Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20350

Experiment: D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS20345 and ABIE40_RS20350 are separated by 116 nucleotidesABIE40_RS20350 and ABIE40_RS20355 overlap by 4 nucleotides ABIE40_RS20345: ABIE40_RS20345 - formimidoylglutamate deiminase, at 174,169 to 175,515 _RS20345 ABIE40_RS20350: ABIE40_RS20350 - imidazolonepropionase, at 175,632 to 176,882 _RS20350 ABIE40_RS20355: ABIE40_RS20355 - histidine ammonia-lyase, at 176,879 to 178,414 _RS20355 Position (kb) 175 176 177Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 174.828 kb on + strand, within ABIE40_RS20345at 174.828 kb on + strand, within ABIE40_RS20345at 174.829 kb on - strand, within ABIE40_RS20345at 174.829 kb on - strand, within ABIE40_RS20345at 174.933 kb on + strand, within ABIE40_RS20345at 175.043 kb on + strand, within ABIE40_RS20345at 175.044 kb on - strand, within ABIE40_RS20345at 175.044 kb on - strand, within ABIE40_RS20345at 175.044 kb on - strand, within ABIE40_RS20345at 175.044 kb on - strand, within ABIE40_RS20345at 175.044 kb on - strand, within ABIE40_RS20345at 175.045 kb on + strand, within ABIE40_RS20345at 175.127 kb on + strand, within ABIE40_RS20345at 175.157 kb on + strand, within ABIE40_RS20345at 175.158 kb on - strand, within ABIE40_RS20345at 175.205 kb on + strand, within ABIE40_RS20345at 175.205 kb on + strand, within ABIE40_RS20345at 175.205 kb on + strand, within ABIE40_RS20345at 175.205 kb on + strand, within ABIE40_RS20345at 175.206 kb on - strand, within ABIE40_RS20345at 175.206 kb on - strand, within ABIE40_RS20345at 175.206 kb on - strand, within ABIE40_RS20345at 175.206 kb on - strand, within ABIE40_RS20345at 175.262 kb on + strand, within ABIE40_RS20345at 175.263 kb on - strand, within ABIE40_RS20345at 175.263 kb on - strand, within ABIE40_RS20345at 175.263 kb on - strand, within ABIE40_RS20345at 175.263 kb on - strand, within ABIE40_RS20345at 175.263 kb on - strand, within ABIE40_RS20345at 175.263 kb on - strand, within ABIE40_RS20345at 175.594 kb on + strandat 175.595 kb on - strandat 175.599 kb on - strandat 175.612 kb on + strandat 175.612 kb on + strandat 175.613 kb on - strandat 175.613 kb on - strandat 175.613 kb on - strandat 175.624 kb on + strandat 175.624 kb on + strandat 175.624 kb on + strandat 175.643 kb on + strandat 175.773 kb on + strand, within ABIE40_RS20350at 175.774 kb on - strand, within ABIE40_RS20350at 175.887 kb on + strand, within ABIE40_RS20350at 175.888 kb on - strand, within ABIE40_RS20350at 175.888 kb on - strand, within ABIE40_RS20350at 175.938 kb on + strand, within ABIE40_RS20350at 175.938 kb on + strand, within ABIE40_RS20350at 175.938 kb on + strand, within ABIE40_RS20350at 175.939 kb on - strand, within ABIE40_RS20350at 175.939 kb on - strand, within ABIE40_RS20350at 175.939 kb on - strand, within ABIE40_RS20350at 175.939 kb on - strand, within ABIE40_RS20350at 175.939 kb on - strand, within ABIE40_RS20350at 175.939 kb on - strand, within ABIE40_RS20350at 176.175 kb on + strand, within ABIE40_RS20350at 176.175 kb on + strand, within ABIE40_RS20350at 176.205 kb on + strand, within ABIE40_RS20350at 176.206 kb on - strand, within ABIE40_RS20350at 176.226 kb on + strand, within ABIE40_RS20350at 176.226 kb on + strand, within ABIE40_RS20350at 176.226 kb on + strand, within ABIE40_RS20350at 176.226 kb on + strand, within ABIE40_RS20350at 176.226 kb on + strand, within ABIE40_RS20350at 176.226 kb on + strand, within ABIE40_RS20350at 176.227 kb on - strand, within ABIE40_RS20350at 176.228 kb on + strand, within ABIE40_RS20350at 176.229 kb on - strand, within ABIE40_RS20350at 176.243 kb on - strand, within ABIE40_RS20350at 176.243 kb on - strand, within ABIE40_RS20350at 176.532 kb on + strand, within ABIE40_RS20350at 176.533 kb on - strand, within ABIE40_RS20350at 176.854 kb on - strandat 176.933 kb on + strandat 176.933 kb on + strandat 176.933 kb on + strandat 176.934 kb on - strandat 176.934 kb on - strandat 176.934 kb on - strandat 176.934 kb on - strandat 177.035 kb on + strand, within ABIE40_RS20355at 177.331 kb on + strand, within ABIE40_RS20355at 177.332 kb on - strand, within ABIE40_RS20355at 177.332 kb on - strand, within ABIE40_RS20355at 177.601 kb on + strand, within ABIE40_RS20355at 177.601 kb on + strand, within ABIE40_RS20355at 177.601 kb on + strand, within ABIE40_RS20355at 177.601 kb on + strand, within ABIE40_RS20355at 177.602 kb on - strand, within ABIE40_RS20355at 177.686 kb on - strand, within ABIE40_RS20355at 177.716 kb on + strand, within ABIE40_RS20355at 177.716 kb on + strand, within ABIE40_RS20355at 177.716 kb on + strand, within ABIE40_RS20355at 177.717 kb on - strand, within ABIE40_RS20355at 177.717 kb on - strand, within ABIE40_RS20355at 177.782 kb on - strand, within ABIE40_RS20355

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
remove
174,828 + ABIE40_RS20345 0.49 -4.3
174,828 + ABIE40_RS20345 0.49 -4.8
174,829 - ABIE40_RS20345 0.49 -1.6
174,829 - ABIE40_RS20345 0.49 -2.3
174,933 + ABIE40_RS20345 0.57 -1.1
175,043 + ABIE40_RS20345 0.65 -4.3
175,044 - ABIE40_RS20345 0.65 -4.2
175,044 - ABIE40_RS20345 0.65 -3.5
175,044 - ABIE40_RS20345 0.65 -2.5
175,044 - ABIE40_RS20345 0.65 -4.9
175,044 - ABIE40_RS20345 0.65 -5.2
175,045 + ABIE40_RS20345 0.65 -4.9
175,127 + ABIE40_RS20345 0.71 -5.0
175,157 + ABIE40_RS20345 0.73 -5.3
175,158 - ABIE40_RS20345 0.73 -5.1
175,205 + ABIE40_RS20345 0.77 -4.3
175,205 + ABIE40_RS20345 0.77 -3.0
175,205 + ABIE40_RS20345 0.77 -3.6
175,205 + ABIE40_RS20345 0.77 -2.9
175,206 - ABIE40_RS20345 0.77 -5.7
175,206 - ABIE40_RS20345 0.77 -2.3
175,206 - ABIE40_RS20345 0.77 -4.0
175,206 - ABIE40_RS20345 0.77 -3.6
175,262 + ABIE40_RS20345 0.81 -3.1
175,263 - ABIE40_RS20345 0.81 -5.1
175,263 - ABIE40_RS20345 0.81 -5.7
175,263 - ABIE40_RS20345 0.81 -2.9
175,263 - ABIE40_RS20345 0.81 -4.8
175,263 - ABIE40_RS20345 0.81 -4.2
175,263 - ABIE40_RS20345 0.81 -4.9
175,594 + -3.5
175,595 - -3.3
175,599 - -4.4
175,612 + -4.2
175,612 + -1.6
175,613 - -3.5
175,613 - -5.3
175,613 - -1.5
175,624 + +0.9
175,624 + -5.1
175,624 + -2.1
175,643 + -3.2
175,773 + ABIE40_RS20350 0.11 -3.1
175,774 - ABIE40_RS20350 0.11 -2.4
175,887 + ABIE40_RS20350 0.20 -1.1
175,888 - ABIE40_RS20350 0.20 -0.9
175,888 - ABIE40_RS20350 0.20 -2.1
175,938 + ABIE40_RS20350 0.24 -4.1
175,938 + ABIE40_RS20350 0.24 -4.0
175,938 + ABIE40_RS20350 0.24 -5.5
175,939 - ABIE40_RS20350 0.25 -3.0
175,939 - ABIE40_RS20350 0.25 -2.4
175,939 - ABIE40_RS20350 0.25 -2.4
175,939 - ABIE40_RS20350 0.25 -3.5
175,939 - ABIE40_RS20350 0.25 -3.0
175,939 - ABIE40_RS20350 0.25 -3.1
176,175 + ABIE40_RS20350 0.43 -4.3
176,175 + ABIE40_RS20350 0.43 -4.7
176,205 + ABIE40_RS20350 0.46 -2.0
176,206 - ABIE40_RS20350 0.46 -3.9
176,226 + ABIE40_RS20350 0.47 -1.7
176,226 + ABIE40_RS20350 0.47 +0.9
176,226 + ABIE40_RS20350 0.47 -4.3
176,226 + ABIE40_RS20350 0.47 -3.6
176,226 + ABIE40_RS20350 0.47 -1.7
176,226 + ABIE40_RS20350 0.47 -2.7
176,227 - ABIE40_RS20350 0.48 -5.1
176,228 + ABIE40_RS20350 0.48 -3.8
176,229 - ABIE40_RS20350 0.48 -2.9
176,243 - ABIE40_RS20350 0.49 -4.8
176,243 - ABIE40_RS20350 0.49 -4.9
176,532 + ABIE40_RS20350 0.72 -1.1
176,533 - ABIE40_RS20350 0.72 -5.6
176,854 - -3.7
176,933 + -3.9
176,933 + -2.6
176,933 + -3.9
176,934 - -5.3
176,934 - -2.6
176,934 - -5.6
176,934 - -2.0
177,035 + ABIE40_RS20355 0.10 -6.4
177,331 + ABIE40_RS20355 0.29 -3.1
177,332 - ABIE40_RS20355 0.29 -4.0
177,332 - ABIE40_RS20355 0.29 -3.9
177,601 + ABIE40_RS20355 0.47 -1.3
177,601 + ABIE40_RS20355 0.47 -3.3
177,601 + ABIE40_RS20355 0.47 -5.8
177,601 + ABIE40_RS20355 0.47 -2.3
177,602 - ABIE40_RS20355 0.47 -4.9
177,686 - ABIE40_RS20355 0.53 -4.0
177,716 + ABIE40_RS20355 0.54 -3.7
177,716 + ABIE40_RS20355 0.54 -2.0
177,716 + ABIE40_RS20355 0.54 -3.5
177,717 - ABIE40_RS20355 0.55 -3.2
177,717 - ABIE40_RS20355 0.55 -3.8
177,782 - ABIE40_RS20355 0.59 -1.1

Or see this region's nucleotide sequence