Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1448 and EX28DRAFT_1449 are separated by 585 nucleotides EX28DRAFT_1449 and EX28DRAFT_1450 are separated by 142 nucleotides EX28DRAFT_1450 and EX28DRAFT_1451 are separated by 91 nucleotides
EX28DRAFT_1448: EX28DRAFT_1448 - Bacterial regulatory proteins, luxR family, at 1,461,133 to 1,461,714
_1448
EX28DRAFT_1449: EX28DRAFT_1449 - Zn-dependent oligopeptidases, at 1,462,300 to 1,464,333
_1449
EX28DRAFT_1450: EX28DRAFT_1450 - Short-chain alcohol dehydrogenase of unknown specificity, at 1,464,476 to 1,465,222
_1450
EX28DRAFT_1451: EX28DRAFT_1451 - Transcriptional regulators, at 1,465,314 to 1,466,000
_1451
Position (kb) 1462
1463
1464
1465 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1461.388 kb on - strand, within EX28DRAFT_1448 at 1461.593 kb on - strand, within EX28DRAFT_1448 at 1461.908 kb on + strand at 1462.121 kb on + strand at 1462.197 kb on - strand at 1462.243 kb on + strand at 1462.301 kb on + strand at 1462.302 kb on - strand at 1462.502 kb on + strand at 1462.502 kb on + strand at 1462.509 kb on - strand, within EX28DRAFT_1449 at 1462.509 kb on - strand, within EX28DRAFT_1449 at 1462.550 kb on + strand, within EX28DRAFT_1449 at 1462.551 kb on - strand, within EX28DRAFT_1449 at 1462.998 kb on + strand, within EX28DRAFT_1449 at 1463.009 kb on + strand, within EX28DRAFT_1449 at 1463.010 kb on - strand, within EX28DRAFT_1449 at 1463.230 kb on + strand, within EX28DRAFT_1449 at 1463.294 kb on + strand, within EX28DRAFT_1449 at 1463.295 kb on - strand, within EX28DRAFT_1449 at 1463.295 kb on - strand, within EX28DRAFT_1449 at 1463.324 kb on + strand, within EX28DRAFT_1449 at 1463.440 kb on - strand, within EX28DRAFT_1449 at 1464.074 kb on + strand, within EX28DRAFT_1449 at 1464.251 kb on + strand at 1464.368 kb on - strand at 1464.437 kb on + strand at 1464.445 kb on + strand at 1464.556 kb on + strand, within EX28DRAFT_1450 at 1464.809 kb on + strand, within EX28DRAFT_1450 at 1464.809 kb on + strand, within EX28DRAFT_1450 at 1464.809 kb on + strand, within EX28DRAFT_1450 at 1464.809 kb on + strand, within EX28DRAFT_1450 at 1464.810 kb on - strand, within EX28DRAFT_1450 at 1464.810 kb on - strand, within EX28DRAFT_1450 at 1464.811 kb on + strand, within EX28DRAFT_1450 at 1464.868 kb on + strand, within EX28DRAFT_1450 at 1464.914 kb on + strand, within EX28DRAFT_1450 at 1464.961 kb on + strand, within EX28DRAFT_1450 at 1465.162 kb on + strand at 1465.162 kb on + strand at 1465.162 kb on + strand at 1465.221 kb on - strand at 1465.276 kb on + strand at 1465.276 kb on + strand at 1465.276 kb on + strand at 1465.276 kb on + strand at 1465.277 kb on - strand at 1465.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,461,388 - EX28DRAFT_1448 0.44 -0.1 1,461,593 - EX28DRAFT_1448 0.79 +0.1 1,461,908 + -0.2 1,462,121 + +0.3 1,462,197 - +1.2 1,462,243 + +0.4 1,462,301 + -0.1 1,462,302 - +0.6 1,462,502 + +1.0 1,462,502 + +1.0 1,462,509 - EX28DRAFT_1449 0.10 +0.9 1,462,509 - EX28DRAFT_1449 0.10 -1.9 1,462,550 + EX28DRAFT_1449 0.12 +1.6 1,462,551 - EX28DRAFT_1449 0.12 +0.9 1,462,998 + EX28DRAFT_1449 0.34 +0.2 1,463,009 + EX28DRAFT_1449 0.35 +0.9 1,463,010 - EX28DRAFT_1449 0.35 -0.4 1,463,230 + EX28DRAFT_1449 0.46 +1.9 1,463,294 + EX28DRAFT_1449 0.49 +0.2 1,463,295 - EX28DRAFT_1449 0.49 +0.9 1,463,295 - EX28DRAFT_1449 0.49 +1.0 1,463,324 + EX28DRAFT_1449 0.50 -0.1 1,463,440 - EX28DRAFT_1449 0.56 +0.5 1,464,074 + EX28DRAFT_1449 0.87 +0.5 1,464,251 + +1.9 1,464,368 - +0.2 1,464,437 + +0.3 1,464,445 + -0.4 1,464,556 + EX28DRAFT_1450 0.11 +0.1 1,464,809 + EX28DRAFT_1450 0.45 -0.6 1,464,809 + EX28DRAFT_1450 0.45 -0.4 1,464,809 + EX28DRAFT_1450 0.45 +0.7 1,464,809 + EX28DRAFT_1450 0.45 -1.5 1,464,810 - EX28DRAFT_1450 0.45 -1.2 1,464,810 - EX28DRAFT_1450 0.45 -0.1 1,464,811 + EX28DRAFT_1450 0.45 -0.6 1,464,868 + EX28DRAFT_1450 0.52 +0.0 1,464,914 + EX28DRAFT_1450 0.59 -0.9 1,464,961 + EX28DRAFT_1450 0.65 -0.2 1,465,162 + -0.1 1,465,162 + +0.5 1,465,162 + +0.4 1,465,221 - +0.4 1,465,276 + -1.4 1,465,276 + -1.8 1,465,276 + -1.3 1,465,276 + +0.2 1,465,277 - -0.3 1,465,277 - +0.6
Or see this region's nucleotide sequence