Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5788 and Pf1N1B4_5789 are separated by 188 nucleotides Pf1N1B4_5789 and Pf1N1B4_5790 are separated by 290 nucleotides
Pf1N1B4_5788 - CBS domain protein, at 226,772 to 226,915
_5788
Pf1N1B4_5789 - hypothetical protein, at 227,104 to 227,238
_5789
Pf1N1B4_5790 - hypothetical protein, at 227,529 to 227,660
_5790
Position (kb) 227
228 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 226.607 kb on - strand at 226.656 kb on + strand at 226.656 kb on + strand at 226.656 kb on + strand at 226.656 kb on + strand at 226.656 kb on + strand at 226.656 kb on + strand at 226.656 kb on + strand at 226.656 kb on + strand at 226.656 kb on + strand at 226.656 kb on + strand at 226.656 kb on + strand at 226.657 kb on - strand at 226.657 kb on - strand at 226.657 kb on - strand at 226.657 kb on - strand at 226.660 kb on + strand at 226.660 kb on + strand at 226.660 kb on + strand at 226.660 kb on + strand at 226.660 kb on + strand at 226.660 kb on + strand at 226.660 kb on + strand at 226.660 kb on + strand at 226.660 kb on + strand at 226.660 kb on + strand at 226.660 kb on + strand at 226.710 kb on + strand at 226.710 kb on + strand at 226.710 kb on + strand at 226.711 kb on - strand at 226.752 kb on + strand at 226.752 kb on + strand at 226.752 kb on + strand at 226.752 kb on + strand at 226.753 kb on - strand at 226.753 kb on - strand at 226.937 kb on + strand at 226.954 kb on + strand at 227.219 kb on + strand at 227.220 kb on - strand, within Pf1N1B4_5789 at 227.268 kb on - strand at 227.331 kb on - strand at 227.331 kb on - strand at 227.331 kb on - strand at 227.335 kb on - strand at 227.438 kb on - strand at 227.438 kb on - strand at 227.476 kb on + strand at 227.477 kb on - strand at 227.517 kb on + strand at 227.518 kb on - strand at 227.531 kb on - strand at 227.602 kb on - strand, within Pf1N1B4_5790 at 227.620 kb on + strand, within Pf1N1B4_5790 at 227.620 kb on + strand, within Pf1N1B4_5790 at 227.621 kb on - strand, within Pf1N1B4_5790 at 227.621 kb on - strand, within Pf1N1B4_5790 at 227.621 kb on - strand, within Pf1N1B4_5790 at 227.621 kb on - strand, within Pf1N1B4_5790 at 227.706 kb on + strand at 227.743 kb on + strand at 227.743 kb on + strand at 227.743 kb on + strand at 227.858 kb on + strand at 227.908 kb on + strand at 227.908 kb on + strand at 228.090 kb on + strand at 228.090 kb on + strand at 228.090 kb on + strand at 228.090 kb on + strand at 228.090 kb on + strand at 228.090 kb on + strand at 228.090 kb on + strand at 228.090 kb on + strand at 228.090 kb on + strand at 228.091 kb on - strand at 228.091 kb on - strand at 228.091 kb on - strand at 228.127 kb on + strand at 228.127 kb on + strand at 228.148 kb on + strand at 228.149 kb on - strand at 228.170 kb on + strand at 228.171 kb on - strand at 228.178 kb on + strand at 228.185 kb on - strand at 228.272 kb on + strand at 228.273 kb on - strand at 228.334 kb on + strand at 228.334 kb on + strand at 228.334 kb on + strand at 228.334 kb on + strand at 228.334 kb on + strand at 228.334 kb on + strand at 228.335 kb on - strand at 228.335 kb on - strand at 228.335 kb on - strand at 228.335 kb on - strand at 228.335 kb on - strand at 228.335 kb on - strand at 228.346 kb on - strand at 228.346 kb on - strand at 228.346 kb on - strand at 228.367 kb on + strand at 228.367 kb on + strand at 228.367 kb on + strand at 228.422 kb on + strand at 228.423 kb on - strand at 228.423 kb on - strand at 228.605 kb on + strand at 228.606 kb on - strand at 228.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 226,607 - -1.2 226,656 + +0.2 226,656 + -0.2 226,656 + -0.8 226,656 + -0.5 226,656 + -0.2 226,656 + -1.2 226,656 + -1.5 226,656 + -1.1 226,656 + -2.0 226,656 + -0.4 226,656 + +0.2 226,657 - -0.2 226,657 - +0.1 226,657 - +1.4 226,657 - -1.5 226,660 + -0.6 226,660 + +1.8 226,660 + -0.2 226,660 + +0.1 226,660 + +2.4 226,660 + +0.6 226,660 + +0.6 226,660 + -0.0 226,660 + -1.0 226,660 + -0.8 226,660 + -0.5 226,710 + +0.8 226,710 + +1.4 226,710 + -0.6 226,711 - -0.8 226,752 + +0.5 226,752 + +1.3 226,752 + +0.2 226,752 + -1.0 226,753 - -1.9 226,753 - +1.8 226,937 + -0.8 226,954 + +1.1 227,219 + -0.5 227,220 - Pf1N1B4_5789 0.86 +2.4 227,268 - -0.8 227,331 - -0.8 227,331 - -1.5 227,331 - -1.4 227,335 - -0.0 227,438 - -0.4 227,438 - -0.1 227,476 + -0.0 227,477 - +0.3 227,517 + -0.5 227,518 - +1.8 227,531 - -2.2 227,602 - Pf1N1B4_5790 0.55 +0.2 227,620 + Pf1N1B4_5790 0.69 +2.1 227,620 + Pf1N1B4_5790 0.69 +0.6 227,621 - Pf1N1B4_5790 0.70 +0.5 227,621 - Pf1N1B4_5790 0.70 +1.1 227,621 - Pf1N1B4_5790 0.70 -1.1 227,621 - Pf1N1B4_5790 0.70 -0.4 227,706 + -0.6 227,743 + -1.3 227,743 + +0.2 227,743 + -0.8 227,858 + -0.2 227,908 + -0.8 227,908 + +0.1 228,090 + -0.8 228,090 + +1.1 228,090 + -0.2 228,090 + -0.2 228,090 + -0.8 228,090 + -0.2 228,090 + -0.0 228,090 + +0.8 228,090 + +2.0 228,091 - -1.0 228,091 - -0.5 228,091 - +1.0 228,127 + -1.5 228,127 + -0.2 228,148 + -1.0 228,149 - -0.8 228,170 + +1.4 228,171 - -1.1 228,178 + -0.1 228,185 - +0.3 228,272 + +0.8 228,273 - -1.4 228,334 + -0.4 228,334 + +0.6 228,334 + +0.5 228,334 + -0.0 228,334 + +1.1 228,334 + +0.4 228,335 - +0.3 228,335 - -0.0 228,335 - -0.3 228,335 - +0.6 228,335 - +0.4 228,335 - -2.2 228,346 - -3.1 228,346 - +0.1 228,346 - -0.8 228,367 + -0.5 228,367 + -0.8 228,367 + +0.2 228,422 + +0.8 228,423 - +0.1 228,423 - -0.0 228,605 + -0.1 228,606 - -0.4 228,606 - -0.7
Or see this region's nucleotide sequence