Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08670

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08655 and PFLU_RS08660 overlap by 4 nucleotidesPFLU_RS08660 and PFLU_RS08665 overlap by 4 nucleotidesPFLU_RS08665 and PFLU_RS08670 are separated by 3 nucleotidesPFLU_RS08670 and PFLU_RS08675 overlap by 4 nucleotidesPFLU_RS08675 and PFLU_RS08680 overlap by 4 nucleotides PFLU_RS08655: PFLU_RS08655 - heme ABC transporter permease, at 1,925,915 to 1,926,670 _RS08655 PFLU_RS08660: PFLU_RS08660 - heme exporter protein CcmD, at 1,926,667 to 1,926,843 _RS08660 PFLU_RS08665: PFLU_RS08665 - cytochrome c maturation protein CcmE, at 1,926,840 to 1,927,295 _RS08665 PFLU_RS08670: PFLU_RS08670 - heme lyase CcmF/NrfE family subunit, at 1,927,299 to 1,929,287 _RS08670 PFLU_RS08675: PFLU_RS08675 - DsbE family thiol:disulfide interchange protein, at 1,929,284 to 1,929,820 _RS08675 PFLU_RS08680: PFLU_RS08680 - cytochrome c-type biogenesis protein CcmH, at 1,929,817 to 1,930,290 _RS08680 PFLU_RS08685: PFLU_RS08685 - c-type cytochrome biogenesis protein CcmI, at 1,930,283 to 1,931,470 _RS08685 Position (kb) 1927 1928 1929 1930Strain fitness (log2 ratio) -1 0 1 2at 1926.332 kb on + strand, within PFLU_RS08655at 1926.333 kb on - strand, within PFLU_RS08655at 1926.333 kb on - strand, within PFLU_RS08655at 1926.440 kb on + strand, within PFLU_RS08655at 1926.554 kb on + strand, within PFLU_RS08655at 1926.555 kb on - strand, within PFLU_RS08655at 1926.718 kb on + strand, within PFLU_RS08660at 1926.718 kb on + strand, within PFLU_RS08660at 1926.718 kb on + strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.733 kb on + strand, within PFLU_RS08660at 1926.951 kb on + strand, within PFLU_RS08665at 1926.951 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.101 kb on + strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.105 kb on - strand, within PFLU_RS08665at 1927.221 kb on + strand, within PFLU_RS08665at 1927.221 kb on + strand, within PFLU_RS08665at 1927.221 kb on + strand, within PFLU_RS08665at 1927.222 kb on - strand, within PFLU_RS08665at 1927.317 kb on - strandat 1927.488 kb on + strandat 1927.488 kb on + strandat 1927.488 kb on + strandat 1927.489 kb on - strandat 1927.489 kb on - strandat 1927.489 kb on - strandat 1927.521 kb on + strand, within PFLU_RS08670at 1927.521 kb on + strand, within PFLU_RS08670at 1927.521 kb on + strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.532 kb on + strand, within PFLU_RS08670at 1927.557 kb on + strand, within PFLU_RS08670at 1927.557 kb on + strand, within PFLU_RS08670at 1927.557 kb on + strand, within PFLU_RS08670at 1927.557 kb on + strand, within PFLU_RS08670at 1927.557 kb on + strand, within PFLU_RS08670at 1927.558 kb on - strand, within PFLU_RS08670at 1927.560 kb on + strand, within PFLU_RS08670at 1927.560 kb on + strand, within PFLU_RS08670at 1927.560 kb on + strand, within PFLU_RS08670at 1927.560 kb on + strand, within PFLU_RS08670at 1927.561 kb on - strand, within PFLU_RS08670at 1927.561 kb on - strand, within PFLU_RS08670at 1927.561 kb on - strand, within PFLU_RS08670at 1927.688 kb on - strand, within PFLU_RS08670at 1927.845 kb on + strand, within PFLU_RS08670at 1927.845 kb on + strand, within PFLU_RS08670at 1927.845 kb on + strand, within PFLU_RS08670at 1927.845 kb on + strand, within PFLU_RS08670at 1927.845 kb on + strand, within PFLU_RS08670at 1927.846 kb on - strand, within PFLU_RS08670at 1927.846 kb on - strand, within PFLU_RS08670at 1927.846 kb on - strand, within PFLU_RS08670at 1927.846 kb on - strand, within PFLU_RS08670at 1927.846 kb on - strand, within PFLU_RS08670at 1927.846 kb on - strand, within PFLU_RS08670at 1927.854 kb on + strand, within PFLU_RS08670at 1927.854 kb on + strand, within PFLU_RS08670at 1927.854 kb on + strand, within PFLU_RS08670at 1927.854 kb on + strand, within PFLU_RS08670at 1928.004 kb on + strand, within PFLU_RS08670at 1928.005 kb on - strand, within PFLU_RS08670at 1928.005 kb on - strand, within PFLU_RS08670at 1928.005 kb on - strand, within PFLU_RS08670at 1928.005 kb on - strand, within PFLU_RS08670at 1928.007 kb on + strand, within PFLU_RS08670at 1928.007 kb on + strand, within PFLU_RS08670at 1928.007 kb on + strand, within PFLU_RS08670at 1928.007 kb on + strand, within PFLU_RS08670at 1928.008 kb on - strand, within PFLU_RS08670at 1928.951 kb on + strand, within PFLU_RS08670at 1928.951 kb on + strand, within PFLU_RS08670at 1928.952 kb on - strand, within PFLU_RS08670at 1929.027 kb on + strand, within PFLU_RS08670at 1929.027 kb on + strand, within PFLU_RS08670at 1929.090 kb on + strandat 1929.090 kb on + strandat 1929.090 kb on + strandat 1929.090 kb on + strandat 1929.090 kb on + strandat 1929.090 kb on + strandat 1929.091 kb on - strandat 1929.091 kb on - strandat 1929.283 kb on + strandat 1929.357 kb on - strand, within PFLU_RS08675at 1929.563 kb on + strand, within PFLU_RS08675at 1929.563 kb on + strand, within PFLU_RS08675at 1929.563 kb on + strand, within PFLU_RS08675at 1929.575 kb on + strand, within PFLU_RS08675at 1929.575 kb on + strand, within PFLU_RS08675at 1929.575 kb on + strand, within PFLU_RS08675at 1929.576 kb on - strand, within PFLU_RS08675at 1929.576 kb on - strand, within PFLU_RS08675at 1929.683 kb on + strand, within PFLU_RS08675at 1929.684 kb on - strand, within PFLU_RS08675at 1929.737 kb on + strand, within PFLU_RS08675at 1929.737 kb on + strand, within PFLU_RS08675at 1929.737 kb on + strand, within PFLU_RS08675at 1929.737 kb on + strand, within PFLU_RS08675at 1929.738 kb on - strand, within PFLU_RS08675at 1929.738 kb on - strand, within PFLU_RS08675at 1929.738 kb on - strand, within PFLU_RS08675at 1929.738 kb on - strand, within PFLU_RS08675at 1929.738 kb on - strand, within PFLU_RS08675at 1929.738 kb on - strand, within PFLU_RS08675at 1929.738 kb on - strand, within PFLU_RS08675at 1929.738 kb on - strand, within PFLU_RS08675at 1929.738 kb on - strand, within PFLU_RS08675at 1929.738 kb on - strand, within PFLU_RS08675at 1929.889 kb on + strand, within PFLU_RS08680at 1929.889 kb on + strand, within PFLU_RS08680at 1929.890 kb on - strand, within PFLU_RS08680at 1929.890 kb on - strand, within PFLU_RS08680

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,926,332 + PFLU_RS08655 0.55 +1.4
1,926,333 - PFLU_RS08655 0.55 +1.4
1,926,333 - PFLU_RS08655 0.55 +1.4
1,926,440 + PFLU_RS08655 0.69 +1.4
1,926,554 + PFLU_RS08655 0.85 +0.4
1,926,555 - PFLU_RS08655 0.85 +0.4
1,926,718 + PFLU_RS08660 0.29 -0.1
1,926,718 + PFLU_RS08660 0.29 +1.4
1,926,718 + PFLU_RS08660 0.29 +1.4
1,926,719 - PFLU_RS08660 0.29 -0.1
1,926,719 - PFLU_RS08660 0.29 +1.4
1,926,719 - PFLU_RS08660 0.29 -0.6
1,926,719 - PFLU_RS08660 0.29 +1.4
1,926,719 - PFLU_RS08660 0.29 +0.4
1,926,719 - PFLU_RS08660 0.29 -0.9
1,926,719 - PFLU_RS08660 0.29 -0.9
1,926,719 - PFLU_RS08660 0.29 -0.1
1,926,719 - PFLU_RS08660 0.29 +1.4
1,926,719 - PFLU_RS08660 0.29 +2.4
1,926,719 - PFLU_RS08660 0.29 +1.4
1,926,733 + PFLU_RS08660 0.37 +0.4
1,926,951 + PFLU_RS08665 0.24 -0.6
1,926,951 + PFLU_RS08665 0.24 +0.4
1,927,100 + PFLU_RS08665 0.57 +1.4
1,927,100 + PFLU_RS08665 0.57 -1.6
1,927,100 + PFLU_RS08665 0.57 +0.4
1,927,100 + PFLU_RS08665 0.57 -0.9
1,927,100 + PFLU_RS08665 0.57 +0.4
1,927,100 + PFLU_RS08665 0.57 -0.1
1,927,101 + PFLU_RS08665 0.57 +0.4
1,927,101 - PFLU_RS08665 0.57 -0.1
1,927,101 - PFLU_RS08665 0.57 -0.1
1,927,101 - PFLU_RS08665 0.57 +1.4
1,927,101 - PFLU_RS08665 0.57 +1.4
1,927,101 - PFLU_RS08665 0.57 -0.6
1,927,101 - PFLU_RS08665 0.57 +0.4
1,927,101 - PFLU_RS08665 0.57 +0.4
1,927,101 - PFLU_RS08665 0.57 -0.1
1,927,105 - PFLU_RS08665 0.58 +0.4
1,927,221 + PFLU_RS08665 0.84 +1.4
1,927,221 + PFLU_RS08665 0.84 -0.6
1,927,221 + PFLU_RS08665 0.84 +1.4
1,927,222 - PFLU_RS08665 0.84 +1.4
1,927,317 - -0.6
1,927,488 + +0.9
1,927,488 + +0.4
1,927,488 + +0.4
1,927,489 - +1.4
1,927,489 - +0.4
1,927,489 - +1.4
1,927,521 + PFLU_RS08670 0.11 +0.4
1,927,521 + PFLU_RS08670 0.11 -0.6
1,927,521 + PFLU_RS08670 0.11 +0.4
1,927,522 - PFLU_RS08670 0.11 +0.4
1,927,522 - PFLU_RS08670 0.11 +1.4
1,927,522 - PFLU_RS08670 0.11 +1.4
1,927,522 - PFLU_RS08670 0.11 +1.4
1,927,522 - PFLU_RS08670 0.11 +0.4
1,927,522 - PFLU_RS08670 0.11 -0.1
1,927,532 + PFLU_RS08670 0.12 +0.4
1,927,557 + PFLU_RS08670 0.13 +0.4
1,927,557 + PFLU_RS08670 0.13 +0.4
1,927,557 + PFLU_RS08670 0.13 -0.1
1,927,557 + PFLU_RS08670 0.13 +0.9
1,927,557 + PFLU_RS08670 0.13 -0.1
1,927,558 - PFLU_RS08670 0.13 -0.1
1,927,560 + PFLU_RS08670 0.13 +0.4
1,927,560 + PFLU_RS08670 0.13 -0.6
1,927,560 + PFLU_RS08670 0.13 +0.4
1,927,560 + PFLU_RS08670 0.13 -0.9
1,927,561 - PFLU_RS08670 0.13 +1.4
1,927,561 - PFLU_RS08670 0.13 +0.4
1,927,561 - PFLU_RS08670 0.13 -0.1
1,927,688 - PFLU_RS08670 0.20 +0.4
1,927,845 + PFLU_RS08670 0.27 +1.4
1,927,845 + PFLU_RS08670 0.27 +0.4
1,927,845 + PFLU_RS08670 0.27 +0.4
1,927,845 + PFLU_RS08670 0.27 +0.4
1,927,845 + PFLU_RS08670 0.27 +1.4
1,927,846 - PFLU_RS08670 0.28 +1.4
1,927,846 - PFLU_RS08670 0.28 -0.1
1,927,846 - PFLU_RS08670 0.28 +2.4
1,927,846 - PFLU_RS08670 0.28 +0.4
1,927,846 - PFLU_RS08670 0.28 -0.1
1,927,846 - PFLU_RS08670 0.28 +1.4
1,927,854 + PFLU_RS08670 0.28 -0.1
1,927,854 + PFLU_RS08670 0.28 +1.4
1,927,854 + PFLU_RS08670 0.28 +1.4
1,927,854 + PFLU_RS08670 0.28 +0.4
1,928,004 + PFLU_RS08670 0.35 +0.4
1,928,005 - PFLU_RS08670 0.35 +0.4
1,928,005 - PFLU_RS08670 0.35 +1.4
1,928,005 - PFLU_RS08670 0.35 +0.9
1,928,005 - PFLU_RS08670 0.35 +1.4
1,928,007 + PFLU_RS08670 0.36 +1.4
1,928,007 + PFLU_RS08670 0.36 -0.1
1,928,007 + PFLU_RS08670 0.36 +1.4
1,928,007 + PFLU_RS08670 0.36 -0.6
1,928,008 - PFLU_RS08670 0.36 +2.4
1,928,951 + PFLU_RS08670 0.83 -0.1
1,928,951 + PFLU_RS08670 0.83 +0.4
1,928,952 - PFLU_RS08670 0.83 +1.4
1,929,027 + PFLU_RS08670 0.87 +0.1
1,929,027 + PFLU_RS08670 0.87 +0.4
1,929,090 + -0.6
1,929,090 + +0.4
1,929,090 + +1.4
1,929,090 + -0.9
1,929,090 + +1.4
1,929,090 + -0.3
1,929,091 - +1.4
1,929,091 - +2.4
1,929,283 + -0.4
1,929,357 - PFLU_RS08675 0.14 +0.4
1,929,563 + PFLU_RS08675 0.52 -0.9
1,929,563 + PFLU_RS08675 0.52 +0.4
1,929,563 + PFLU_RS08675 0.52 +0.4
1,929,575 + PFLU_RS08675 0.54 +1.4
1,929,575 + PFLU_RS08675 0.54 +1.4
1,929,575 + PFLU_RS08675 0.54 -0.6
1,929,576 - PFLU_RS08675 0.54 -0.1
1,929,576 - PFLU_RS08675 0.54 +1.4
1,929,683 + PFLU_RS08675 0.74 -1.6
1,929,684 - PFLU_RS08675 0.74 +0.4
1,929,737 + PFLU_RS08675 0.84 +1.4
1,929,737 + PFLU_RS08675 0.84 -0.9
1,929,737 + PFLU_RS08675 0.84 +1.4
1,929,737 + PFLU_RS08675 0.84 +0.4
1,929,738 - PFLU_RS08675 0.85 -0.1
1,929,738 - PFLU_RS08675 0.85 +2.4
1,929,738 - PFLU_RS08675 0.85 -0.1
1,929,738 - PFLU_RS08675 0.85 +0.4
1,929,738 - PFLU_RS08675 0.85 +1.4
1,929,738 - PFLU_RS08675 0.85 +1.4
1,929,738 - PFLU_RS08675 0.85 +0.4
1,929,738 - PFLU_RS08675 0.85 +1.4
1,929,738 - PFLU_RS08675 0.85 +1.4
1,929,738 - PFLU_RS08675 0.85 +0.4
1,929,889 + PFLU_RS08680 0.15 -0.1
1,929,889 + PFLU_RS08680 0.15 +0.4
1,929,890 - PFLU_RS08680 0.15 +1.4
1,929,890 - PFLU_RS08680 0.15 +0.4

Or see this region's nucleotide sequence