 318.763 kb on - strand at 318.818 kb on + strand at 318.819 kb on - strand at 318.874 kb on - strand at 318.984 kb on + strand, within Psyr_0299 at 318.985 kb on - strand, within Psyr_0299 at 319.173 kb on + strand, within Psyr_0299 at 319.173 kb on + strand, within Psyr_0299 at 319.174 kb on - strand, within Psyr_0299 at 319.174 kb on - strand, within Psyr_0299 at 319.279 kb on + strand, within Psyr_0299 at 319.279 kb on + strand, within Psyr_0299 at 319.279 kb on + strand, within Psyr_0299 at 319.279 kb on + strand, within Psyr_0299 at 319.279 kb on + strand, within Psyr_0299 at 319.279 kb on + strand, within Psyr_0299 at 319.562 kb on + strand at 319.562 kb on + strand at 319.563 kb on - strand at 319.619 kb on + strand at 319.619 kb on + strand at 319.619 kb on + strand at 319.619 kb on + strand at 319.619 kb on + strand at 319.620 kb on - strand at 319.620 kb on - strand at 319.627 kb on + strand at 319.644 kb on + strand at 319.645 kb on - strand at 319.645 kb on - strand at 319.645 kb on - strand at 319.645 kb on - strand at 319.681 kb on + strand at 319.719 kb on + strand at 320.076 kb on + strand at 320.135 kb on - strand at 320.137 kb on + strand at 320.160 kb on + strand at 320.228 kb on + strand at 320.231 kb on + strand at 320.282 kb on + strand at 320.297 kb on + strand at 320.297 kb on + strand at 320.297 kb on + strand at 320.297 kb on + strand at 320.297 kb on + strand at 320.297 kb on + strand at 320.297 kb on + strand at 320.297 kb on + strand at 320.305 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 317,933 - +0.6 318,009 + Psyr_0298 0.17 -0.1 318,009 + Psyr_0298 0.17 -1.1 318,010 - Psyr_0298 0.17 +0.2 318,010 - Psyr_0298 0.17 +0.4 318,010 - Psyr_0298 0.17 +0.6 318,010 - Psyr_0298 0.17 +0.2 318,010 - Psyr_0298 0.17 -0.1 318,010 - Psyr_0298 0.17 -0.9 318,010 - Psyr_0298 0.17 -0.4 318,126 + Psyr_0298 0.32 -0.7 318,232 + Psyr_0298 0.45 +0.2 318,232 + Psyr_0298 0.45 +0.6 318,232 + Psyr_0298 0.45 +0.0 318,233 - Psyr_0298 0.45 -0.8 318,233 - Psyr_0298 0.45 -0.9 318,297 + Psyr_0298 0.54 -0.3 318,298 - Psyr_0298 0.54 -0.0 318,298 - Psyr_0298 0.54 +0.1 318,298 - Psyr_0298 0.54 +0.2 318,298 - Psyr_0298 0.54 +0.6 318,309 + Psyr_0298 0.55 +0.2 318,472 + Psyr_0298 0.76 +0.6 318,635 - +0.4 318,635 - +0.0 318,661 + -2.0 318,661 + -0.1 318,662 - -0.2 318,662 - -0.5 318,662 - +0.5 318,662 - -0.1 318,762 + -0.2 318,763 - +0.1 318,818 + -0.2 318,819 - -1.0 318,874 - -0.7 318,984 + Psyr_0299 0.10 -2.4 318,985 - Psyr_0299 0.10 +0.6 319,173 + Psyr_0299 0.37 +0.2 319,173 + Psyr_0299 0.37 +0.1 319,174 - Psyr_0299 0.37 +0.7 319,174 - Psyr_0299 0.37 +0.1 319,279 + Psyr_0299 0.52 +0.8 319,279 + Psyr_0299 0.52 +0.3 319,279 + Psyr_0299 0.52 +0.5 319,279 + Psyr_0299 0.52 -0.5 319,279 + Psyr_0299 0.52 +1.3 319,279 + Psyr_0299 0.52 -1.0 319,562 + -0.4 319,562 + +1.2 319,563 - -0.6 319,619 + +1.2 319,619 + -0.1 319,619 + -0.4 319,619 + -0.3 319,619 + -0.8 319,620 - +0.1 319,620 - +0.7 319,627 + +0.0 319,644 + +0.3 319,645 - -1.1 319,645 - -0.3 319,645 - +0.3 319,645 - +1.5 319,681 + -2.0 319,719 + -0.6 320,076 + -1.4 320,135 - -0.4 320,137 + -0.0 320,160 + -0.4 320,228 + +0.4 320,231 + +0.8 320,282 + -1.6 320,297 + +0.7 320,297 + +1.9 320,297 + -0.1 320,297 + -1.6 320,297 + +0.2 320,297 + +0.3 320,297 + +1.8 320,297 + +0.2 320,305 + +0.3
Or see this region's nucleotide sequence