Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0505

Experiment: KB with Berberine 15.6 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0504 and Psyr_0505 are separated by 22 nucleotidesPsyr_0505 and Psyr_0506 are separated by 270 nucleotides Psyr_0504: Psyr_0504 - conserved domain protein, at 552,941 to 555,589 _0504 Psyr_0505: Psyr_0505 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region, at 555,612 to 557,414 _0505 Psyr_0506: Psyr_0506 - L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase, at 557,685 to 561,587 _0506 Position (kb) 555 556 557 558Strain fitness (log2 ratio) -2 -1 0 1 2at 554.627 kb on - strand, within Psyr_0504at 554.678 kb on + strand, within Psyr_0504at 554.679 kb on - strand, within Psyr_0504at 554.688 kb on + strand, within Psyr_0504at 554.688 kb on + strand, within Psyr_0504at 554.688 kb on + strand, within Psyr_0504at 554.688 kb on + strand, within Psyr_0504at 554.688 kb on + strand, within Psyr_0504at 554.689 kb on - strand, within Psyr_0504at 554.689 kb on - strand, within Psyr_0504at 554.689 kb on - strand, within Psyr_0504at 554.689 kb on - strand, within Psyr_0504at 554.689 kb on - strand, within Psyr_0504at 554.847 kb on + strand, within Psyr_0504at 554.847 kb on + strand, within Psyr_0504at 554.847 kb on + strand, within Psyr_0504at 554.847 kb on + strand, within Psyr_0504at 554.848 kb on - strand, within Psyr_0504at 554.848 kb on - strand, within Psyr_0504at 554.848 kb on - strand, within Psyr_0504at 554.848 kb on - strand, within Psyr_0504at 554.848 kb on - strand, within Psyr_0504at 554.848 kb on - strand, within Psyr_0504at 554.849 kb on + strand, within Psyr_0504at 554.849 kb on + strand, within Psyr_0504at 554.850 kb on - strand, within Psyr_0504at 554.850 kb on - strand, within Psyr_0504at 554.850 kb on - strand, within Psyr_0504at 554.850 kb on - strand, within Psyr_0504at 554.850 kb on - strand, within Psyr_0504at 554.850 kb on - strand, within Psyr_0504at 554.903 kb on + strand, within Psyr_0504at 554.903 kb on + strand, within Psyr_0504at 554.927 kb on + strand, within Psyr_0504at 554.927 kb on + strand, within Psyr_0504at 554.927 kb on + strand, within Psyr_0504at 554.928 kb on - strand, within Psyr_0504at 554.928 kb on - strand, within Psyr_0504at 554.928 kb on - strand, within Psyr_0504at 554.928 kb on - strand, within Psyr_0504at 554.928 kb on - strand, within Psyr_0504at 554.928 kb on - strand, within Psyr_0504at 554.930 kb on - strand, within Psyr_0504at 555.039 kb on - strand, within Psyr_0504at 555.060 kb on - strand, within Psyr_0504at 555.060 kb on - strand, within Psyr_0504at 555.142 kb on + strand, within Psyr_0504at 555.173 kb on + strand, within Psyr_0504at 555.174 kb on - strand, within Psyr_0504at 555.359 kb on + strandat 555.359 kb on + strandat 555.359 kb on + strandat 555.360 kb on - strandat 555.360 kb on - strandat 555.509 kb on - strandat 555.509 kb on - strandat 555.841 kb on + strand, within Psyr_0505at 555.841 kb on + strand, within Psyr_0505at 556.121 kb on - strand, within Psyr_0505at 556.121 kb on - strand, within Psyr_0505at 556.150 kb on + strand, within Psyr_0505at 556.315 kb on + strand, within Psyr_0505at 556.315 kb on + strand, within Psyr_0505at 556.341 kb on + strand, within Psyr_0505at 556.342 kb on - strand, within Psyr_0505at 556.345 kb on + strand, within Psyr_0505at 556.345 kb on + strand, within Psyr_0505at 556.345 kb on + strand, within Psyr_0505at 556.345 kb on + strand, within Psyr_0505at 556.346 kb on - strand, within Psyr_0505at 556.346 kb on - strand, within Psyr_0505at 556.460 kb on - strand, within Psyr_0505at 556.478 kb on - strand, within Psyr_0505at 556.549 kb on + strand, within Psyr_0505at 556.549 kb on + strand, within Psyr_0505at 556.550 kb on - strand, within Psyr_0505at 556.550 kb on - strand, within Psyr_0505at 556.550 kb on - strand, within Psyr_0505at 556.631 kb on + strand, within Psyr_0505at 556.793 kb on + strand, within Psyr_0505at 556.830 kb on + strand, within Psyr_0505at 556.830 kb on + strand, within Psyr_0505at 556.830 kb on + strand, within Psyr_0505at 556.830 kb on + strand, within Psyr_0505at 556.831 kb on - strand, within Psyr_0505at 556.831 kb on - strand, within Psyr_0505at 556.831 kb on - strand, within Psyr_0505at 556.852 kb on + strand, within Psyr_0505at 556.856 kb on + strand, within Psyr_0505at 556.857 kb on - strand, within Psyr_0505at 556.857 kb on - strand, within Psyr_0505at 557.099 kb on + strand, within Psyr_0505at 557.099 kb on + strand, within Psyr_0505at 557.100 kb on - strand, within Psyr_0505at 557.100 kb on - strand, within Psyr_0505at 557.100 kb on - strand, within Psyr_0505at 557.159 kb on + strand, within Psyr_0505at 557.215 kb on + strand, within Psyr_0505at 557.261 kb on - strandat 557.261 kb on - strandat 557.368 kb on + strandat 557.369 kb on - strandat 557.369 kb on - strandat 557.369 kb on - strandat 557.369 kb on - strandat 557.423 kb on - strandat 557.423 kb on - strandat 557.423 kb on - strandat 557.449 kb on - strandat 557.573 kb on - strandat 557.772 kb on + strandat 557.772 kb on + strandat 557.772 kb on + strandat 557.853 kb on + strandat 557.853 kb on + strandat 557.853 kb on + strandat 557.853 kb on + strandat 557.853 kb on + strandat 557.853 kb on + strandat 557.854 kb on - strandat 557.854 kb on - strandat 557.854 kb on - strandat 557.854 kb on - strandat 557.854 kb on - strandat 557.854 kb on - strandat 557.854 kb on - strandat 557.920 kb on - strandat 558.069 kb on + strandat 558.069 kb on + strandat 558.069 kb on + strandat 558.069 kb on + strandat 558.070 kb on - strandat 558.070 kb on - strandat 558.070 kb on - strandat 558.070 kb on - strandat 558.070 kb on - strandat 558.303 kb on - strand, within Psyr_0506at 558.340 kb on + strand, within Psyr_0506at 558.340 kb on + strand, within Psyr_0506at 558.340 kb on + strand, within Psyr_0506at 558.340 kb on + strand, within Psyr_0506at 558.341 kb on - strand, within Psyr_0506

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 15.6 ug/ml
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554,627 - Psyr_0504 0.64 +0.1
554,678 + Psyr_0504 0.66 -0.5
554,679 - Psyr_0504 0.66 -1.1
554,688 + Psyr_0504 0.66 +0.1
554,688 + Psyr_0504 0.66 +1.9
554,688 + Psyr_0504 0.66 +1.6
554,688 + Psyr_0504 0.66 +0.4
554,688 + Psyr_0504 0.66 +0.6
554,689 - Psyr_0504 0.66 -0.1
554,689 - Psyr_0504 0.66 +0.7
554,689 - Psyr_0504 0.66 -0.1
554,689 - Psyr_0504 0.66 -0.2
554,689 - Psyr_0504 0.66 -0.5
554,847 + Psyr_0504 0.72 -0.5
554,847 + Psyr_0504 0.72 -0.0
554,847 + Psyr_0504 0.72 -0.0
554,847 + Psyr_0504 0.72 +1.5
554,848 - Psyr_0504 0.72 +0.5
554,848 - Psyr_0504 0.72 -0.5
554,848 - Psyr_0504 0.72 -0.8
554,848 - Psyr_0504 0.72 -0.6
554,848 - Psyr_0504 0.72 +0.3
554,848 - Psyr_0504 0.72 -0.0
554,849 + Psyr_0504 0.72 -0.3
554,849 + Psyr_0504 0.72 +0.2
554,850 - Psyr_0504 0.72 +1.1
554,850 - Psyr_0504 0.72 +0.4
554,850 - Psyr_0504 0.72 -0.0
554,850 - Psyr_0504 0.72 +0.5
554,850 - Psyr_0504 0.72 -1.0
554,850 - Psyr_0504 0.72 -0.9
554,903 + Psyr_0504 0.74 +0.8
554,903 + Psyr_0504 0.74 +0.3
554,927 + Psyr_0504 0.75 -0.4
554,927 + Psyr_0504 0.75 -0.4
554,927 + Psyr_0504 0.75 -0.1
554,928 - Psyr_0504 0.75 -0.6
554,928 - Psyr_0504 0.75 -0.3
554,928 - Psyr_0504 0.75 +0.1
554,928 - Psyr_0504 0.75 -0.5
554,928 - Psyr_0504 0.75 -0.9
554,928 - Psyr_0504 0.75 -0.4
554,930 - Psyr_0504 0.75 +0.6
555,039 - Psyr_0504 0.79 +1.1
555,060 - Psyr_0504 0.80 -0.3
555,060 - Psyr_0504 0.80 -1.3
555,142 + Psyr_0504 0.83 +0.1
555,173 + Psyr_0504 0.84 -0.2
555,174 - Psyr_0504 0.84 +0.2
555,359 + -0.9
555,359 + -0.6
555,359 + +0.9
555,360 - -0.7
555,360 - +0.2
555,509 - +0.4
555,509 - -0.3
555,841 + Psyr_0505 0.13 -0.6
555,841 + Psyr_0505 0.13 -0.6
556,121 - Psyr_0505 0.28 -0.1
556,121 - Psyr_0505 0.28 -0.8
556,150 + Psyr_0505 0.30 +0.3
556,315 + Psyr_0505 0.39 -0.8
556,315 + Psyr_0505 0.39 -0.9
556,341 + Psyr_0505 0.40 -0.0
556,342 - Psyr_0505 0.40 -0.8
556,345 + Psyr_0505 0.41 +0.2
556,345 + Psyr_0505 0.41 -0.5
556,345 + Psyr_0505 0.41 +0.1
556,345 + Psyr_0505 0.41 -0.0
556,346 - Psyr_0505 0.41 +1.9
556,346 - Psyr_0505 0.41 -0.3
556,460 - Psyr_0505 0.47 +1.1
556,478 - Psyr_0505 0.48 -0.1
556,549 + Psyr_0505 0.52 +0.6
556,549 + Psyr_0505 0.52 +0.1
556,550 - Psyr_0505 0.52 -1.4
556,550 - Psyr_0505 0.52 -1.5
556,550 - Psyr_0505 0.52 +0.8
556,631 + Psyr_0505 0.57 +0.5
556,793 + Psyr_0505 0.66 -1.4
556,830 + Psyr_0505 0.68 -0.4
556,830 + Psyr_0505 0.68 +1.6
556,830 + Psyr_0505 0.68 -0.6
556,830 + Psyr_0505 0.68 +0.3
556,831 - Psyr_0505 0.68 +0.5
556,831 - Psyr_0505 0.68 +0.3
556,831 - Psyr_0505 0.68 -0.5
556,852 + Psyr_0505 0.69 -2.7
556,856 + Psyr_0505 0.69 +1.1
556,857 - Psyr_0505 0.69 +0.9
556,857 - Psyr_0505 0.69 +2.4
557,099 + Psyr_0505 0.82 +1.1
557,099 + Psyr_0505 0.82 +0.1
557,100 - Psyr_0505 0.83 +1.1
557,100 - Psyr_0505 0.83 -0.2
557,100 - Psyr_0505 0.83 -0.9
557,159 + Psyr_0505 0.86 +0.2
557,215 + Psyr_0505 0.89 -0.5
557,261 - -1.8
557,261 - -2.1
557,368 + -0.4
557,369 - +0.2
557,369 - -0.7
557,369 - +0.5
557,369 - +0.7
557,423 - +0.7
557,423 - -1.4
557,423 - +1.2
557,449 - +0.5
557,573 - +0.2
557,772 + -0.3
557,772 + -0.4
557,772 + +0.2
557,853 + -0.0
557,853 + -0.7
557,853 + -1.9
557,853 + -0.2
557,853 + +0.0
557,853 + +0.6
557,854 - -0.1
557,854 - -1.1
557,854 - +0.2
557,854 - +0.1
557,854 - -2.0
557,854 - -1.8
557,854 - -0.9
557,920 - +0.2
558,069 + -1.4
558,069 + -2.3
558,069 + +0.3
558,069 + -0.6
558,070 - +0.1
558,070 - -0.2
558,070 - -1.3
558,070 - -0.5
558,070 - +1.1
558,303 - Psyr_0506 0.16 -1.4
558,340 + Psyr_0506 0.17 -1.6
558,340 + Psyr_0506 0.17 -0.5
558,340 + Psyr_0506 0.17 -0.7
558,340 + Psyr_0506 0.17 -1.6
558,341 - Psyr_0506 0.17 -0.0

Or see this region's nucleotide sequence