Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02357 and CCNA_02358 are separated by 75 nucleotides CCNA_02358 and CCNA_02359 are separated by 39 nucleotides
CCNA_02357: CCNA_02357 - methylmalonic acid semialdehyde dehydrogenase, at 2,496,500 to 2,497,996
_02357
CCNA_02358: CCNA_02358 - FMN reductase, at 2,498,072 to 2,498,596
_02358
CCNA_02359: CCNA_02359 - hypothetical protein, at 2,498,636 to 2,499,670
_02359
CCNA_02360: CCNA_02360 - glycosyl transferase family 2 protein, at 2,499,556 to 2,500,476
_02360
Position (kb)
2498
2499 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2497.103 kb on - strand, within CCNA_02357 at 2497.113 kb on - strand, within CCNA_02357 at 2497.118 kb on + strand, within CCNA_02357 at 2497.126 kb on - strand, within CCNA_02357 at 2497.126 kb on - strand, within CCNA_02357 at 2497.128 kb on + strand, within CCNA_02357 at 2497.150 kb on - strand, within CCNA_02357 at 2497.155 kb on - strand, within CCNA_02357 at 2497.155 kb on - strand, within CCNA_02357 at 2497.195 kb on - strand, within CCNA_02357 at 2497.200 kb on - strand, within CCNA_02357 at 2497.200 kb on - strand, within CCNA_02357 at 2497.211 kb on - strand, within CCNA_02357 at 2497.223 kb on + strand, within CCNA_02357 at 2497.226 kb on - strand, within CCNA_02357 at 2497.262 kb on - strand, within CCNA_02357 at 2497.284 kb on + strand, within CCNA_02357 at 2497.301 kb on - strand, within CCNA_02357 at 2497.302 kb on - strand, within CCNA_02357 at 2497.302 kb on - strand, within CCNA_02357 at 2497.312 kb on + strand, within CCNA_02357 at 2497.330 kb on - strand, within CCNA_02357 at 2497.355 kb on + strand, within CCNA_02357 at 2497.355 kb on + strand, within CCNA_02357 at 2497.363 kb on - strand, within CCNA_02357 at 2497.363 kb on - strand, within CCNA_02357 at 2497.397 kb on + strand, within CCNA_02357 at 2497.397 kb on + strand, within CCNA_02357 at 2497.403 kb on - strand, within CCNA_02357 at 2497.403 kb on - strand, within CCNA_02357 at 2497.405 kb on - strand, within CCNA_02357 at 2497.425 kb on + strand, within CCNA_02357 at 2497.563 kb on - strand, within CCNA_02357 at 2497.636 kb on - strand, within CCNA_02357 at 2497.650 kb on - strand, within CCNA_02357 at 2497.656 kb on + strand, within CCNA_02357 at 2497.675 kb on + strand, within CCNA_02357 at 2497.683 kb on - strand, within CCNA_02357 at 2497.690 kb on + strand, within CCNA_02357 at 2497.710 kb on + strand, within CCNA_02357 at 2497.716 kb on + strand, within CCNA_02357 at 2497.724 kb on - strand, within CCNA_02357 at 2497.724 kb on - strand, within CCNA_02357 at 2497.724 kb on - strand, within CCNA_02357 at 2497.731 kb on + strand, within CCNA_02357 at 2497.739 kb on + strand, within CCNA_02357 at 2497.748 kb on - strand, within CCNA_02357 at 2497.792 kb on - strand, within CCNA_02357 at 2497.817 kb on + strand, within CCNA_02357 at 2497.817 kb on + strand, within CCNA_02357 at 2497.832 kb on + strand, within CCNA_02357 at 2497.865 kb on + strand at 2497.898 kb on + strand at 2497.898 kb on + strand at 2497.906 kb on - strand at 2497.906 kb on - strand at 2497.955 kb on + strand at 2497.968 kb on - strand at 2498.005 kb on + strand at 2498.005 kb on + strand at 2498.034 kb on + strand at 2498.047 kb on - strand at 2498.136 kb on + strand, within CCNA_02358 at 2498.144 kb on - strand, within CCNA_02358 at 2498.166 kb on + strand, within CCNA_02358 at 2498.203 kb on - strand, within CCNA_02358 at 2498.258 kb on - strand, within CCNA_02358 at 2498.276 kb on - strand, within CCNA_02358 at 2498.357 kb on + strand, within CCNA_02358 at 2498.357 kb on + strand, within CCNA_02358 at 2498.365 kb on - strand, within CCNA_02358 at 2498.399 kb on - strand, within CCNA_02358 at 2498.403 kb on + strand, within CCNA_02358 at 2498.403 kb on + strand, within CCNA_02358 at 2498.403 kb on + strand, within CCNA_02358 at 2498.408 kb on + strand, within CCNA_02358 at 2498.411 kb on - strand, within CCNA_02358 at 2498.411 kb on - strand, within CCNA_02358 at 2498.411 kb on - strand, within CCNA_02358 at 2498.442 kb on - strand, within CCNA_02358 at 2498.450 kb on + strand, within CCNA_02358 at 2498.457 kb on + strand, within CCNA_02358 at 2498.496 kb on - strand, within CCNA_02358 at 2498.507 kb on - strand, within CCNA_02358 at 2498.534 kb on + strand, within CCNA_02358 at 2498.566 kb on + strand at 2498.567 kb on - strand at 2498.574 kb on - strand at 2498.574 kb on - strand at 2498.574 kb on - strand at 2498.574 kb on - strand at 2498.607 kb on - strand at 2498.627 kb on + strand at 2498.633 kb on + strand at 2498.633 kb on + strand at 2498.634 kb on + strand at 2498.641 kb on - strand at 2498.641 kb on - strand at 2498.642 kb on - strand at 2498.683 kb on + strand at 2498.691 kb on - strand at 2498.691 kb on - strand at 2498.725 kb on + strand at 2498.725 kb on + strand at 2498.770 kb on - strand, within CCNA_02359 at 2498.784 kb on - strand, within CCNA_02359 at 2498.784 kb on - strand, within CCNA_02359 at 2498.784 kb on - strand, within CCNA_02359 at 2498.819 kb on + strand, within CCNA_02359 at 2498.855 kb on + strand, within CCNA_02359 at 2498.897 kb on + strand, within CCNA_02359 at 2498.910 kb on - strand, within CCNA_02359 at 2498.970 kb on - strand, within CCNA_02359 at 2498.993 kb on - strand, within CCNA_02359 at 2498.993 kb on - strand, within CCNA_02359 at 2498.993 kb on - strand, within CCNA_02359 at 2499.041 kb on + strand, within CCNA_02359 at 2499.047 kb on - strand, within CCNA_02359 at 2499.086 kb on + strand, within CCNA_02359 at 2499.087 kb on + strand, within CCNA_02359 at 2499.087 kb on + strand, within CCNA_02359 at 2499.089 kb on - strand, within CCNA_02359 at 2499.095 kb on - strand, within CCNA_02359 at 2499.145 kb on - strand, within CCNA_02359 at 2499.145 kb on - strand, within CCNA_02359 at 2499.162 kb on - strand, within CCNA_02359 at 2499.181 kb on + strand, within CCNA_02359 at 2499.203 kb on + strand, within CCNA_02359 at 2499.208 kb on + strand, within CCNA_02359 at 2499.208 kb on + strand, within CCNA_02359 at 2499.208 kb on + strand, within CCNA_02359 at 2499.216 kb on - strand, within CCNA_02359 at 2499.256 kb on - strand, within CCNA_02359 at 2499.365 kb on + strand, within CCNA_02359 at 2499.365 kb on + strand, within CCNA_02359 at 2499.383 kb on - strand, within CCNA_02359 at 2499.427 kb on + strand, within CCNA_02359 at 2499.446 kb on + strand, within CCNA_02359 at 2499.446 kb on + strand, within CCNA_02359 at 2499.452 kb on + strand, within CCNA_02359 at 2499.454 kb on - strand, within CCNA_02359 at 2499.476 kb on + strand, within CCNA_02359 at 2499.484 kb on - strand, within CCNA_02359 at 2499.484 kb on - strand, within CCNA_02359 at 2499.484 kb on - strand, within CCNA_02359 at 2499.512 kb on + strand, within CCNA_02359 at 2499.512 kb on + strand, within CCNA_02359 at 2499.527 kb on - strand, within CCNA_02359 at 2499.527 kb on - strand, within CCNA_02359 at 2499.591 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,497,103 - CCNA_02357 0.40 +0.4 2,497,113 - CCNA_02357 0.41 +0.5 2,497,118 + CCNA_02357 0.41 +0.1 2,497,126 - CCNA_02357 0.42 +0.4 2,497,126 - CCNA_02357 0.42 +0.6 2,497,128 + CCNA_02357 0.42 -0.8 2,497,150 - CCNA_02357 0.43 +0.3 2,497,155 - CCNA_02357 0.44 +0.9 2,497,155 - CCNA_02357 0.44 +1.2 2,497,195 - CCNA_02357 0.46 +0.9 2,497,200 - CCNA_02357 0.47 +0.2 2,497,200 - CCNA_02357 0.47 -0.1 2,497,211 - CCNA_02357 0.47 -1.3 2,497,223 + CCNA_02357 0.48 +0.6 2,497,226 - CCNA_02357 0.48 -2.3 2,497,262 - CCNA_02357 0.51 +0.3 2,497,284 + CCNA_02357 0.52 -0.9 2,497,301 - CCNA_02357 0.54 +0.5 2,497,302 - CCNA_02357 0.54 +0.3 2,497,302 - CCNA_02357 0.54 +0.3 2,497,312 + CCNA_02357 0.54 -1.2 2,497,330 - CCNA_02357 0.55 -0.1 2,497,355 + CCNA_02357 0.57 +0.7 2,497,355 + CCNA_02357 0.57 -1.2 2,497,363 - CCNA_02357 0.58 -0.6 2,497,363 - CCNA_02357 0.58 +0.2 2,497,397 + CCNA_02357 0.60 -0.8 2,497,397 + CCNA_02357 0.60 -0.3 2,497,403 - CCNA_02357 0.60 +0.9 2,497,403 - CCNA_02357 0.60 -0.0 2,497,405 - CCNA_02357 0.60 +0.9 2,497,425 + CCNA_02357 0.62 -1.0 2,497,563 - CCNA_02357 0.71 +0.2 2,497,636 - CCNA_02357 0.76 +0.5 2,497,650 - CCNA_02357 0.77 +0.4 2,497,656 + CCNA_02357 0.77 +0.5 2,497,675 + CCNA_02357 0.78 -1.6 2,497,683 - CCNA_02357 0.79 +0.2 2,497,690 + CCNA_02357 0.79 -1.1 2,497,710 + CCNA_02357 0.81 -0.8 2,497,716 + CCNA_02357 0.81 +0.2 2,497,724 - CCNA_02357 0.82 -1.6 2,497,724 - CCNA_02357 0.82 +1.0 2,497,724 - CCNA_02357 0.82 +1.7 2,497,731 + CCNA_02357 0.82 -0.4 2,497,739 + CCNA_02357 0.83 -0.7 2,497,748 - CCNA_02357 0.83 -0.6 2,497,792 - CCNA_02357 0.86 -0.2 2,497,817 + CCNA_02357 0.88 -0.2 2,497,817 + CCNA_02357 0.88 +0.0 2,497,832 + CCNA_02357 0.89 -1.5 2,497,865 + -0.3 2,497,898 + -0.9 2,497,898 + -1.1 2,497,906 - -0.2 2,497,906 - +1.1 2,497,955 + -0.4 2,497,968 - +0.0 2,498,005 + -0.6 2,498,005 + +0.7 2,498,034 + -0.0 2,498,047 - +0.2 2,498,136 + CCNA_02358 0.12 +0.1 2,498,144 - CCNA_02358 0.14 +0.1 2,498,166 + CCNA_02358 0.18 -0.7 2,498,203 - CCNA_02358 0.25 -0.2 2,498,258 - CCNA_02358 0.35 -0.7 2,498,276 - CCNA_02358 0.39 -1.1 2,498,357 + CCNA_02358 0.54 -0.9 2,498,357 + CCNA_02358 0.54 -0.9 2,498,365 - CCNA_02358 0.56 -0.1 2,498,399 - CCNA_02358 0.62 -0.1 2,498,403 + CCNA_02358 0.63 -2.4 2,498,403 + CCNA_02358 0.63 +0.3 2,498,403 + CCNA_02358 0.63 -0.6 2,498,408 + CCNA_02358 0.64 +1.4 2,498,411 - CCNA_02358 0.65 -0.5 2,498,411 - CCNA_02358 0.65 +0.9 2,498,411 - CCNA_02358 0.65 +0.4 2,498,442 - CCNA_02358 0.70 +0.5 2,498,450 + CCNA_02358 0.72 +0.1 2,498,457 + CCNA_02358 0.73 -0.0 2,498,496 - CCNA_02358 0.81 -0.3 2,498,507 - CCNA_02358 0.83 +0.2 2,498,534 + CCNA_02358 0.88 -0.2 2,498,566 + -0.7 2,498,567 - +0.9 2,498,574 - +0.1 2,498,574 - +0.5 2,498,574 - -0.7 2,498,574 - +1.1 2,498,607 - +0.6 2,498,627 + -0.9 2,498,633 + +1.7 2,498,633 + -1.8 2,498,634 + -0.1 2,498,641 - -0.4 2,498,641 - +0.7 2,498,642 - +0.1 2,498,683 + +0.4 2,498,691 - -0.5 2,498,691 - -0.1 2,498,725 + -0.1 2,498,725 + -0.3 2,498,770 - CCNA_02359 0.13 +0.4 2,498,784 - CCNA_02359 0.14 -0.9 2,498,784 - CCNA_02359 0.14 +0.4 2,498,784 - CCNA_02359 0.14 -0.3 2,498,819 + CCNA_02359 0.18 +0.5 2,498,855 + CCNA_02359 0.21 -0.7 2,498,897 + CCNA_02359 0.25 -0.9 2,498,910 - CCNA_02359 0.26 -0.7 2,498,970 - CCNA_02359 0.32 +0.0 2,498,993 - CCNA_02359 0.34 +0.2 2,498,993 - CCNA_02359 0.34 +0.1 2,498,993 - CCNA_02359 0.34 -0.6 2,499,041 + CCNA_02359 0.39 -0.2 2,499,047 - CCNA_02359 0.40 -0.0 2,499,086 + CCNA_02359 0.43 -2.9 2,499,087 + CCNA_02359 0.44 -0.1 2,499,087 + CCNA_02359 0.44 +0.7 2,499,089 - CCNA_02359 0.44 +0.0 2,499,095 - CCNA_02359 0.44 +0.0 2,499,145 - CCNA_02359 0.49 +0.4 2,499,145 - CCNA_02359 0.49 +0.0 2,499,162 - CCNA_02359 0.51 +0.4 2,499,181 + CCNA_02359 0.53 +0.1 2,499,203 + CCNA_02359 0.55 -0.3 2,499,208 + CCNA_02359 0.55 +0.4 2,499,208 + CCNA_02359 0.55 +0.9 2,499,208 + CCNA_02359 0.55 +0.6 2,499,216 - CCNA_02359 0.56 +1.4 2,499,256 - CCNA_02359 0.60 -0.9 2,499,365 + CCNA_02359 0.70 -1.4 2,499,365 + CCNA_02359 0.70 +0.7 2,499,383 - CCNA_02359 0.72 -0.4 2,499,427 + CCNA_02359 0.76 +0.2 2,499,446 + CCNA_02359 0.78 -0.5 2,499,446 + CCNA_02359 0.78 -1.8 2,499,452 + CCNA_02359 0.79 -1.3 2,499,454 - CCNA_02359 0.79 +0.6 2,499,476 + CCNA_02359 0.81 -0.1 2,499,484 - CCNA_02359 0.82 +0.4 2,499,484 - CCNA_02359 0.82 -0.2 2,499,484 - CCNA_02359 0.82 +1.1 2,499,512 + CCNA_02359 0.85 -1.1 2,499,512 + CCNA_02359 0.85 -1.2 2,499,527 - CCNA_02359 0.86 +0.0 2,499,527 - CCNA_02359 0.86 +0.1 2,499,591 + -0.1
Or see this region's nucleotide sequence