Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15750

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15745 and ABID97_RS15750 are separated by 40 nucleotidesABID97_RS15750 and ABID97_RS15755 are separated by 200 nucleotides ABID97_RS15745: ABID97_RS15745 - M20 family peptidase, at 3,261,596 to 3,263,071 _RS15745 ABID97_RS15750: ABID97_RS15750 - acetyl-CoA C-acyltransferase, at 3,263,112 to 3,264,287 _RS15750 ABID97_RS15755: ABID97_RS15755 - acyl-CoA dehydrogenase, at 3,264,488 to 3,266,399 _RS15755 Position (kb) 3263 3264 3265Strain fitness (log2 ratio) -1 0 1at 3262.322 kb on + strand, within ABID97_RS15745at 3262.926 kb on - strandat 3263.006 kb on + strandat 3263.027 kb on + strandat 3263.445 kb on + strand, within ABID97_RS15750at 3263.446 kb on - strand, within ABID97_RS15750at 3263.446 kb on - strand, within ABID97_RS15750at 3263.587 kb on - strand, within ABID97_RS15750at 3263.895 kb on + strand, within ABID97_RS15750at 3264.081 kb on + strand, within ABID97_RS15750at 3264.082 kb on - strand, within ABID97_RS15750at 3264.272 kb on - strandat 3264.764 kb on + strand, within ABID97_RS15755at 3264.764 kb on + strand, within ABID97_RS15755at 3264.791 kb on + strand, within ABID97_RS15755at 3264.792 kb on - strand, within ABID97_RS15755at 3264.793 kb on + strand, within ABID97_RS15755at 3264.794 kb on - strand, within ABID97_RS15755at 3264.794 kb on - strand, within ABID97_RS15755

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,262,322 + ABID97_RS15745 0.49 -0.5
3,262,926 - +0.3
3,263,006 + +0.7
3,263,027 + -1.0
3,263,445 + ABID97_RS15750 0.28 +0.2
3,263,446 - ABID97_RS15750 0.28 -0.3
3,263,446 - ABID97_RS15750 0.28 +0.3
3,263,587 - ABID97_RS15750 0.40 +1.2
3,263,895 + ABID97_RS15750 0.67 +0.0
3,264,081 + ABID97_RS15750 0.82 -0.9
3,264,082 - ABID97_RS15750 0.82 -1.1
3,264,272 - -1.0
3,264,764 + ABID97_RS15755 0.14 -0.2
3,264,764 + ABID97_RS15755 0.14 -0.5
3,264,791 + ABID97_RS15755 0.16 +0.1
3,264,792 - ABID97_RS15755 0.16 +0.2
3,264,793 + ABID97_RS15755 0.16 +0.4
3,264,794 - ABID97_RS15755 0.16 +0.5
3,264,794 - ABID97_RS15755 0.16 -0.2

Or see this region's nucleotide sequence