Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01570

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01565 and ABIE40_RS01570 overlap by 4 nucleotidesABIE40_RS01570 and ABIE40_RS01575 are separated by 25 nucleotides ABIE40_RS01565: ABIE40_RS01565 - Zn-dependent hydrolase, at 307,256 to 308,518 _RS01565 ABIE40_RS01570: ABIE40_RS01570 - amidohydrolase family protein, at 308,515 to 309,897 _RS01570 ABIE40_RS01575: ABIE40_RS01575 - aromatic amino acid lyase, at 309,923 to 311,506 _RS01575 Position (kb) 308 309 310Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 307.530 kb on + strand, within ABIE40_RS01565at 307.530 kb on + strand, within ABIE40_RS01565at 307.531 kb on - strand, within ABIE40_RS01565at 307.531 kb on - strand, within ABIE40_RS01565at 307.583 kb on + strand, within ABIE40_RS01565at 307.584 kb on - strand, within ABIE40_RS01565at 307.834 kb on + strand, within ABIE40_RS01565at 307.834 kb on + strand, within ABIE40_RS01565at 307.834 kb on + strand, within ABIE40_RS01565at 308.309 kb on - strand, within ABIE40_RS01565at 308.388 kb on + strand, within ABIE40_RS01565at 308.388 kb on + strand, within ABIE40_RS01565at 308.389 kb on - strand, within ABIE40_RS01565at 308.389 kb on - strand, within ABIE40_RS01565at 308.389 kb on - strand, within ABIE40_RS01565at 308.473 kb on + strandat 308.473 kb on + strandat 308.474 kb on - strandat 308.474 kb on - strandat 308.485 kb on + strandat 308.605 kb on + strandat 308.624 kb on + strandat 308.624 kb on + strandat 308.625 kb on - strandat 308.625 kb on - strandat 308.663 kb on + strand, within ABIE40_RS01570at 308.663 kb on + strand, within ABIE40_RS01570at 308.663 kb on + strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.708 kb on + strand, within ABIE40_RS01570at 308.708 kb on + strand, within ABIE40_RS01570at 308.708 kb on + strand, within ABIE40_RS01570at 308.709 kb on - strand, within ABIE40_RS01570at 308.709 kb on - strand, within ABIE40_RS01570at 308.709 kb on - strand, within ABIE40_RS01570at 308.709 kb on - strand, within ABIE40_RS01570at 308.919 kb on + strand, within ABIE40_RS01570at 308.920 kb on - strand, within ABIE40_RS01570at 308.920 kb on - strand, within ABIE40_RS01570at 309.098 kb on + strand, within ABIE40_RS01570at 309.099 kb on - strand, within ABIE40_RS01570at 309.099 kb on - strand, within ABIE40_RS01570at 309.207 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.318 kb on + strand, within ABIE40_RS01570at 309.318 kb on + strand, within ABIE40_RS01570at 309.319 kb on - strand, within ABIE40_RS01570at 309.319 kb on - strand, within ABIE40_RS01570at 309.320 kb on + strand, within ABIE40_RS01570at 309.320 kb on + strand, within ABIE40_RS01570at 309.320 kb on + strand, within ABIE40_RS01570at 309.321 kb on - strand, within ABIE40_RS01570at 309.321 kb on - strand, within ABIE40_RS01570at 309.321 kb on - strand, within ABIE40_RS01570at 309.321 kb on - strand, within ABIE40_RS01570at 309.321 kb on - strand, within ABIE40_RS01570at 309.321 kb on - strand, within ABIE40_RS01570at 309.418 kb on - strand, within ABIE40_RS01570at 309.531 kb on - strand, within ABIE40_RS01570at 309.531 kb on - strand, within ABIE40_RS01570at 309.584 kb on - strand, within ABIE40_RS01570at 309.620 kb on + strand, within ABIE40_RS01570at 309.620 kb on + strand, within ABIE40_RS01570at 309.620 kb on + strand, within ABIE40_RS01570at 309.620 kb on + strand, within ABIE40_RS01570at 309.620 kb on + strand, within ABIE40_RS01570at 309.621 kb on - strand, within ABIE40_RS01570at 309.621 kb on - strand, within ABIE40_RS01570at 309.830 kb on + strandat 309.830 kb on + strandat 309.830 kb on + strandat 309.830 kb on + strandat 309.831 kb on - strandat 309.831 kb on - strandat 310.101 kb on + strand, within ABIE40_RS01575at 310.101 kb on + strand, within ABIE40_RS01575at 310.102 kb on - strand, within ABIE40_RS01575at 310.131 kb on + strand, within ABIE40_RS01575at 310.131 kb on + strand, within ABIE40_RS01575at 310.131 kb on + strand, within ABIE40_RS01575at 310.131 kb on + strand, within ABIE40_RS01575at 310.131 kb on + strand, within ABIE40_RS01575at 310.131 kb on + strand, within ABIE40_RS01575at 310.131 kb on + strand, within ABIE40_RS01575at 310.131 kb on + strand, within ABIE40_RS01575at 310.131 kb on - strand, within ABIE40_RS01575at 310.132 kb on - strand, within ABIE40_RS01575at 310.132 kb on - strand, within ABIE40_RS01575at 310.132 kb on - strand, within ABIE40_RS01575at 310.132 kb on - strand, within ABIE40_RS01575at 310.132 kb on - strand, within ABIE40_RS01575at 310.132 kb on - strand, within ABIE40_RS01575at 310.132 kb on - strand, within ABIE40_RS01575at 310.132 kb on - strand, within ABIE40_RS01575at 310.132 kb on - strand, within ABIE40_RS01575at 310.335 kb on - strand, within ABIE40_RS01575at 310.335 kb on - strand, within ABIE40_RS01575

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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307,530 + ABIE40_RS01565 0.22 -0.6
307,530 + ABIE40_RS01565 0.22 -3.3
307,531 - ABIE40_RS01565 0.22 -2.2
307,531 - ABIE40_RS01565 0.22 -1.4
307,583 + ABIE40_RS01565 0.26 -4.4
307,584 - ABIE40_RS01565 0.26 -3.5
307,834 + ABIE40_RS01565 0.46 -2.5
307,834 + ABIE40_RS01565 0.46 -1.9
307,834 + ABIE40_RS01565 0.46 -3.9
308,309 - ABIE40_RS01565 0.83 -4.4
308,388 + ABIE40_RS01565 0.90 -2.4
308,388 + ABIE40_RS01565 0.90 -4.6
308,389 - ABIE40_RS01565 0.90 -3.4
308,389 - ABIE40_RS01565 0.90 -3.2
308,389 - ABIE40_RS01565 0.90 -2.8
308,473 + -4.0
308,473 + -4.9
308,474 - -5.0
308,474 - -1.2
308,485 + -2.7
308,605 + -4.2
308,624 + +1.8
308,624 + -5.7
308,625 - +0.2
308,625 - +1.8
308,663 + ABIE40_RS01570 0.11 -2.0
308,663 + ABIE40_RS01570 0.11 -3.4
308,663 + ABIE40_RS01570 0.11 -3.9
308,664 - ABIE40_RS01570 0.11 +0.7
308,664 - ABIE40_RS01570 0.11 -0.5
308,664 - ABIE40_RS01570 0.11 +2.0
308,664 - ABIE40_RS01570 0.11 -0.9
308,664 - ABIE40_RS01570 0.11 +0.5
308,664 - ABIE40_RS01570 0.11 +0.1
308,664 - ABIE40_RS01570 0.11 +0.5
308,708 + ABIE40_RS01570 0.14 -3.4
308,708 + ABIE40_RS01570 0.14 -4.9
308,708 + ABIE40_RS01570 0.14 -4.1
308,709 - ABIE40_RS01570 0.14 -0.1
308,709 - ABIE40_RS01570 0.14 +1.3
308,709 - ABIE40_RS01570 0.14 +0.7
308,709 - ABIE40_RS01570 0.14 +1.1
308,919 + ABIE40_RS01570 0.29 -0.6
308,920 - ABIE40_RS01570 0.29 -2.4
308,920 - ABIE40_RS01570 0.29 -0.9
309,098 + ABIE40_RS01570 0.42 -4.9
309,099 - ABIE40_RS01570 0.42 -4.1
309,099 - ABIE40_RS01570 0.42 -1.7
309,207 + ABIE40_RS01570 0.50 -0.8
309,231 + ABIE40_RS01570 0.52 -1.0
309,231 + ABIE40_RS01570 0.52 -3.4
309,231 + ABIE40_RS01570 0.52 -2.3
309,231 + ABIE40_RS01570 0.52 -3.3
309,231 + ABIE40_RS01570 0.52 -1.7
309,231 + ABIE40_RS01570 0.52 -3.3
309,231 + ABIE40_RS01570 0.52 -4.6
309,231 + ABIE40_RS01570 0.52 -1.6
309,231 + ABIE40_RS01570 0.52 -4.7
309,231 + ABIE40_RS01570 0.52 -4.1
309,232 - ABIE40_RS01570 0.52 -0.6
309,232 - ABIE40_RS01570 0.52 -1.4
309,232 - ABIE40_RS01570 0.52 -2.9
309,232 - ABIE40_RS01570 0.52 -3.3
309,232 - ABIE40_RS01570 0.52 -5.2
309,232 - ABIE40_RS01570 0.52 -5.0
309,232 - ABIE40_RS01570 0.52 -2.4
309,318 + ABIE40_RS01570 0.58 -1.0
309,318 + ABIE40_RS01570 0.58 -1.4
309,319 - ABIE40_RS01570 0.58 -3.7
309,319 - ABIE40_RS01570 0.58 -4.1
309,320 + ABIE40_RS01570 0.58 -3.4
309,320 + ABIE40_RS01570 0.58 -3.6
309,320 + ABIE40_RS01570 0.58 -3.5
309,321 - ABIE40_RS01570 0.58 -3.8
309,321 - ABIE40_RS01570 0.58 -3.8
309,321 - ABIE40_RS01570 0.58 -2.0
309,321 - ABIE40_RS01570 0.58 -1.0
309,321 - ABIE40_RS01570 0.58 -2.6
309,321 - ABIE40_RS01570 0.58 -3.7
309,418 - ABIE40_RS01570 0.65 -2.6
309,531 - ABIE40_RS01570 0.73 +1.2
309,531 - ABIE40_RS01570 0.73 -5.1
309,584 - ABIE40_RS01570 0.77 -3.8
309,620 + ABIE40_RS01570 0.80 -1.6
309,620 + ABIE40_RS01570 0.80 -0.6
309,620 + ABIE40_RS01570 0.80 -4.4
309,620 + ABIE40_RS01570 0.80 -1.9
309,620 + ABIE40_RS01570 0.80 -3.3
309,621 - ABIE40_RS01570 0.80 -3.6
309,621 - ABIE40_RS01570 0.80 -4.4
309,830 + -2.5
309,830 + -4.6
309,830 + -4.3
309,830 + -5.1
309,831 - -3.9
309,831 - -1.0
310,101 + ABIE40_RS01575 0.11 -1.7
310,101 + ABIE40_RS01575 0.11 -2.8
310,102 - ABIE40_RS01575 0.11 +1.8
310,131 + ABIE40_RS01575 0.13 -2.8
310,131 + ABIE40_RS01575 0.13 -3.3
310,131 + ABIE40_RS01575 0.13 -2.0
310,131 + ABIE40_RS01575 0.13 -5.4
310,131 + ABIE40_RS01575 0.13 -6.2
310,131 + ABIE40_RS01575 0.13 -4.6
310,131 + ABIE40_RS01575 0.13 -4.9
310,131 + ABIE40_RS01575 0.13 -3.4
310,131 - ABIE40_RS01575 0.13 +0.1
310,132 - ABIE40_RS01575 0.13 +0.1
310,132 - ABIE40_RS01575 0.13 -1.6
310,132 - ABIE40_RS01575 0.13 -0.4
310,132 - ABIE40_RS01575 0.13 +2.4
310,132 - ABIE40_RS01575 0.13 +1.5
310,132 - ABIE40_RS01575 0.13 -0.4
310,132 - ABIE40_RS01575 0.13 -1.4
310,132 - ABIE40_RS01575 0.13 -1.5
310,132 - ABIE40_RS01575 0.13 -2.1
310,335 - ABIE40_RS01575 0.26 +0.2
310,335 - ABIE40_RS01575 0.26 +1.4

Or see this region's nucleotide sequence