Experiment: KB with Carbenicillin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4453 and Psyr_4454 are separated by 25 nucleotides Psyr_4454 and Psyr_4455 are separated by 41 nucleotides Psyr_4455 and Psyr_4456 overlap by 4 nucleotides Psyr_4456 and Psyr_4457 are separated by 85 nucleotides
Psyr_4453: Psyr_4453 - Urease accessory protein UreG, at 5,318,439 to 5,319,056
_4453
Psyr_4454: Psyr_4454 - HupE/UreJ protein, at 5,319,082 to 5,319,654
_4454
Psyr_4455: Psyr_4455 - conserved hypothetical protein, at 5,319,696 to 5,320,115
_4455
Psyr_4456: Psyr_4456 - GTP cyclohydrolase II, at 5,320,112 to 5,320,777
_4456
Psyr_4457: Psyr_4457 - thiamine-phosphate kinase, at 5,320,863 to 5,321,828
_4457
Position (kb) 5319
5320
5321 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.807 kb on - strand, within Psyr_4453 at 5318.807 kb on - strand, within Psyr_4453 at 5318.807 kb on - strand, within Psyr_4453 at 5319.088 kb on + strand at 5319.404 kb on + strand, within Psyr_4454 at 5319.404 kb on + strand, within Psyr_4454 at 5319.405 kb on - strand, within Psyr_4454 at 5319.405 kb on - strand, within Psyr_4454 at 5319.722 kb on - strand at 5319.727 kb on + strand at 5319.727 kb on + strand at 5319.728 kb on - strand at 5319.728 kb on - strand at 5319.926 kb on - strand, within Psyr_4455 at 5319.963 kb on + strand, within Psyr_4455 at 5319.963 kb on + strand, within Psyr_4455 at 5319.963 kb on + strand, within Psyr_4455 at 5320.026 kb on + strand, within Psyr_4455 at 5320.748 kb on - strand at 5320.781 kb on - strand at 5320.781 kb on - strand at 5320.781 kb on - strand at 5320.781 kb on - strand at 5320.826 kb on - strand at 5320.826 kb on - strand at 5320.826 kb on - strand at 5320.826 kb on - strand at 5320.826 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml remove 5,318,802 + Psyr_4453 0.59 -0.0 5,318,802 + Psyr_4453 0.59 +1.0 5,318,802 + Psyr_4453 0.59 +0.4 5,318,802 + Psyr_4453 0.59 +0.3 5,318,802 + Psyr_4453 0.59 -0.1 5,318,802 + Psyr_4453 0.59 -0.9 5,318,802 + Psyr_4453 0.59 +0.5 5,318,802 + Psyr_4453 0.59 -0.2 5,318,802 + Psyr_4453 0.59 -0.3 5,318,802 + Psyr_4453 0.59 -0.0 5,318,802 + Psyr_4453 0.59 +0.1 5,318,802 + Psyr_4453 0.59 -0.3 5,318,803 - Psyr_4453 0.59 +0.3 5,318,803 - Psyr_4453 0.59 +1.1 5,318,803 - Psyr_4453 0.59 -0.6 5,318,803 - Psyr_4453 0.59 -0.3 5,318,803 - Psyr_4453 0.59 +0.7 5,318,803 - Psyr_4453 0.59 +0.1 5,318,803 - Psyr_4453 0.59 +0.4 5,318,807 - Psyr_4453 0.60 +1.0 5,318,807 - Psyr_4453 0.60 -0.2 5,318,807 - Psyr_4453 0.60 +0.8 5,319,088 + +0.6 5,319,404 + Psyr_4454 0.56 +0.2 5,319,404 + Psyr_4454 0.56 -0.9 5,319,405 - Psyr_4454 0.56 +0.8 5,319,405 - Psyr_4454 0.56 +0.2 5,319,722 - -1.6 5,319,727 + -0.5 5,319,727 + -1.8 5,319,728 - +0.5 5,319,728 - -0.4 5,319,926 - Psyr_4455 0.55 +0.6 5,319,963 + Psyr_4455 0.64 -0.4 5,319,963 + Psyr_4455 0.64 -0.8 5,319,963 + Psyr_4455 0.64 -1.9 5,320,026 + Psyr_4455 0.79 -0.7 5,320,748 - +0.2 5,320,781 - -0.6 5,320,781 - -0.4 5,320,781 - -1.2 5,320,781 - -0.3 5,320,826 - -0.0 5,320,826 - -0.0 5,320,826 - -0.0 5,320,826 - -0.8 5,320,826 - -0.2 5,320,847 - +1.3 5,320,847 - -1.1 5,320,847 - +0.5 5,320,847 - -0.2 5,320,847 - +2.2 5,320,847 - +0.8 5,320,847 - -0.0 5,320,847 - +0.2 5,320,847 - +1.0
Or see this region's nucleotide sequence