Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28950 and ABID97_RS28955 are separated by 30 nucleotides ABID97_RS28955 and ABID97_RS28960 overlap by 8 nucleotides ABID97_RS28960 and ABID97_RS28965 overlap by 4 nucleotides ABID97_RS28965 and ABID97_RS28970 are separated by 147 nucleotides
ABID97_RS28950: ABID97_RS28950 - tripartite tricarboxylate transporter permease, at 709,320 to 710,843
_RS28950
ABID97_RS28955: ABID97_RS28955 - MaoC family dehydratase, at 710,874 to 711,317
_RS28955
ABID97_RS28960: ABID97_RS28960 - AMP-binding protein, at 711,310 to 712,962
_RS28960
ABID97_RS28965: ABID97_RS28965 - nitroreductase, at 712,959 to 713,699
_RS28965
ABID97_RS28970: ABID97_RS28970 - AraC family transcriptional regulator, at 713,847 to 714,866
_RS28970
Position (kb) 711
712
713 Strain fitness (log2 ratio) -2
-1
0
1 at 710.448 kb on + strand, within ABID97_RS28950 at 710.448 kb on + strand, within ABID97_RS28950 at 710.476 kb on - strand, within ABID97_RS28950 at 710.523 kb on + strand, within ABID97_RS28950 at 710.523 kb on + strand, within ABID97_RS28950 at 710.523 kb on + strand, within ABID97_RS28950 at 710.524 kb on - strand, within ABID97_RS28950 at 710.524 kb on - strand, within ABID97_RS28950 at 710.583 kb on + strand, within ABID97_RS28950 at 710.583 kb on + strand, within ABID97_RS28950 at 710.584 kb on - strand, within ABID97_RS28950 at 710.584 kb on - strand, within ABID97_RS28950 at 710.584 kb on - strand, within ABID97_RS28950 at 710.584 kb on - strand, within ABID97_RS28950 at 710.584 kb on - strand, within ABID97_RS28950 at 710.842 kb on - strand at 712.283 kb on + strand, within ABID97_RS28960 at 712.338 kb on - strand, within ABID97_RS28960 at 712.394 kb on + strand, within ABID97_RS28960 at 712.395 kb on - strand, within ABID97_RS28960 at 712.395 kb on - strand, within ABID97_RS28960 at 712.534 kb on + strand, within ABID97_RS28960 at 712.946 kb on + strand at 712.946 kb on + strand at 713.212 kb on + strand, within ABID97_RS28965 at 713.413 kb on + strand, within ABID97_RS28965 at 713.413 kb on + strand, within ABID97_RS28965 at 713.414 kb on - strand, within ABID97_RS28965 at 713.414 kb on - strand, within ABID97_RS28965 at 713.414 kb on - strand, within ABID97_RS28965
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 710,448 + ABID97_RS28950 0.74 +0.1 710,448 + ABID97_RS28950 0.74 -2.1 710,476 - ABID97_RS28950 0.76 +0.2 710,523 + ABID97_RS28950 0.79 -0.0 710,523 + ABID97_RS28950 0.79 -0.9 710,523 + ABID97_RS28950 0.79 -0.5 710,524 - ABID97_RS28950 0.79 +0.7 710,524 - ABID97_RS28950 0.79 -0.0 710,583 + ABID97_RS28950 0.83 -0.3 710,583 + ABID97_RS28950 0.83 -0.6 710,584 - ABID97_RS28950 0.83 -0.1 710,584 - ABID97_RS28950 0.83 +0.4 710,584 - ABID97_RS28950 0.83 -0.0 710,584 - ABID97_RS28950 0.83 -0.7 710,584 - ABID97_RS28950 0.83 -0.8 710,842 - -0.2 712,283 + ABID97_RS28960 0.59 -0.7 712,338 - ABID97_RS28960 0.62 -0.2 712,394 + ABID97_RS28960 0.66 -1.1 712,395 - ABID97_RS28960 0.66 -0.8 712,395 - ABID97_RS28960 0.66 -0.9 712,534 + ABID97_RS28960 0.74 +0.1 712,946 + -1.4 712,946 + +0.7 713,212 + ABID97_RS28965 0.34 -0.0 713,413 + ABID97_RS28965 0.61 +0.4 713,413 + ABID97_RS28965 0.61 -0.7 713,414 - ABID97_RS28965 0.61 +1.3 713,414 - ABID97_RS28965 0.61 -0.0 713,414 - ABID97_RS28965 0.61 +0.5
Or see this region's nucleotide sequence