Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0319 and EX28DRAFT_0320 are separated by 937 nucleotides EX28DRAFT_0320 and EX28DRAFT_0321 are separated by 631 nucleotides
EX28DRAFT_0319: EX28DRAFT_0319 - Aspartate/tyrosine/aromatic aminotransferase, at 278,896 to 280,110
_0319
EX28DRAFT_0320: EX28DRAFT_0320 - Transcriptional regulator, at 281,048 to 281,986
_0320
EX28DRAFT_0321: EX28DRAFT_0321 - NADH:ubiquinone oxidoreductase subunit 3 (chain A), at 282,618 to 283,058
_0321
Position (kb) 281
282 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 280.068 kb on - strand at 280.081 kb on + strand at 280.133 kb on + strand at 280.169 kb on - strand at 280.444 kb on - strand at 280.479 kb on + strand at 280.524 kb on - strand at 280.534 kb on + strand at 280.549 kb on + strand at 280.604 kb on + strand at 280.612 kb on + strand at 280.612 kb on + strand at 280.613 kb on - strand at 280.620 kb on - strand at 280.622 kb on - strand at 280.622 kb on - strand at 280.767 kb on + strand at 280.807 kb on + strand at 280.815 kb on + strand at 280.846 kb on - strand at 280.908 kb on + strand at 280.908 kb on + strand at 280.908 kb on + strand at 280.910 kb on + strand at 280.910 kb on + strand at 280.923 kb on + strand at 280.923 kb on + strand at 280.923 kb on + strand at 280.924 kb on - strand at 280.927 kb on + strand at 280.928 kb on - strand at 280.986 kb on + strand at 280.987 kb on - strand at 281.043 kb on + strand at 281.043 kb on + strand at 281.044 kb on - strand at 281.047 kb on + strand at 281.048 kb on - strand at 281.048 kb on - strand at 281.048 kb on - strand at 281.236 kb on + strand, within EX28DRAFT_0320 at 281.269 kb on - strand, within EX28DRAFT_0320 at 281.277 kb on - strand, within EX28DRAFT_0320 at 281.315 kb on - strand, within EX28DRAFT_0320 at 281.315 kb on - strand, within EX28DRAFT_0320 at 281.329 kb on + strand, within EX28DRAFT_0320 at 281.383 kb on + strand, within EX28DRAFT_0320 at 281.384 kb on - strand, within EX28DRAFT_0320 at 281.384 kb on - strand, within EX28DRAFT_0320 at 281.385 kb on + strand, within EX28DRAFT_0320 at 281.411 kb on - strand, within EX28DRAFT_0320 at 281.567 kb on + strand, within EX28DRAFT_0320 at 281.583 kb on - strand, within EX28DRAFT_0320 at 281.696 kb on + strand, within EX28DRAFT_0320 at 281.696 kb on + strand, within EX28DRAFT_0320 at 281.838 kb on - strand, within EX28DRAFT_0320 at 281.912 kb on - strand at 281.936 kb on - strand at 282.209 kb on + strand at 282.525 kb on - strand at 282.535 kb on + strand at 282.535 kb on + strand at 282.596 kb on + strand at 282.624 kb on - strand at 282.678 kb on - strand, within EX28DRAFT_0321
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 280,068 - +1.4 280,081 + -0.1 280,133 + -0.6 280,169 - +0.5 280,444 - -0.1 280,479 + -3.1 280,524 - +0.6 280,534 + +0.2 280,549 + +0.1 280,604 + +0.7 280,612 + +0.9 280,612 + -0.4 280,613 - +0.4 280,620 - -0.3 280,622 - +0.3 280,622 - +0.7 280,767 + -0.5 280,807 + -0.4 280,815 + +0.4 280,846 - +0.9 280,908 + +0.6 280,908 + +0.8 280,908 + +0.1 280,910 + +0.5 280,910 + +0.9 280,923 + -0.1 280,923 + +2.5 280,923 + +4.2 280,924 - +0.5 280,927 + +0.7 280,928 - +0.6 280,986 + +1.4 280,987 - -1.0 281,043 + +0.1 281,043 + +1.7 281,044 - +1.4 281,047 + +0.2 281,048 - -1.6 281,048 - +1.2 281,048 - +1.0 281,236 + EX28DRAFT_0320 0.20 +1.0 281,269 - EX28DRAFT_0320 0.24 +0.7 281,277 - EX28DRAFT_0320 0.24 +0.1 281,315 - EX28DRAFT_0320 0.28 +1.8 281,315 - EX28DRAFT_0320 0.28 +0.9 281,329 + EX28DRAFT_0320 0.30 +1.2 281,383 + EX28DRAFT_0320 0.36 -0.3 281,384 - EX28DRAFT_0320 0.36 +0.8 281,384 - EX28DRAFT_0320 0.36 +0.0 281,385 + EX28DRAFT_0320 0.36 +0.3 281,411 - EX28DRAFT_0320 0.39 -0.8 281,567 + EX28DRAFT_0320 0.55 +0.6 281,583 - EX28DRAFT_0320 0.57 +0.5 281,696 + EX28DRAFT_0320 0.69 +2.6 281,696 + EX28DRAFT_0320 0.69 +0.9 281,838 - EX28DRAFT_0320 0.84 +0.6 281,912 - -0.1 281,936 - -0.9 282,209 + -1.7 282,525 - -4.0 282,535 + -0.9 282,535 + -1.4 282,596 + -0.2 282,624 - -1.1 282,678 - EX28DRAFT_0321 0.14 -4.4
Or see this region's nucleotide sequence