Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0179 and EX28DRAFT_0180 are separated by 95 nucleotides EX28DRAFT_0180 and EX28DRAFT_0181 overlap by 1 nucleotides EX28DRAFT_0181 and EX28DRAFT_0182 are separated by 145 nucleotides
EX28DRAFT_0179: EX28DRAFT_0179 - Predicted permease, at 129,221 to 130,285
_0179
EX28DRAFT_0180: EX28DRAFT_0180 - Peroxiredoxin, at 130,381 to 130,851
_0180
EX28DRAFT_0181: EX28DRAFT_0181 - Glycine cleavage system regulatory protein, at 130,851 to 131,420
_0181
EX28DRAFT_0182: EX28DRAFT_0182 - 4-hydroxy-tetrahydrodipicolinate synthase, at 131,566 to 132,444
_0182
Position (kb) 130
131 Strain fitness (log2 ratio) -2
-1
0
1
2 at 129.438 kb on + strand, within EX28DRAFT_0179 at 129.671 kb on + strand, within EX28DRAFT_0179 at 129.672 kb on - strand, within EX28DRAFT_0179 at 129.714 kb on - strand, within EX28DRAFT_0179 at 129.714 kb on - strand, within EX28DRAFT_0179 at 129.714 kb on - strand, within EX28DRAFT_0179 at 129.854 kb on + strand, within EX28DRAFT_0179 at 129.855 kb on - strand, within EX28DRAFT_0179 at 129.855 kb on - strand, within EX28DRAFT_0179 at 129.855 kb on - strand, within EX28DRAFT_0179 at 130.074 kb on - strand, within EX28DRAFT_0179 at 130.082 kb on - strand, within EX28DRAFT_0179 at 130.156 kb on + strand, within EX28DRAFT_0179 at 130.157 kb on - strand, within EX28DRAFT_0179 at 130.283 kb on + strand at 130.283 kb on + strand at 130.498 kb on - strand, within EX28DRAFT_0180 at 130.555 kb on + strand, within EX28DRAFT_0180 at 130.853 kb on - strand at 130.896 kb on + strand at 130.899 kb on - strand at 130.986 kb on - strand, within EX28DRAFT_0181 at 131.055 kb on - strand, within EX28DRAFT_0181 at 131.128 kb on - strand, within EX28DRAFT_0181 at 131.268 kb on - strand, within EX28DRAFT_0181 at 131.268 kb on - strand, within EX28DRAFT_0181 at 131.270 kb on + strand, within EX28DRAFT_0181 at 131.271 kb on - strand, within EX28DRAFT_0181 at 131.316 kb on - strand, within EX28DRAFT_0181 at 131.444 kb on - strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.480 kb on - strand at 131.480 kb on - strand at 131.480 kb on - strand at 131.480 kb on - strand at 131.480 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 129,438 + EX28DRAFT_0179 0.20 +0.1 129,671 + EX28DRAFT_0179 0.42 -0.9 129,672 - EX28DRAFT_0179 0.42 -0.1 129,714 - EX28DRAFT_0179 0.46 +0.4 129,714 - EX28DRAFT_0179 0.46 +0.7 129,714 - EX28DRAFT_0179 0.46 +0.4 129,854 + EX28DRAFT_0179 0.59 +0.6 129,855 - EX28DRAFT_0179 0.60 -1.2 129,855 - EX28DRAFT_0179 0.60 -1.2 129,855 - EX28DRAFT_0179 0.60 -0.6 130,074 - EX28DRAFT_0179 0.80 +0.6 130,082 - EX28DRAFT_0179 0.81 +0.5 130,156 + EX28DRAFT_0179 0.88 +0.5 130,157 - EX28DRAFT_0179 0.88 -0.3 130,283 + -2.0 130,283 + -0.1 130,498 - EX28DRAFT_0180 0.25 +1.2 130,555 + EX28DRAFT_0180 0.37 +0.3 130,853 - -0.5 130,896 + -0.8 130,899 - +0.6 130,986 - EX28DRAFT_0181 0.24 -1.1 131,055 - EX28DRAFT_0181 0.36 +1.2 131,128 - EX28DRAFT_0181 0.49 -1.0 131,268 - EX28DRAFT_0181 0.73 +0.4 131,268 - EX28DRAFT_0181 0.73 +1.2 131,270 + EX28DRAFT_0181 0.74 -0.2 131,271 - EX28DRAFT_0181 0.74 -0.4 131,316 - EX28DRAFT_0181 0.82 -1.0 131,444 - +0.1 131,479 + -0.5 131,479 + -0.3 131,479 + +0.3 131,479 + +2.5 131,479 + -0.2 131,479 + -0.1 131,479 + +0.2 131,479 + -1.0 131,479 + -0.6 131,480 - +0.0 131,480 - -0.3 131,480 - -0.7 131,480 - -1.9 131,480 - -0.7
Or see this region's nucleotide sequence