Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24815 and PFLU_RS24820 are separated by 29 nucleotides PFLU_RS24820 and PFLU_RS24825 are separated by 91 nucleotides PFLU_RS24825 and PFLU_RS24830 are separated by 14 nucleotides PFLU_RS24830 and PFLU_RS24835 are separated by 3 nucleotides
PFLU_RS24815: PFLU_RS24815 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 5,560,577 to 5,561,725
_RS24815
PFLU_RS24820: PFLU_RS24820 - nucleoside-diphosphate kinase, at 5,561,755 to 5,562,180
_RS24820
PFLU_RS24825: PFLU_RS24825 - Fe-S cluster assembly protein IscX, at 5,562,272 to 5,562,472
_RS24825
PFLU_RS24830: PFLU_RS24830 - ISC system 2Fe-2S type ferredoxin, at 5,562,487 to 5,562,828
_RS24830
PFLU_RS24835: PFLU_RS24835 - Fe-S protein assembly chaperone HscA, at 5,562,832 to 5,564,694
_RS24835
Position (kb) 5561
5562
5563 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5560.921 kb on - strand, within PFLU_RS24815 at 5560.921 kb on - strand, within PFLU_RS24815 at 5560.921 kb on - strand, within PFLU_RS24815 at 5560.921 kb on - strand, within PFLU_RS24815 at 5560.921 kb on - strand, within PFLU_RS24815 at 5560.921 kb on - strand, within PFLU_RS24815 at 5560.921 kb on - strand, within PFLU_RS24815 at 5560.921 kb on - strand, within PFLU_RS24815 at 5560.921 kb on - strand, within PFLU_RS24815 at 5560.961 kb on - strand, within PFLU_RS24815 at 5560.963 kb on - strand, within PFLU_RS24815 at 5560.963 kb on - strand, within PFLU_RS24815 at 5560.963 kb on - strand, within PFLU_RS24815 at 5560.963 kb on - strand, within PFLU_RS24815 at 5560.963 kb on - strand, within PFLU_RS24815 at 5560.963 kb on - strand, within PFLU_RS24815 at 5560.963 kb on - strand, within PFLU_RS24815 at 5560.963 kb on - strand, within PFLU_RS24815 at 5560.963 kb on - strand, within PFLU_RS24815 at 5560.963 kb on - strand, within PFLU_RS24815 at 5560.963 kb on - strand, within PFLU_RS24815 at 5560.963 kb on - strand, within PFLU_RS24815 at 5560.999 kb on - strand, within PFLU_RS24815 at 5561.622 kb on - strand at 5561.745 kb on - strand at 5561.756 kb on + strand at 5561.757 kb on - strand at 5561.768 kb on - strand at 5562.030 kb on - strand, within PFLU_RS24820 at 5562.030 kb on - strand, within PFLU_RS24820 at 5562.030 kb on - strand, within PFLU_RS24820 at 5562.030 kb on - strand, within PFLU_RS24820 at 5562.077 kb on - strand, within PFLU_RS24820 at 5562.229 kb on - strand at 5562.231 kb on - strand at 5562.247 kb on - strand at 5562.253 kb on + strand at 5562.261 kb on + strand at 5562.261 kb on + strand at 5562.262 kb on - strand at 5562.262 kb on - strand at 5562.383 kb on + strand, within PFLU_RS24825 at 5562.383 kb on + strand, within PFLU_RS24825 at 5562.384 kb on - strand, within PFLU_RS24825 at 5562.384 kb on - strand, within PFLU_RS24825 at 5562.399 kb on + strand, within PFLU_RS24825 at 5562.399 kb on + strand, within PFLU_RS24825 at 5562.399 kb on + strand, within PFLU_RS24825 at 5562.400 kb on - strand, within PFLU_RS24825 at 5562.463 kb on + strand at 5562.464 kb on - strand at 5562.464 kb on - strand at 5562.464 kb on - strand at 5562.971 kb on - strand at 5562.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 5,560,921 - PFLU_RS24815 0.30 -0.3 5,560,921 - PFLU_RS24815 0.30 -0.7 5,560,921 - PFLU_RS24815 0.30 -0.2 5,560,921 - PFLU_RS24815 0.30 +0.5 5,560,921 - PFLU_RS24815 0.30 +0.1 5,560,921 - PFLU_RS24815 0.30 +1.4 5,560,921 - PFLU_RS24815 0.30 -1.8 5,560,921 - PFLU_RS24815 0.30 +0.7 5,560,921 - PFLU_RS24815 0.30 -0.3 5,560,961 - PFLU_RS24815 0.33 -0.4 5,560,963 - PFLU_RS24815 0.34 +0.1 5,560,963 - PFLU_RS24815 0.34 +0.5 5,560,963 - PFLU_RS24815 0.34 -0.8 5,560,963 - PFLU_RS24815 0.34 +0.9 5,560,963 - PFLU_RS24815 0.34 -0.3 5,560,963 - PFLU_RS24815 0.34 -0.8 5,560,963 - PFLU_RS24815 0.34 +0.7 5,560,963 - PFLU_RS24815 0.34 +1.2 5,560,963 - PFLU_RS24815 0.34 +0.4 5,560,963 - PFLU_RS24815 0.34 -0.7 5,560,963 - PFLU_RS24815 0.34 +0.2 5,560,963 - PFLU_RS24815 0.34 +0.4 5,560,999 - PFLU_RS24815 0.37 +0.7 5,561,622 - +0.2 5,561,745 - -0.5 5,561,756 + +3.7 5,561,757 - -1.2 5,561,768 - -0.3 5,562,030 - PFLU_RS24820 0.65 -0.8 5,562,030 - PFLU_RS24820 0.65 +0.2 5,562,030 - PFLU_RS24820 0.65 +0.7 5,562,030 - PFLU_RS24820 0.65 -1.1 5,562,077 - PFLU_RS24820 0.76 +0.2 5,562,229 - +0.9 5,562,231 - +0.2 5,562,247 - -0.1 5,562,253 + -0.7 5,562,261 + +1.0 5,562,261 + -0.5 5,562,262 - +1.1 5,562,262 - +1.9 5,562,383 + PFLU_RS24825 0.55 +0.5 5,562,383 + PFLU_RS24825 0.55 -0.5 5,562,384 - PFLU_RS24825 0.56 -1.1 5,562,384 - PFLU_RS24825 0.56 -0.2 5,562,399 + PFLU_RS24825 0.63 -2.0 5,562,399 + PFLU_RS24825 0.63 -0.5 5,562,399 + PFLU_RS24825 0.63 -0.3 5,562,400 - PFLU_RS24825 0.64 -0.8 5,562,463 + +0.3 5,562,464 - +1.2 5,562,464 - -1.2 5,562,464 - +1.0 5,562,971 - +1.7 5,562,971 - +1.7
Or see this region's nucleotide sequence