Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20375

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20360 and ABIE40_RS20365 are separated by 4 nucleotidesABIE40_RS20365 and ABIE40_RS20370 overlap by 4 nucleotidesABIE40_RS20370 and ABIE40_RS20375 are separated by 80 nucleotidesABIE40_RS20375 and ABIE40_RS20380 are separated by 116 nucleotides ABIE40_RS20360: ABIE40_RS20360 - urocanate hydratase, at 178,416 to 180,101 _RS20360 ABIE40_RS20365: ABIE40_RS20365 - type II toxin-antitoxin system VapC family toxin, at 180,106 to 180,495 _RS20365 ABIE40_RS20370: ABIE40_RS20370 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 180,492 to 180,755 _RS20370 ABIE40_RS20375: ABIE40_RS20375 - HutD family protein, at 180,836 to 181,411 _RS20375 ABIE40_RS20380: ABIE40_RS20380 - ABC transporter substrate-binding protein, at 181,528 to 182,475 _RS20380 Position (kb) 180 181 182Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 180.036 kb on + strandat 180.222 kb on + strand, within ABIE40_RS20365at 180.223 kb on - strand, within ABIE40_RS20365at 180.289 kb on + strand, within ABIE40_RS20365at 180.289 kb on + strand, within ABIE40_RS20365at 180.289 kb on + strand, within ABIE40_RS20365at 180.289 kb on + strand, within ABIE40_RS20365at 180.290 kb on - strand, within ABIE40_RS20365at 180.290 kb on - strand, within ABIE40_RS20365at 180.290 kb on - strand, within ABIE40_RS20365at 180.290 kb on - strand, within ABIE40_RS20365at 180.290 kb on - strand, within ABIE40_RS20365at 180.471 kb on + strandat 180.471 kb on + strandat 180.471 kb on + strandat 180.471 kb on + strandat 180.471 kb on + strandat 180.471 kb on + strandat 180.472 kb on + strandat 180.472 kb on - strandat 180.472 kb on - strandat 180.472 kb on - strandat 180.472 kb on - strandat 180.472 kb on - strandat 180.477 kb on + strandat 180.523 kb on + strand, within ABIE40_RS20370at 180.524 kb on - strand, within ABIE40_RS20370at 180.775 kb on + strandat 180.776 kb on - strandat 180.790 kb on - strandat 180.906 kb on + strand, within ABIE40_RS20375at 181.086 kb on + strand, within ABIE40_RS20375at 181.086 kb on + strand, within ABIE40_RS20375at 181.086 kb on + strand, within ABIE40_RS20375at 181.086 kb on + strand, within ABIE40_RS20375at 181.086 kb on + strand, within ABIE40_RS20375at 181.086 kb on + strand, within ABIE40_RS20375at 181.086 kb on + strand, within ABIE40_RS20375at 181.086 kb on + strand, within ABIE40_RS20375at 181.087 kb on - strand, within ABIE40_RS20375at 181.087 kb on - strand, within ABIE40_RS20375at 181.087 kb on - strand, within ABIE40_RS20375at 181.087 kb on - strand, within ABIE40_RS20375at 181.087 kb on - strand, within ABIE40_RS20375at 181.087 kb on - strand, within ABIE40_RS20375at 181.087 kb on - strand, within ABIE40_RS20375at 181.087 kb on - strand, within ABIE40_RS20375at 181.087 kb on - strand, within ABIE40_RS20375at 181.150 kb on - strand, within ABIE40_RS20375at 181.150 kb on - strand, within ABIE40_RS20375at 181.219 kb on + strand, within ABIE40_RS20375at 181.219 kb on + strand, within ABIE40_RS20375at 181.220 kb on - strand, within ABIE40_RS20375at 181.220 kb on - strand, within ABIE40_RS20375at 181.220 kb on - strand, within ABIE40_RS20375at 181.220 kb on - strand, within ABIE40_RS20375at 181.289 kb on + strand, within ABIE40_RS20375at 181.289 kb on + strand, within ABIE40_RS20375at 181.289 kb on + strand, within ABIE40_RS20375at 181.289 kb on + strand, within ABIE40_RS20375at 181.289 kb on + strand, within ABIE40_RS20375at 181.289 kb on + strand, within ABIE40_RS20375at 181.289 kb on + strand, within ABIE40_RS20375at 181.289 kb on + strand, within ABIE40_RS20375at 181.289 kb on + strand, within ABIE40_RS20375at 181.289 kb on + strand, within ABIE40_RS20375at 181.289 kb on + strand, within ABIE40_RS20375at 181.289 kb on + strand, within ABIE40_RS20375at 181.289 kb on + strand, within ABIE40_RS20375at 181.290 kb on - strand, within ABIE40_RS20375at 181.290 kb on - strand, within ABIE40_RS20375at 181.290 kb on - strand, within ABIE40_RS20375at 181.290 kb on - strand, within ABIE40_RS20375at 181.290 kb on - strand, within ABIE40_RS20375at 181.290 kb on - strand, within ABIE40_RS20375at 181.290 kb on - strand, within ABIE40_RS20375at 181.332 kb on + strand, within ABIE40_RS20375at 181.441 kb on - strandat 181.545 kb on + strandat 181.546 kb on - strandat 181.546 kb on - strandat 181.937 kb on - strand, within ABIE40_RS20380at 181.937 kb on - strand, within ABIE40_RS20380at 181.937 kb on - strand, within ABIE40_RS20380at 182.062 kb on + strand, within ABIE40_RS20380at 182.062 kb on + strand, within ABIE40_RS20380at 182.062 kb on + strand, within ABIE40_RS20380at 182.062 kb on + strand, within ABIE40_RS20380at 182.062 kb on + strand, within ABIE40_RS20380at 182.063 kb on - strand, within ABIE40_RS20380at 182.063 kb on - strand, within ABIE40_RS20380at 182.063 kb on - strand, within ABIE40_RS20380at 182.063 kb on - strand, within ABIE40_RS20380at 182.063 kb on - strand, within ABIE40_RS20380at 182.063 kb on - strand, within ABIE40_RS20380at 182.071 kb on + strand, within ABIE40_RS20380at 182.072 kb on - strand, within ABIE40_RS20380at 182.216 kb on - strand, within ABIE40_RS20380at 182.218 kb on + strand, within ABIE40_RS20380at 182.321 kb on - strand, within ABIE40_RS20380at 182.321 kb on - strand, within ABIE40_RS20380

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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180,036 + -4.7
180,222 + ABIE40_RS20365 0.30 +0.6
180,223 - ABIE40_RS20365 0.30 -1.8
180,289 + ABIE40_RS20365 0.47 -0.2
180,289 + ABIE40_RS20365 0.47 +0.6
180,289 + ABIE40_RS20365 0.47 -0.9
180,289 + ABIE40_RS20365 0.47 -0.3
180,290 - ABIE40_RS20365 0.47 -2.0
180,290 - ABIE40_RS20365 0.47 -1.7
180,290 - ABIE40_RS20365 0.47 +0.3
180,290 - ABIE40_RS20365 0.47 -0.7
180,290 - ABIE40_RS20365 0.47 -1.4
180,471 + -0.7
180,471 + +0.2
180,471 + -2.3
180,471 + +0.4
180,471 + +0.6
180,471 + -0.4
180,472 + -0.9
180,472 - -0.4
180,472 - -1.6
180,472 - -1.2
180,472 - -0.9
180,472 - -1.3
180,477 + -1.3
180,523 + ABIE40_RS20370 0.12 -0.4
180,524 - ABIE40_RS20370 0.12 -2.0
180,775 + -0.6
180,776 - -0.5
180,790 - -0.7
180,906 + ABIE40_RS20375 0.12 -1.3
181,086 + ABIE40_RS20375 0.43 -2.9
181,086 + ABIE40_RS20375 0.43 -1.6
181,086 + ABIE40_RS20375 0.43 -2.3
181,086 + ABIE40_RS20375 0.43 -1.1
181,086 + ABIE40_RS20375 0.43 -0.8
181,086 + ABIE40_RS20375 0.43 -3.4
181,086 + ABIE40_RS20375 0.43 -1.9
181,086 + ABIE40_RS20375 0.43 -2.0
181,087 - ABIE40_RS20375 0.44 -3.7
181,087 - ABIE40_RS20375 0.44 -2.4
181,087 - ABIE40_RS20375 0.44 -3.4
181,087 - ABIE40_RS20375 0.44 -0.7
181,087 - ABIE40_RS20375 0.44 -2.7
181,087 - ABIE40_RS20375 0.44 -1.1
181,087 - ABIE40_RS20375 0.44 -3.0
181,087 - ABIE40_RS20375 0.44 -2.9
181,087 - ABIE40_RS20375 0.44 -2.3
181,150 - ABIE40_RS20375 0.55 -1.3
181,150 - ABIE40_RS20375 0.55 -2.0
181,219 + ABIE40_RS20375 0.66 +0.6
181,219 + ABIE40_RS20375 0.66 -2.0
181,220 - ABIE40_RS20375 0.67 -0.8
181,220 - ABIE40_RS20375 0.67 -1.9
181,220 - ABIE40_RS20375 0.67 -2.0
181,220 - ABIE40_RS20375 0.67 -1.1
181,289 + ABIE40_RS20375 0.79 -2.4
181,289 + ABIE40_RS20375 0.79 -1.1
181,289 + ABIE40_RS20375 0.79 -3.7
181,289 + ABIE40_RS20375 0.79 -2.4
181,289 + ABIE40_RS20375 0.79 -4.5
181,289 + ABIE40_RS20375 0.79 -1.2
181,289 + ABIE40_RS20375 0.79 +0.5
181,289 + ABIE40_RS20375 0.79 -4.3
181,289 + ABIE40_RS20375 0.79 -2.1
181,289 + ABIE40_RS20375 0.79 -1.0
181,289 + ABIE40_RS20375 0.79 -2.3
181,289 + ABIE40_RS20375 0.79 -2.4
181,289 + ABIE40_RS20375 0.79 -3.1
181,290 - ABIE40_RS20375 0.79 -3.2
181,290 - ABIE40_RS20375 0.79 -1.9
181,290 - ABIE40_RS20375 0.79 -4.2
181,290 - ABIE40_RS20375 0.79 -1.5
181,290 - ABIE40_RS20375 0.79 -0.1
181,290 - ABIE40_RS20375 0.79 -2.1
181,290 - ABIE40_RS20375 0.79 -1.9
181,332 + ABIE40_RS20375 0.86 -1.9
181,441 - +0.2
181,545 + +0.3
181,546 - +0.4
181,546 - +0.9
181,937 - ABIE40_RS20380 0.43 +1.2
181,937 - ABIE40_RS20380 0.43 -1.8
181,937 - ABIE40_RS20380 0.43 +1.0
182,062 + ABIE40_RS20380 0.56 +0.5
182,062 + ABIE40_RS20380 0.56 +0.4
182,062 + ABIE40_RS20380 0.56 +0.6
182,062 + ABIE40_RS20380 0.56 -0.4
182,062 + ABIE40_RS20380 0.56 +2.9
182,063 - ABIE40_RS20380 0.56 -0.2
182,063 - ABIE40_RS20380 0.56 +0.7
182,063 - ABIE40_RS20380 0.56 +0.6
182,063 - ABIE40_RS20380 0.56 -0.1
182,063 - ABIE40_RS20380 0.56 +0.8
182,063 - ABIE40_RS20380 0.56 +0.2
182,071 + ABIE40_RS20380 0.57 +0.5
182,072 - ABIE40_RS20380 0.57 +0.2
182,216 - ABIE40_RS20380 0.73 -1.3
182,218 + ABIE40_RS20380 0.73 +0.5
182,321 - ABIE40_RS20380 0.84 +0.6
182,321 - ABIE40_RS20380 0.84 +2.0

Or see this region's nucleotide sequence