Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11910 and ABID97_RS11915 are separated by 19 nucleotides ABID97_RS11915 and ABID97_RS11920 overlap by 14 nucleotides ABID97_RS11920 and ABID97_RS11925 are separated by 7 nucleotides ABID97_RS11925 and ABID97_RS11930 are separated by 160 nucleotides
ABID97_RS11910: ABID97_RS11910 - glycosyltransferase, at 2,460,307 to 2,461,401
_RS11910
ABID97_RS11915: ABID97_RS11915 - TIGR04290 family methyltransferase, at 2,461,421 to 2,462,239
_RS11915
ABID97_RS11920: ABID97_RS11920 - DUF1003 domain-containing protein, at 2,462,226 to 2,462,774
_RS11920
ABID97_RS11925: ABID97_RS11925 - DUF4142 domain-containing protein, at 2,462,782 to 2,463,363
_RS11925
ABID97_RS11930: ABID97_RS11930 - hypothetical protein, at 2,463,524 to 2,463,808
_RS11930
Position (kb) 2462
2463 Strain fitness (log2 ratio) -1
0
1 at 2462.144 kb on + strand, within ABID97_RS11915 at 2462.189 kb on + strand at 2462.336 kb on - strand, within ABID97_RS11920 at 2462.403 kb on + strand, within ABID97_RS11920 at 2462.951 kb on + strand, within ABID97_RS11925
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,462,144 + ABID97_RS11915 0.88 +0.1 2,462,189 + -0.4 2,462,336 - ABID97_RS11920 0.20 -1.2 2,462,403 + ABID97_RS11920 0.32 -0.1 2,462,951 + ABID97_RS11925 0.29 +0.8
Or see this region's nucleotide sequence