Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00170 and LRK54_RS00175 are separated by 443 nucleotides LRK54_RS00175 and LRK54_RS00180 are separated by 385 nucleotides
LRK54_RS00170: LRK54_RS00170 - IS701 family transposase, at 38,759 to 40,117
_RS00170
LRK54_RS00175: LRK54_RS00175 - transposase, at 40,561 to 40,905
_RS00175
LRK54_RS00180: LRK54_RS00180 - DNA repair exonuclease, at 41,291 to 42,415
_RS00180
Position (kb) 40
41 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.104 kb on + strand at 40.115 kb on + strand at 40.115 kb on + strand at 40.115 kb on + strand at 40.115 kb on + strand at 40.121 kb on + strand at 40.121 kb on + strand at 40.121 kb on + strand at 40.125 kb on + strand at 40.125 kb on + strand at 40.125 kb on + strand at 40.126 kb on - strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.303 kb on + strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.304 kb on - strand at 40.330 kb on + strand at 40.330 kb on + strand at 40.330 kb on + strand at 40.330 kb on + strand at 40.483 kb on + strand at 40.483 kb on + strand at 40.483 kb on + strand at 40.484 kb on - strand at 40.484 kb on - strand at 40.484 kb on - strand at 40.484 kb on - strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.724 kb on + strand, within LRK54_RS00175 at 40.725 kb on - strand, within LRK54_RS00175 at 40.725 kb on - strand, within LRK54_RS00175 at 40.725 kb on - strand, within LRK54_RS00175 at 40.725 kb on - strand, within LRK54_RS00175 at 40.892 kb on + strand at 40.892 kb on + strand at 40.892 kb on + strand at 40.892 kb on + strand at 40.892 kb on + strand at 40.892 kb on + strand at 40.892 kb on + strand at 40.892 kb on + strand at 40.892 kb on + strand at 40.892 kb on + strand at 40.893 kb on - strand at 40.893 kb on - strand at 40.893 kb on - strand at 40.893 kb on - strand at 40.893 kb on - strand at 40.893 kb on - strand at 40.893 kb on - strand at 40.893 kb on - strand at 40.893 kb on - strand at 40.893 kb on - strand at 40.931 kb on + strand at 40.943 kb on + strand at 40.943 kb on + strand at 40.943 kb on + strand at 40.943 kb on + strand at 40.943 kb on + strand at 40.943 kb on + strand at 40.944 kb on - strand at 40.944 kb on - strand at 40.944 kb on - strand at 40.944 kb on - strand at 40.944 kb on - strand at 40.944 kb on - strand at 40.980 kb on + strand at 40.980 kb on + strand at 40.980 kb on + strand at 40.980 kb on + strand at 40.990 kb on + strand at 40.990 kb on + strand at 40.991 kb on - strand at 41.048 kb on + strand at 41.048 kb on + strand at 41.049 kb on - strand at 41.092 kb on + strand at 41.092 kb on + strand at 41.092 kb on + strand at 41.092 kb on + strand at 41.092 kb on + strand at 41.092 kb on + strand at 41.093 kb on - strand at 41.093 kb on - strand at 41.093 kb on - strand at 41.093 kb on - strand at 41.093 kb on - strand at 41.093 kb on - strand at 41.093 kb on - strand at 41.093 kb on - strand at 41.093 kb on - strand at 41.138 kb on + strand at 41.138 kb on + strand at 41.139 kb on - strand at 41.207 kb on - strand at 41.234 kb on + strand at 41.235 kb on - strand at 41.235 kb on - strand at 41.235 kb on - strand at 41.235 kb on - strand at 41.235 kb on - strand at 41.238 kb on + strand at 41.238 kb on + strand at 41.238 kb on + strand at 41.238 kb on + strand at 41.238 kb on + strand at 41.238 kb on + strand at 41.239 kb on - strand at 41.239 kb on - strand at 41.239 kb on - strand at 41.239 kb on - strand at 41.239 kb on - strand at 41.239 kb on - strand at 41.239 kb on - strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.288 kb on - strand at 41.436 kb on - strand, within LRK54_RS00180 at 41.483 kb on - strand, within LRK54_RS00180 at 41.483 kb on - strand, within LRK54_RS00180 at 41.483 kb on - strand, within LRK54_RS00180 at 41.489 kb on - strand, within LRK54_RS00180 at 41.504 kb on - strand, within LRK54_RS00180 at 41.504 kb on - strand, within LRK54_RS00180 at 41.548 kb on + strand, within LRK54_RS00180 at 41.548 kb on + strand, within LRK54_RS00180 at 41.548 kb on + strand, within LRK54_RS00180 at 41.549 kb on - strand, within LRK54_RS00180 at 41.549 kb on - strand, within LRK54_RS00180 at 41.598 kb on + strand, within LRK54_RS00180 at 41.598 kb on + strand, within LRK54_RS00180 at 41.598 kb on + strand, within LRK54_RS00180 at 41.598 kb on + strand, within LRK54_RS00180 at 41.598 kb on + strand, within LRK54_RS00180 at 41.599 kb on - strand, within LRK54_RS00180 at 41.599 kb on - strand, within LRK54_RS00180 at 41.599 kb on - strand, within LRK54_RS00180 at 41.653 kb on - strand, within LRK54_RS00180 at 41.686 kb on + strand, within LRK54_RS00180 at 41.687 kb on - strand, within LRK54_RS00180 at 41.687 kb on - strand, within LRK54_RS00180 at 41.781 kb on + strand, within LRK54_RS00180 at 41.781 kb on + strand, within LRK54_RS00180 at 41.781 kb on + strand, within LRK54_RS00180 at 41.782 kb on - strand, within LRK54_RS00180 at 41.782 kb on - strand, within LRK54_RS00180 at 41.782 kb on - strand, within LRK54_RS00180 at 41.858 kb on + strand, within LRK54_RS00180 at 41.858 kb on + strand, within LRK54_RS00180 at 41.859 kb on - strand, within LRK54_RS00180 at 41.859 kb on - strand, within LRK54_RS00180 at 41.859 kb on - strand, within LRK54_RS00180 at 41.859 kb on - strand, within LRK54_RS00180
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 40,104 + -0.7 40,115 + +0.0 40,115 + +0.2 40,115 + -0.4 40,115 + -0.1 40,121 + +0.4 40,121 + -0.1 40,121 + +0.1 40,125 + -0.6 40,125 + -0.4 40,125 + -0.4 40,126 - -0.5 40,303 + -0.5 40,303 + -0.4 40,303 + +0.7 40,303 + -0.4 40,303 + -0.8 40,303 + +0.6 40,303 + -1.0 40,303 + -0.6 40,303 + +0.2 40,303 + -0.3 40,303 + -1.0 40,303 + -0.3 40,303 + -0.5 40,303 + -0.5 40,303 + -0.3 40,303 + -0.1 40,303 + -0.4 40,303 + +0.7 40,303 + +0.2 40,303 + +0.0 40,303 + -0.6 40,303 + +0.2 40,303 + +0.5 40,303 + -0.3 40,303 + -0.5 40,303 + -0.2 40,303 + +0.3 40,303 + -0.2 40,303 + -0.3 40,303 + +0.2 40,303 + +0.0 40,303 + -0.8 40,303 + +0.6 40,303 + +0.4 40,303 + -0.7 40,303 + +0.7 40,303 + -0.1 40,303 + -0.5 40,303 + -0.2 40,303 + -0.5 40,303 + +1.5 40,303 + -0.4 40,303 + +1.6 40,303 + -0.3 40,303 + +0.5 40,303 + -0.1 40,303 + +0.4 40,303 + +0.5 40,303 + -0.4 40,303 + -0.5 40,303 + -0.3 40,303 + +0.3 40,303 + -0.3 40,303 + -1.0 40,303 + -0.2 40,303 + +0.1 40,303 + +0.9 40,303 + +2.3 40,303 + -1.4 40,303 + +0.5 40,303 + -0.1 40,303 + -0.5 40,303 + -0.3 40,303 + +0.8 40,303 + -0.3 40,304 - +0.2 40,304 - -0.9 40,304 - -0.3 40,304 - -0.6 40,304 - -0.9 40,304 - -0.7 40,304 - -0.2 40,304 - -1.2 40,304 - -0.1 40,304 - +0.9 40,304 - -0.3 40,304 - +0.2 40,304 - -0.4 40,304 - -0.7 40,304 - -1.0 40,304 - -0.1 40,304 - -1.2 40,304 - -0.9 40,304 - -0.3 40,304 - -1.5 40,304 - -0.5 40,304 - -0.8 40,304 - +0.2 40,304 - -0.3 40,304 - -0.2 40,304 - -1.0 40,304 - -0.1 40,304 - -0.5 40,304 - -0.1 40,304 - +0.2 40,304 - -0.7 40,304 - -0.3 40,304 - -0.5 40,304 - +1.0 40,304 - -0.4 40,304 - -1.0 40,304 - -0.5 40,304 - -0.1 40,304 - -1.7 40,304 - -1.0 40,304 - -0.5 40,304 - -0.4 40,304 - -1.0 40,304 - +1.1 40,304 - -0.7 40,304 - +0.5 40,304 - +0.6 40,304 - -0.4 40,304 - +0.5 40,304 - -1.0 40,304 - -0.0 40,304 - -1.2 40,304 - +0.0 40,304 - -1.2 40,304 - -0.7 40,304 - -0.2 40,304 - -0.9 40,330 + +0.4 40,330 + -0.4 40,330 + -0.2 40,330 + -1.5 40,483 + -0.1 40,483 + +0.2 40,483 + +0.5 40,484 - +0.4 40,484 - -1.0 40,484 - -0.5 40,484 - -0.5 40,510 + +0.2 40,510 + +0.2 40,510 + -0.3 40,511 - -1.2 40,511 - -0.6 40,511 - -0.3 40,511 - +0.1 40,511 - -0.2 40,724 + LRK54_RS00175 0.47 -0.5 40,725 - LRK54_RS00175 0.48 -1.0 40,725 - LRK54_RS00175 0.48 -0.6 40,725 - LRK54_RS00175 0.48 -0.5 40,725 - LRK54_RS00175 0.48 -1.7 40,892 + -1.2 40,892 + +2.3 40,892 + -0.4 40,892 + -1.3 40,892 + -0.7 40,892 + -0.3 40,892 + +0.5 40,892 + -0.2 40,892 + -0.6 40,892 + -1.6 40,893 - +0.9 40,893 - -0.5 40,893 - +0.0 40,893 - -1.0 40,893 - -0.9 40,893 - -0.0 40,893 - +1.0 40,893 - +0.5 40,893 - -0.2 40,893 - -0.2 40,931 + -0.7 40,943 + -0.0 40,943 + -1.1 40,943 + -0.9 40,943 + -0.1 40,943 + -0.4 40,943 + -0.6 40,944 - -0.5 40,944 - -0.5 40,944 - -0.4 40,944 - -0.6 40,944 - -0.8 40,944 - +0.9 40,980 + -0.1 40,980 + -1.3 40,980 + -0.2 40,980 + -1.0 40,990 + +0.2 40,990 + +1.3 40,991 - +0.7 41,048 + -0.5 41,048 + -1.7 41,049 - -0.6 41,092 + -0.2 41,092 + -0.8 41,092 + -1.5 41,092 + +0.4 41,092 + +0.1 41,092 + -2.3 41,093 - +0.3 41,093 - -0.1 41,093 - -0.4 41,093 - -1.7 41,093 - +0.6 41,093 - -1.5 41,093 - -0.8 41,093 - +0.1 41,093 - -1.0 41,138 + -0.6 41,138 + -0.6 41,139 - -1.4 41,207 - -1.5 41,234 + +0.7 41,235 - -1.4 41,235 - +0.5 41,235 - -0.9 41,235 - +0.9 41,235 - -0.5 41,238 + -1.5 41,238 + -0.3 41,238 + -0.5 41,238 + -1.6 41,238 + -0.2 41,238 + -0.1 41,239 - -0.6 41,239 - -0.5 41,239 - -0.9 41,239 - -0.7 41,239 - -0.3 41,239 - -0.5 41,239 - -0.1 41,287 + -0.5 41,287 + -0.6 41,287 + +0.1 41,288 - -1.2 41,436 - LRK54_RS00180 0.13 -1.1 41,483 - LRK54_RS00180 0.17 +0.2 41,483 - LRK54_RS00180 0.17 +0.5 41,483 - LRK54_RS00180 0.17 -0.0 41,489 - LRK54_RS00180 0.18 -1.7 41,504 - LRK54_RS00180 0.19 -0.2 41,504 - LRK54_RS00180 0.19 -0.7 41,548 + LRK54_RS00180 0.23 -1.5 41,548 + LRK54_RS00180 0.23 -0.9 41,548 + LRK54_RS00180 0.23 -1.1 41,549 - LRK54_RS00180 0.23 -0.5 41,549 - LRK54_RS00180 0.23 -1.8 41,598 + LRK54_RS00180 0.27 -0.7 41,598 + LRK54_RS00180 0.27 -0.4 41,598 + LRK54_RS00180 0.27 -1.2 41,598 + LRK54_RS00180 0.27 -0.1 41,598 + LRK54_RS00180 0.27 -0.8 41,599 - LRK54_RS00180 0.27 -1.0 41,599 - LRK54_RS00180 0.27 -0.9 41,599 - LRK54_RS00180 0.27 -1.4 41,653 - LRK54_RS00180 0.32 +0.1 41,686 + LRK54_RS00180 0.35 -1.1 41,687 - LRK54_RS00180 0.35 -0.4 41,687 - LRK54_RS00180 0.35 -0.3 41,781 + LRK54_RS00180 0.44 -0.9 41,781 + LRK54_RS00180 0.44 -0.5 41,781 + LRK54_RS00180 0.44 -0.9 41,782 - LRK54_RS00180 0.44 +0.3 41,782 - LRK54_RS00180 0.44 +0.0 41,782 - LRK54_RS00180 0.44 +0.2 41,858 + LRK54_RS00180 0.50 -0.3 41,858 + LRK54_RS00180 0.50 -1.4 41,859 - LRK54_RS00180 0.50 +0.6 41,859 - LRK54_RS00180 0.50 -0.2 41,859 - LRK54_RS00180 0.50 -1.2 41,859 - LRK54_RS00180 0.50 -1.1
Or see this region's nucleotide sequence