Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08700

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS08690 and ABIE51_RS08695 are separated by 26 nucleotidesABIE51_RS08695 and ABIE51_RS08700 are separated by 35 nucleotidesABIE51_RS08700 and ABIE51_RS08705 are separated by 0 nucleotidesABIE51_RS08705 and ABIE51_RS08710 are separated by 28 nucleotidesABIE51_RS08710 and ABIE51_RS08715 overlap by 4 nucleotides ABIE51_RS08690: ABIE51_RS08690 - cytochrome c-type biogenesis protein, at 1,844,412 to 1,844,843 _RS08690 ABIE51_RS08695: ABIE51_RS08695 - DsbE family thiol:disulfide interchange protein, at 1,844,870 to 1,845,424 _RS08695 ABIE51_RS08700: ABIE51_RS08700 - heme lyase CcmF/NrfE family subunit, at 1,845,460 to 1,847,433 _RS08700 ABIE51_RS08705: ABIE51_RS08705 - cytochrome c maturation protein CcmE, at 1,847,434 to 1,847,907 _RS08705 ABIE51_RS08710: ABIE51_RS08710 - heme exporter protein CcmD, at 1,847,936 to 1,848,103 _RS08710 ABIE51_RS08715: ABIE51_RS08715 - heme ABC transporter permease CcmC, at 1,848,100 to 1,848,852 _RS08715 Position (kb) 1845 1846 1847 1848Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1844.578 kb on + strand, within ABIE51_RS08690at 1844.578 kb on + strand, within ABIE51_RS08690at 1844.964 kb on + strand, within ABIE51_RS08695at 1844.964 kb on + strand, within ABIE51_RS08695at 1844.964 kb on + strand, within ABIE51_RS08695at 1844.965 kb on - strand, within ABIE51_RS08695at 1845.018 kb on + strand, within ABIE51_RS08695at 1845.019 kb on - strand, within ABIE51_RS08695at 1845.019 kb on - strand, within ABIE51_RS08695at 1845.051 kb on + strand, within ABIE51_RS08695at 1845.051 kb on + strand, within ABIE51_RS08695at 1845.073 kb on - strand, within ABIE51_RS08695at 1845.073 kb on - strand, within ABIE51_RS08695at 1845.232 kb on - strand, within ABIE51_RS08695at 1845.232 kb on - strand, within ABIE51_RS08695at 1845.232 kb on - strand, within ABIE51_RS08695at 1845.232 kb on - strand, within ABIE51_RS08695at 1845.282 kb on - strand, within ABIE51_RS08695at 1845.282 kb on - strand, within ABIE51_RS08695at 1845.282 kb on - strand, within ABIE51_RS08695at 1845.454 kb on + strandat 1845.454 kb on + strandat 1845.610 kb on + strandat 1845.665 kb on + strand, within ABIE51_RS08700at 1845.665 kb on + strand, within ABIE51_RS08700at 1845.665 kb on + strand, within ABIE51_RS08700at 1845.665 kb on + strand, within ABIE51_RS08700at 1845.666 kb on - strand, within ABIE51_RS08700at 1845.666 kb on - strand, within ABIE51_RS08700at 1845.666 kb on - strand, within ABIE51_RS08700at 1845.806 kb on + strand, within ABIE51_RS08700at 1845.806 kb on + strand, within ABIE51_RS08700at 1845.807 kb on - strand, within ABIE51_RS08700at 1845.807 kb on - strand, within ABIE51_RS08700at 1846.112 kb on + strand, within ABIE51_RS08700at 1846.113 kb on - strand, within ABIE51_RS08700at 1846.200 kb on + strand, within ABIE51_RS08700at 1846.201 kb on - strand, within ABIE51_RS08700at 1846.201 kb on - strand, within ABIE51_RS08700at 1846.448 kb on + strand, within ABIE51_RS08700at 1846.448 kb on + strand, within ABIE51_RS08700at 1846.742 kb on + strand, within ABIE51_RS08700at 1846.742 kb on + strand, within ABIE51_RS08700at 1846.742 kb on + strand, within ABIE51_RS08700at 1846.742 kb on + strand, within ABIE51_RS08700at 1846.742 kb on + strand, within ABIE51_RS08700at 1846.743 kb on - strand, within ABIE51_RS08700at 1846.743 kb on - strand, within ABIE51_RS08700at 1846.745 kb on + strand, within ABIE51_RS08700at 1846.745 kb on + strand, within ABIE51_RS08700at 1846.746 kb on - strand, within ABIE51_RS08700at 1846.746 kb on - strand, within ABIE51_RS08700at 1846.895 kb on + strand, within ABIE51_RS08700at 1846.895 kb on + strand, within ABIE51_RS08700at 1846.895 kb on + strand, within ABIE51_RS08700at 1846.895 kb on + strand, within ABIE51_RS08700at 1846.904 kb on + strand, within ABIE51_RS08700at 1846.904 kb on + strand, within ABIE51_RS08700at 1846.904 kb on + strand, within ABIE51_RS08700at 1846.905 kb on - strand, within ABIE51_RS08700at 1846.905 kb on - strand, within ABIE51_RS08700at 1847.180 kb on + strand, within ABIE51_RS08700at 1847.180 kb on + strand, within ABIE51_RS08700at 1847.180 kb on + strand, within ABIE51_RS08700at 1847.181 kb on - strand, within ABIE51_RS08700at 1847.181 kb on - strand, within ABIE51_RS08700at 1847.186 kb on + strand, within ABIE51_RS08700at 1847.186 kb on + strand, within ABIE51_RS08700at 1847.186 kb on + strand, within ABIE51_RS08700at 1847.186 kb on + strand, within ABIE51_RS08700at 1847.187 kb on - strand, within ABIE51_RS08700at 1847.187 kb on - strand, within ABIE51_RS08700at 1847.187 kb on - strand, within ABIE51_RS08700at 1847.187 kb on - strand, within ABIE51_RS08700at 1847.187 kb on - strand, within ABIE51_RS08700at 1847.187 kb on - strand, within ABIE51_RS08700at 1847.225 kb on + strand, within ABIE51_RS08700at 1847.225 kb on + strand, within ABIE51_RS08700at 1847.225 kb on + strand, within ABIE51_RS08700at 1847.226 kb on - strand, within ABIE51_RS08700at 1847.226 kb on - strand, within ABIE51_RS08700at 1847.435 kb on + strandat 1847.435 kb on + strandat 1847.435 kb on + strandat 1847.435 kb on + strandat 1847.435 kb on + strandat 1847.436 kb on - strandat 1847.436 kb on - strandat 1847.436 kb on - strandat 1847.436 kb on - strandat 1847.528 kb on + strand, within ABIE51_RS08705at 1847.528 kb on + strand, within ABIE51_RS08705at 1847.528 kb on + strand, within ABIE51_RS08705at 1847.528 kb on + strand, within ABIE51_RS08705at 1847.528 kb on + strand, within ABIE51_RS08705at 1847.528 kb on + strand, within ABIE51_RS08705at 1847.528 kb on + strand, within ABIE51_RS08705at 1847.528 kb on + strand, within ABIE51_RS08705at 1847.528 kb on + strand, within ABIE51_RS08705at 1847.528 kb on + strand, within ABIE51_RS08705at 1847.528 kb on + strand, within ABIE51_RS08705at 1847.528 kb on + strand, within ABIE51_RS08705at 1847.528 kb on + strand, within ABIE51_RS08705at 1847.529 kb on - strand, within ABIE51_RS08705at 1847.529 kb on - strand, within ABIE51_RS08705at 1847.529 kb on - strand, within ABIE51_RS08705at 1847.529 kb on - strand, within ABIE51_RS08705at 1847.529 kb on - strand, within ABIE51_RS08705at 1847.529 kb on - strand, within ABIE51_RS08705at 1847.642 kb on + strand, within ABIE51_RS08705at 1847.642 kb on + strand, within ABIE51_RS08705at 1847.643 kb on - strand, within ABIE51_RS08705at 1847.643 kb on - strand, within ABIE51_RS08705at 1847.795 kb on + strand, within ABIE51_RS08705at 1847.796 kb on - strand, within ABIE51_RS08705at 1847.801 kb on + strand, within ABIE51_RS08705at 1847.801 kb on + strand, within ABIE51_RS08705at 1847.802 kb on - strand, within ABIE51_RS08705at 1847.932 kb on - strandat 1848.087 kb on + strandat 1848.087 kb on + strandat 1848.087 kb on + strandat 1848.088 kb on - strandat 1848.097 kb on - strandat 1848.239 kb on + strand, within ABIE51_RS08715at 1848.239 kb on + strand, within ABIE51_RS08715at 1848.239 kb on + strand, within ABIE51_RS08715at 1848.240 kb on + strand, within ABIE51_RS08715at 1848.407 kb on + strand, within ABIE51_RS08715at 1848.408 kb on - strand, within ABIE51_RS08715at 1848.428 kb on + strand, within ABIE51_RS08715at 1848.428 kb on + strand, within ABIE51_RS08715

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,844,578 + ABIE51_RS08690 0.38 -0.8
1,844,578 + ABIE51_RS08690 0.38 -1.0
1,844,964 + ABIE51_RS08695 0.17 +1.3
1,844,964 + ABIE51_RS08695 0.17 +0.2
1,844,964 + ABIE51_RS08695 0.17 -0.2
1,844,965 - ABIE51_RS08695 0.17 -1.8
1,845,018 + ABIE51_RS08695 0.27 +1.8
1,845,019 - ABIE51_RS08695 0.27 +1.2
1,845,019 - ABIE51_RS08695 0.27 -0.4
1,845,051 + ABIE51_RS08695 0.33 -1.7
1,845,051 + ABIE51_RS08695 0.33 -0.2
1,845,073 - ABIE51_RS08695 0.37 -1.8
1,845,073 - ABIE51_RS08695 0.37 -0.5
1,845,232 - ABIE51_RS08695 0.65 -0.5
1,845,232 - ABIE51_RS08695 0.65 +0.5
1,845,232 - ABIE51_RS08695 0.65 -2.6
1,845,232 - ABIE51_RS08695 0.65 +1.2
1,845,282 - ABIE51_RS08695 0.74 -3.3
1,845,282 - ABIE51_RS08695 0.74 -0.4
1,845,282 - ABIE51_RS08695 0.74 +0.7
1,845,454 + +0.7
1,845,454 + -0.4
1,845,610 + -1.6
1,845,665 + ABIE51_RS08700 0.10 -0.1
1,845,665 + ABIE51_RS08700 0.10 -0.6
1,845,665 + ABIE51_RS08700 0.10 -0.8
1,845,665 + ABIE51_RS08700 0.10 -1.1
1,845,666 - ABIE51_RS08700 0.10 +0.2
1,845,666 - ABIE51_RS08700 0.10 -2.9
1,845,666 - ABIE51_RS08700 0.10 -2.4
1,845,806 + ABIE51_RS08700 0.18 -0.6
1,845,806 + ABIE51_RS08700 0.18 +1.0
1,845,807 - ABIE51_RS08700 0.18 +0.0
1,845,807 - ABIE51_RS08700 0.18 -0.4
1,846,112 + ABIE51_RS08700 0.33 +0.9
1,846,113 - ABIE51_RS08700 0.33 -1.6
1,846,200 + ABIE51_RS08700 0.37 -0.3
1,846,201 - ABIE51_RS08700 0.38 -1.1
1,846,201 - ABIE51_RS08700 0.38 +2.5
1,846,448 + ABIE51_RS08700 0.50 -0.4
1,846,448 + ABIE51_RS08700 0.50 -1.5
1,846,742 + ABIE51_RS08700 0.65 +2.5
1,846,742 + ABIE51_RS08700 0.65 +1.2
1,846,742 + ABIE51_RS08700 0.65 -2.2
1,846,742 + ABIE51_RS08700 0.65 +0.8
1,846,742 + ABIE51_RS08700 0.65 -1.4
1,846,743 - ABIE51_RS08700 0.65 -1.1
1,846,743 - ABIE51_RS08700 0.65 -3.1
1,846,745 + ABIE51_RS08700 0.65 -0.5
1,846,745 + ABIE51_RS08700 0.65 -0.6
1,846,746 - ABIE51_RS08700 0.65 -2.4
1,846,746 - ABIE51_RS08700 0.65 -1.4
1,846,895 + ABIE51_RS08700 0.73 -2.5
1,846,895 + ABIE51_RS08700 0.73 -1.3
1,846,895 + ABIE51_RS08700 0.73 -0.4
1,846,895 + ABIE51_RS08700 0.73 -2.6
1,846,904 + ABIE51_RS08700 0.73 -0.4
1,846,904 + ABIE51_RS08700 0.73 -0.8
1,846,904 + ABIE51_RS08700 0.73 -0.3
1,846,905 - ABIE51_RS08700 0.73 +0.9
1,846,905 - ABIE51_RS08700 0.73 -3.1
1,847,180 + ABIE51_RS08700 0.87 -3.0
1,847,180 + ABIE51_RS08700 0.87 -3.1
1,847,180 + ABIE51_RS08700 0.87 +0.7
1,847,181 - ABIE51_RS08700 0.87 +0.4
1,847,181 - ABIE51_RS08700 0.87 -2.0
1,847,186 + ABIE51_RS08700 0.87 -2.1
1,847,186 + ABIE51_RS08700 0.87 -1.8
1,847,186 + ABIE51_RS08700 0.87 -1.4
1,847,186 + ABIE51_RS08700 0.87 +1.7
1,847,187 - ABIE51_RS08700 0.87 +2.8
1,847,187 - ABIE51_RS08700 0.87 +0.3
1,847,187 - ABIE51_RS08700 0.87 +1.2
1,847,187 - ABIE51_RS08700 0.87 -0.6
1,847,187 - ABIE51_RS08700 0.87 -2.0
1,847,187 - ABIE51_RS08700 0.87 -1.0
1,847,225 + ABIE51_RS08700 0.89 -1.1
1,847,225 + ABIE51_RS08700 0.89 -0.8
1,847,225 + ABIE51_RS08700 0.89 -2.4
1,847,226 - ABIE51_RS08700 0.89 -0.4
1,847,226 - ABIE51_RS08700 0.89 -1.1
1,847,435 + +0.6
1,847,435 + +1.5
1,847,435 + -0.2
1,847,435 + +2.2
1,847,435 + -1.5
1,847,436 - -1.3
1,847,436 - -0.8
1,847,436 - -1.4
1,847,436 - +0.6
1,847,528 + ABIE51_RS08705 0.20 -3.1
1,847,528 + ABIE51_RS08705 0.20 -3.6
1,847,528 + ABIE51_RS08705 0.20 -2.5
1,847,528 + ABIE51_RS08705 0.20 -1.0
1,847,528 + ABIE51_RS08705 0.20 -0.5
1,847,528 + ABIE51_RS08705 0.20 -1.8
1,847,528 + ABIE51_RS08705 0.20 +0.1
1,847,528 + ABIE51_RS08705 0.20 -1.4
1,847,528 + ABIE51_RS08705 0.20 +0.7
1,847,528 + ABIE51_RS08705 0.20 +0.2
1,847,528 + ABIE51_RS08705 0.20 -0.7
1,847,528 + ABIE51_RS08705 0.20 +1.9
1,847,528 + ABIE51_RS08705 0.20 -1.6
1,847,529 - ABIE51_RS08705 0.20 -2.6
1,847,529 - ABIE51_RS08705 0.20 +0.2
1,847,529 - ABIE51_RS08705 0.20 +1.2
1,847,529 - ABIE51_RS08705 0.20 +1.8
1,847,529 - ABIE51_RS08705 0.20 -1.0
1,847,529 - ABIE51_RS08705 0.20 -1.5
1,847,642 + ABIE51_RS08705 0.44 -1.8
1,847,642 + ABIE51_RS08705 0.44 -1.4
1,847,643 - ABIE51_RS08705 0.44 +0.2
1,847,643 - ABIE51_RS08705 0.44 -1.1
1,847,795 + ABIE51_RS08705 0.76 +1.5
1,847,796 - ABIE51_RS08705 0.76 +1.1
1,847,801 + ABIE51_RS08705 0.77 +1.4
1,847,801 + ABIE51_RS08705 0.77 -1.4
1,847,802 - ABIE51_RS08705 0.78 -1.5
1,847,932 - +0.7
1,848,087 + -2.1
1,848,087 + -1.8
1,848,087 + +0.1
1,848,088 - +0.9
1,848,097 - -0.3
1,848,239 + ABIE51_RS08715 0.18 +0.2
1,848,239 + ABIE51_RS08715 0.18 +0.4
1,848,239 + ABIE51_RS08715 0.18 +0.3
1,848,240 + ABIE51_RS08715 0.19 -2.3
1,848,407 + ABIE51_RS08715 0.41 -1.8
1,848,408 - ABIE51_RS08715 0.41 +1.5
1,848,428 + ABIE51_RS08715 0.44 +0.7
1,848,428 + ABIE51_RS08715 0.44 -0.9

Or see this region's nucleotide sequence