Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20355

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20350 and ABIE40_RS20355 overlap by 4 nucleotidesABIE40_RS20355 and ABIE40_RS20360 are separated by 1 nucleotides ABIE40_RS20350: ABIE40_RS20350 - imidazolonepropionase, at 175,632 to 176,882 _RS20350 ABIE40_RS20355: ABIE40_RS20355 - histidine ammonia-lyase, at 176,879 to 178,414 _RS20355 ABIE40_RS20360: ABIE40_RS20360 - urocanate hydratase, at 178,416 to 180,101 _RS20360 Position (kb) 176 177 178 179Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 175.887 kb on + strand, within ABIE40_RS20350at 175.888 kb on - strand, within ABIE40_RS20350at 175.888 kb on - strand, within ABIE40_RS20350at 175.938 kb on + strand, within ABIE40_RS20350at 175.938 kb on + strand, within ABIE40_RS20350at 175.938 kb on + strand, within ABIE40_RS20350at 175.939 kb on - strand, within ABIE40_RS20350at 175.939 kb on - strand, within ABIE40_RS20350at 175.939 kb on - strand, within ABIE40_RS20350at 175.939 kb on - strand, within ABIE40_RS20350at 175.939 kb on - strand, within ABIE40_RS20350at 175.939 kb on - strand, within ABIE40_RS20350at 176.175 kb on + strand, within ABIE40_RS20350at 176.175 kb on + strand, within ABIE40_RS20350at 176.205 kb on + strand, within ABIE40_RS20350at 176.206 kb on - strand, within ABIE40_RS20350at 176.226 kb on + strand, within ABIE40_RS20350at 176.226 kb on + strand, within ABIE40_RS20350at 176.226 kb on + strand, within ABIE40_RS20350at 176.226 kb on + strand, within ABIE40_RS20350at 176.226 kb on + strand, within ABIE40_RS20350at 176.226 kb on + strand, within ABIE40_RS20350at 176.227 kb on - strand, within ABIE40_RS20350at 176.228 kb on + strand, within ABIE40_RS20350at 176.229 kb on - strand, within ABIE40_RS20350at 176.243 kb on - strand, within ABIE40_RS20350at 176.243 kb on - strand, within ABIE40_RS20350at 176.532 kb on + strand, within ABIE40_RS20350at 176.533 kb on - strand, within ABIE40_RS20350at 176.854 kb on - strandat 176.933 kb on + strandat 176.933 kb on + strandat 176.933 kb on + strandat 176.934 kb on - strandat 176.934 kb on - strandat 176.934 kb on - strandat 176.934 kb on - strandat 177.035 kb on + strand, within ABIE40_RS20355at 177.331 kb on + strand, within ABIE40_RS20355at 177.332 kb on - strand, within ABIE40_RS20355at 177.332 kb on - strand, within ABIE40_RS20355at 177.601 kb on + strand, within ABIE40_RS20355at 177.601 kb on + strand, within ABIE40_RS20355at 177.601 kb on + strand, within ABIE40_RS20355at 177.601 kb on + strand, within ABIE40_RS20355at 177.602 kb on - strand, within ABIE40_RS20355at 177.686 kb on - strand, within ABIE40_RS20355at 177.716 kb on + strand, within ABIE40_RS20355at 177.716 kb on + strand, within ABIE40_RS20355at 177.716 kb on + strand, within ABIE40_RS20355at 177.717 kb on - strand, within ABIE40_RS20355at 177.717 kb on - strand, within ABIE40_RS20355at 177.782 kb on - strand, within ABIE40_RS20355at 177.971 kb on + strand, within ABIE40_RS20355at 177.972 kb on - strand, within ABIE40_RS20355at 177.972 kb on - strand, within ABIE40_RS20355at 178.316 kb on + strandat 178.316 kb on + strandat 178.317 kb on - strandat 178.476 kb on - strandat 178.566 kb on + strandat 178.685 kb on - strand, within ABIE40_RS20360at 178.797 kb on + strand, within ABIE40_RS20360at 178.798 kb on - strand, within ABIE40_RS20360at 178.827 kb on + strand, within ABIE40_RS20360at 178.827 kb on + strand, within ABIE40_RS20360at 178.827 kb on + strand, within ABIE40_RS20360at 178.827 kb on + strand, within ABIE40_RS20360at 178.827 kb on + strand, within ABIE40_RS20360at 178.827 kb on + strand, within ABIE40_RS20360at 178.828 kb on - strand, within ABIE40_RS20360at 178.828 kb on - strand, within ABIE40_RS20360at 178.828 kb on - strand, within ABIE40_RS20360at 178.828 kb on - strand, within ABIE40_RS20360at 178.828 kb on - strand, within ABIE40_RS20360at 178.828 kb on - strand, within ABIE40_RS20360at 178.828 kb on - strand, within ABIE40_RS20360at 178.828 kb on - strand, within ABIE40_RS20360at 178.828 kb on - strand, within ABIE40_RS20360at 178.828 kb on - strand, within ABIE40_RS20360at 178.829 kb on + strand, within ABIE40_RS20360at 178.829 kb on + strand, within ABIE40_RS20360at 178.860 kb on + strand, within ABIE40_RS20360at 178.894 kb on + strand, within ABIE40_RS20360at 178.894 kb on - strand, within ABIE40_RS20360at 178.894 kb on - strand, within ABIE40_RS20360at 178.913 kb on + strand, within ABIE40_RS20360at 178.913 kb on + strand, within ABIE40_RS20360at 179.245 kb on - strand, within ABIE40_RS20360

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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175,887 + ABIE40_RS20350 0.20 -1.1
175,888 - ABIE40_RS20350 0.20 -0.9
175,888 - ABIE40_RS20350 0.20 -2.1
175,938 + ABIE40_RS20350 0.24 -4.1
175,938 + ABIE40_RS20350 0.24 -4.0
175,938 + ABIE40_RS20350 0.24 -5.5
175,939 - ABIE40_RS20350 0.25 -3.0
175,939 - ABIE40_RS20350 0.25 -2.4
175,939 - ABIE40_RS20350 0.25 -2.4
175,939 - ABIE40_RS20350 0.25 -3.5
175,939 - ABIE40_RS20350 0.25 -3.0
175,939 - ABIE40_RS20350 0.25 -3.1
176,175 + ABIE40_RS20350 0.43 -4.3
176,175 + ABIE40_RS20350 0.43 -4.7
176,205 + ABIE40_RS20350 0.46 -2.0
176,206 - ABIE40_RS20350 0.46 -3.9
176,226 + ABIE40_RS20350 0.47 -1.7
176,226 + ABIE40_RS20350 0.47 +0.9
176,226 + ABIE40_RS20350 0.47 -4.3
176,226 + ABIE40_RS20350 0.47 -3.6
176,226 + ABIE40_RS20350 0.47 -1.7
176,226 + ABIE40_RS20350 0.47 -2.7
176,227 - ABIE40_RS20350 0.48 -5.1
176,228 + ABIE40_RS20350 0.48 -3.8
176,229 - ABIE40_RS20350 0.48 -2.9
176,243 - ABIE40_RS20350 0.49 -4.8
176,243 - ABIE40_RS20350 0.49 -4.9
176,532 + ABIE40_RS20350 0.72 -1.1
176,533 - ABIE40_RS20350 0.72 -5.6
176,854 - -3.7
176,933 + -3.9
176,933 + -2.6
176,933 + -3.9
176,934 - -5.3
176,934 - -2.6
176,934 - -5.6
176,934 - -2.0
177,035 + ABIE40_RS20355 0.10 -6.4
177,331 + ABIE40_RS20355 0.29 -3.1
177,332 - ABIE40_RS20355 0.29 -4.0
177,332 - ABIE40_RS20355 0.29 -3.9
177,601 + ABIE40_RS20355 0.47 -1.3
177,601 + ABIE40_RS20355 0.47 -3.3
177,601 + ABIE40_RS20355 0.47 -5.8
177,601 + ABIE40_RS20355 0.47 -2.3
177,602 - ABIE40_RS20355 0.47 -4.9
177,686 - ABIE40_RS20355 0.53 -4.0
177,716 + ABIE40_RS20355 0.54 -3.7
177,716 + ABIE40_RS20355 0.54 -2.0
177,716 + ABIE40_RS20355 0.54 -3.5
177,717 - ABIE40_RS20355 0.55 -3.2
177,717 - ABIE40_RS20355 0.55 -3.8
177,782 - ABIE40_RS20355 0.59 -1.1
177,971 + ABIE40_RS20355 0.71 -3.6
177,972 - ABIE40_RS20355 0.71 -5.4
177,972 - ABIE40_RS20355 0.71 -5.6
178,316 + -3.7
178,316 + -5.1
178,317 - -2.6
178,476 - -1.1
178,566 + -4.1
178,685 - ABIE40_RS20360 0.16 -0.7
178,797 + ABIE40_RS20360 0.23 -3.9
178,798 - ABIE40_RS20360 0.23 -4.8
178,827 + ABIE40_RS20360 0.24 -5.2
178,827 + ABIE40_RS20360 0.24 -5.3
178,827 + ABIE40_RS20360 0.24 -2.6
178,827 + ABIE40_RS20360 0.24 -1.1
178,827 + ABIE40_RS20360 0.24 -1.9
178,827 + ABIE40_RS20360 0.24 -2.9
178,828 - ABIE40_RS20360 0.24 -1.6
178,828 - ABIE40_RS20360 0.24 -2.6
178,828 - ABIE40_RS20360 0.24 -2.4
178,828 - ABIE40_RS20360 0.24 -5.0
178,828 - ABIE40_RS20360 0.24 -1.6
178,828 - ABIE40_RS20360 0.24 -2.4
178,828 - ABIE40_RS20360 0.24 -4.4
178,828 - ABIE40_RS20360 0.24 +0.3
178,828 - ABIE40_RS20360 0.24 -2.5
178,828 - ABIE40_RS20360 0.24 -3.3
178,829 + ABIE40_RS20360 0.24 -4.1
178,829 + ABIE40_RS20360 0.24 -2.5
178,860 + ABIE40_RS20360 0.26 -5.6
178,894 + ABIE40_RS20360 0.28 -4.7
178,894 - ABIE40_RS20360 0.28 -1.6
178,894 - ABIE40_RS20360 0.28 -0.9
178,913 + ABIE40_RS20360 0.29 -5.8
178,913 + ABIE40_RS20360 0.29 -2.3
179,245 - ABIE40_RS20360 0.49 -2.7

Or see this region's nucleotide sequence