Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20335 and ABIE40_RS20340 are separated by 77 nucleotides ABIE40_RS20340 and ABIE40_RS20345 are separated by 59 nucleotides ABIE40_RS20345 and ABIE40_RS20350 are separated by 116 nucleotides
ABIE40_RS20335: ABIE40_RS20335 - RHE_PE00001 family protein, at 172,197 to 173,315
_RS20335
ABIE40_RS20340: ABIE40_RS20340 - histidine utilization repressor, at 173,393 to 174,109
_RS20340
ABIE40_RS20345: ABIE40_RS20345 - formimidoylglutamate deiminase, at 174,169 to 175,515
_RS20345
ABIE40_RS20350: ABIE40_RS20350 - imidazolonepropionase, at 175,632 to 176,882
_RS20350
Position (kb) 174
175
176 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 173.245 kb on - strand at 173.245 kb on - strand at 173.344 kb on + strand at 173.353 kb on + strand at 173.442 kb on + strand at 173.442 kb on + strand at 173.442 kb on + strand at 173.442 kb on + strand at 173.443 kb on - strand at 173.443 kb on - strand at 173.443 kb on - strand at 173.443 kb on - strand at 173.820 kb on + strand, within ABIE40_RS20340 at 173.820 kb on + strand, within ABIE40_RS20340 at 173.821 kb on - strand, within ABIE40_RS20340 at 173.821 kb on - strand, within ABIE40_RS20340 at 173.988 kb on + strand, within ABIE40_RS20340 at 173.988 kb on + strand, within ABIE40_RS20340 at 173.988 kb on + strand, within ABIE40_RS20340 at 173.989 kb on - strand, within ABIE40_RS20340 at 174.109 kb on + strand at 174.109 kb on + strand at 174.141 kb on + strand at 174.142 kb on - strand at 174.335 kb on + strand, within ABIE40_RS20345 at 174.335 kb on + strand, within ABIE40_RS20345 at 174.336 kb on - strand, within ABIE40_RS20345 at 174.512 kb on + strand, within ABIE40_RS20345 at 174.828 kb on + strand, within ABIE40_RS20345 at 174.828 kb on + strand, within ABIE40_RS20345 at 174.829 kb on - strand, within ABIE40_RS20345 at 174.829 kb on - strand, within ABIE40_RS20345 at 174.933 kb on + strand, within ABIE40_RS20345 at 175.043 kb on + strand, within ABIE40_RS20345 at 175.044 kb on - strand, within ABIE40_RS20345 at 175.044 kb on - strand, within ABIE40_RS20345 at 175.044 kb on - strand, within ABIE40_RS20345 at 175.044 kb on - strand, within ABIE40_RS20345 at 175.044 kb on - strand, within ABIE40_RS20345 at 175.045 kb on + strand, within ABIE40_RS20345 at 175.127 kb on + strand, within ABIE40_RS20345 at 175.157 kb on + strand, within ABIE40_RS20345 at 175.158 kb on - strand, within ABIE40_RS20345 at 175.205 kb on + strand, within ABIE40_RS20345 at 175.205 kb on + strand, within ABIE40_RS20345 at 175.205 kb on + strand, within ABIE40_RS20345 at 175.205 kb on + strand, within ABIE40_RS20345 at 175.206 kb on - strand, within ABIE40_RS20345 at 175.206 kb on - strand, within ABIE40_RS20345 at 175.206 kb on - strand, within ABIE40_RS20345 at 175.206 kb on - strand, within ABIE40_RS20345 at 175.262 kb on + strand, within ABIE40_RS20345 at 175.263 kb on - strand, within ABIE40_RS20345 at 175.263 kb on - strand, within ABIE40_RS20345 at 175.263 kb on - strand, within ABIE40_RS20345 at 175.263 kb on - strand, within ABIE40_RS20345 at 175.263 kb on - strand, within ABIE40_RS20345 at 175.263 kb on - strand, within ABIE40_RS20345 at 175.594 kb on + strand at 175.595 kb on - strand at 175.599 kb on - strand at 175.612 kb on + strand at 175.612 kb on + strand at 175.613 kb on - strand at 175.613 kb on - strand at 175.613 kb on - strand at 175.624 kb on + strand at 175.624 kb on + strand at 175.624 kb on + strand at 175.643 kb on + strand at 175.773 kb on + strand, within ABIE40_RS20350 at 175.774 kb on - strand, within ABIE40_RS20350 at 175.887 kb on + strand, within ABIE40_RS20350 at 175.888 kb on - strand, within ABIE40_RS20350 at 175.888 kb on - strand, within ABIE40_RS20350 at 175.938 kb on + strand, within ABIE40_RS20350 at 175.938 kb on + strand, within ABIE40_RS20350 at 175.938 kb on + strand, within ABIE40_RS20350 at 175.939 kb on - strand, within ABIE40_RS20350 at 175.939 kb on - strand, within ABIE40_RS20350 at 175.939 kb on - strand, within ABIE40_RS20350 at 175.939 kb on - strand, within ABIE40_RS20350 at 175.939 kb on - strand, within ABIE40_RS20350 at 175.939 kb on - strand, within ABIE40_RS20350 at 176.175 kb on + strand, within ABIE40_RS20350 at 176.175 kb on + strand, within ABIE40_RS20350 at 176.205 kb on + strand, within ABIE40_RS20350 at 176.206 kb on - strand, within ABIE40_RS20350 at 176.226 kb on + strand, within ABIE40_RS20350 at 176.226 kb on + strand, within ABIE40_RS20350 at 176.226 kb on + strand, within ABIE40_RS20350 at 176.226 kb on + strand, within ABIE40_RS20350 at 176.226 kb on + strand, within ABIE40_RS20350 at 176.226 kb on + strand, within ABIE40_RS20350 at 176.227 kb on - strand, within ABIE40_RS20350 at 176.228 kb on + strand, within ABIE40_RS20350 at 176.229 kb on - strand, within ABIE40_RS20350 at 176.243 kb on - strand, within ABIE40_RS20350 at 176.243 kb on - strand, within ABIE40_RS20350
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 173,245 - -1.0 173,245 - +0.3 173,344 + +0.4 173,353 + +1.1 173,442 + +1.7 173,442 + +2.3 173,442 + +1.7 173,442 + +2.1 173,443 - +0.2 173,443 - +2.2 173,443 - +1.5 173,443 - +2.6 173,820 + ABIE40_RS20340 0.60 +1.8 173,820 + ABIE40_RS20340 0.60 +1.4 173,821 - ABIE40_RS20340 0.60 +1.6 173,821 - ABIE40_RS20340 0.60 +2.3 173,988 + ABIE40_RS20340 0.83 +1.9 173,988 + ABIE40_RS20340 0.83 +2.3 173,988 + ABIE40_RS20340 0.83 +1.6 173,989 - ABIE40_RS20340 0.83 +1.7 174,109 + +1.8 174,109 + +3.8 174,141 + -0.8 174,142 - -0.5 174,335 + ABIE40_RS20345 0.12 -0.7 174,335 + ABIE40_RS20345 0.12 -5.2 174,336 - ABIE40_RS20345 0.12 -4.3 174,512 + ABIE40_RS20345 0.25 -4.2 174,828 + ABIE40_RS20345 0.49 -4.3 174,828 + ABIE40_RS20345 0.49 -4.8 174,829 - ABIE40_RS20345 0.49 -1.6 174,829 - ABIE40_RS20345 0.49 -2.3 174,933 + ABIE40_RS20345 0.57 -1.1 175,043 + ABIE40_RS20345 0.65 -4.3 175,044 - ABIE40_RS20345 0.65 -4.2 175,044 - ABIE40_RS20345 0.65 -3.5 175,044 - ABIE40_RS20345 0.65 -2.5 175,044 - ABIE40_RS20345 0.65 -4.9 175,044 - ABIE40_RS20345 0.65 -5.2 175,045 + ABIE40_RS20345 0.65 -4.9 175,127 + ABIE40_RS20345 0.71 -5.0 175,157 + ABIE40_RS20345 0.73 -5.3 175,158 - ABIE40_RS20345 0.73 -5.1 175,205 + ABIE40_RS20345 0.77 -4.3 175,205 + ABIE40_RS20345 0.77 -3.0 175,205 + ABIE40_RS20345 0.77 -3.6 175,205 + ABIE40_RS20345 0.77 -2.9 175,206 - ABIE40_RS20345 0.77 -5.7 175,206 - ABIE40_RS20345 0.77 -2.3 175,206 - ABIE40_RS20345 0.77 -4.0 175,206 - ABIE40_RS20345 0.77 -3.6 175,262 + ABIE40_RS20345 0.81 -3.1 175,263 - ABIE40_RS20345 0.81 -5.1 175,263 - ABIE40_RS20345 0.81 -5.7 175,263 - ABIE40_RS20345 0.81 -2.9 175,263 - ABIE40_RS20345 0.81 -4.8 175,263 - ABIE40_RS20345 0.81 -4.2 175,263 - ABIE40_RS20345 0.81 -4.9 175,594 + -3.5 175,595 - -3.3 175,599 - -4.4 175,612 + -4.2 175,612 + -1.6 175,613 - -3.5 175,613 - -5.3 175,613 - -1.5 175,624 + +0.9 175,624 + -5.1 175,624 + -2.1 175,643 + -3.2 175,773 + ABIE40_RS20350 0.11 -3.1 175,774 - ABIE40_RS20350 0.11 -2.4 175,887 + ABIE40_RS20350 0.20 -1.1 175,888 - ABIE40_RS20350 0.20 -0.9 175,888 - ABIE40_RS20350 0.20 -2.1 175,938 + ABIE40_RS20350 0.24 -4.1 175,938 + ABIE40_RS20350 0.24 -4.0 175,938 + ABIE40_RS20350 0.24 -5.5 175,939 - ABIE40_RS20350 0.25 -3.0 175,939 - ABIE40_RS20350 0.25 -2.4 175,939 - ABIE40_RS20350 0.25 -2.4 175,939 - ABIE40_RS20350 0.25 -3.5 175,939 - ABIE40_RS20350 0.25 -3.0 175,939 - ABIE40_RS20350 0.25 -3.1 176,175 + ABIE40_RS20350 0.43 -4.3 176,175 + ABIE40_RS20350 0.43 -4.7 176,205 + ABIE40_RS20350 0.46 -2.0 176,206 - ABIE40_RS20350 0.46 -3.9 176,226 + ABIE40_RS20350 0.47 -1.7 176,226 + ABIE40_RS20350 0.47 +0.9 176,226 + ABIE40_RS20350 0.47 -4.3 176,226 + ABIE40_RS20350 0.47 -3.6 176,226 + ABIE40_RS20350 0.47 -1.7 176,226 + ABIE40_RS20350 0.47 -2.7 176,227 - ABIE40_RS20350 0.48 -5.1 176,228 + ABIE40_RS20350 0.48 -3.8 176,229 - ABIE40_RS20350 0.48 -2.9 176,243 - ABIE40_RS20350 0.49 -4.8 176,243 - ABIE40_RS20350 0.49 -4.9
Or see this region's nucleotide sequence