Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21605

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21590 and ABID97_RS21595 are separated by 27 nucleotidesABID97_RS21595 and ABID97_RS21600 are separated by 43 nucleotidesABID97_RS21600 and ABID97_RS21605 overlap by 4 nucleotidesABID97_RS21605 and ABID97_RS21610 are separated by 179 nucleotidesABID97_RS21610 and ABID97_RS21615 are separated by 69 nucleotidesABID97_RS21615 and ABID97_RS21620 are separated by 51 nucleotidesABID97_RS21620 and ABID97_RS21625 are separated by 36 nucleotides ABID97_RS21590: ABID97_RS21590 - PLP-dependent aminotransferase family protein, at 4,470,450 to 4,471,862 _RS21590 ABID97_RS21595: ABID97_RS21595 - GFA family protein, at 4,471,890 to 4,472,318 _RS21595 ABID97_RS21600: ABID97_RS21600 - SRPBCC domain-containing protein, at 4,472,362 to 4,472,826 _RS21600 ABID97_RS21605: ABID97_RS21605 - metalloregulator ArsR/SmtB family transcription factor, at 4,472,823 to 4,473,155 _RS21605 ABID97_RS21610: ABID97_RS21610 - tRNA-Asp, at 4,473,335 to 4,473,411 _RS21610 ABID97_RS21615: ABID97_RS21615 - tRNA-Glu, at 4,473,481 to 4,473,556 _RS21615 ABID97_RS21620: ABID97_RS21620 - tRNA-Ala, at 4,473,608 to 4,473,683 _RS21620 ABID97_RS21625: ABID97_RS21625 - glutamate--tRNA ligase, at 4,473,720 to 4,475,108 _RS21625 Position (kb) 4472 4473 4474Strain fitness (log2 ratio) -2 -1 0 1at 4471.975 kb on + strand, within ABID97_RS21595at 4471.975 kb on + strand, within ABID97_RS21595at 4471.975 kb on + strand, within ABID97_RS21595at 4471.975 kb on + strand, within ABID97_RS21595at 4471.976 kb on - strand, within ABID97_RS21595at 4471.976 kb on - strand, within ABID97_RS21595at 4471.976 kb on - strand, within ABID97_RS21595at 4471.976 kb on - strand, within ABID97_RS21595at 4472.065 kb on + strand, within ABID97_RS21595at 4472.188 kb on + strand, within ABID97_RS21595at 4472.188 kb on + strand, within ABID97_RS21595at 4472.189 kb on - strand, within ABID97_RS21595at 4472.939 kb on - strand, within ABID97_RS21605at 4473.221 kb on + strandat 4473.221 kb on + strandat 4473.221 kb on + strandat 4473.590 kb on - strandat 4473.590 kb on - strandat 4473.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,471,975 + ABID97_RS21595 0.20 -1.1
4,471,975 + ABID97_RS21595 0.20 -1.0
4,471,975 + ABID97_RS21595 0.20 +0.5
4,471,975 + ABID97_RS21595 0.20 -0.2
4,471,976 - ABID97_RS21595 0.20 -0.5
4,471,976 - ABID97_RS21595 0.20 -0.6
4,471,976 - ABID97_RS21595 0.20 -2.0
4,471,976 - ABID97_RS21595 0.20 -0.9
4,472,065 + ABID97_RS21595 0.41 -0.9
4,472,188 + ABID97_RS21595 0.69 +1.1
4,472,188 + ABID97_RS21595 0.69 -1.4
4,472,189 - ABID97_RS21595 0.70 -0.3
4,472,939 - ABID97_RS21605 0.35 -1.1
4,473,221 + -0.0
4,473,221 + -0.3
4,473,221 + -0.5
4,473,590 - -0.4
4,473,590 - +0.3
4,473,590 - +0.8

Or see this region's nucleotide sequence