Experiment: R2A with Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24225 and CA265_RS24230 are separated by 129 nucleotides CA265_RS24230 and CA265_RS24235 are separated by 471 nucleotides
CA265_RS24225: CA265_RS24225 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 5,899,978 to 5,900,994
_RS24225
CA265_RS24230: CA265_RS24230 - RNA polymerase sigma factor, at 5,901,124 to 5,901,654
_RS24230
CA265_RS24235: CA265_RS24235 - phytoene dehydrogenase, at 5,902,126 to 5,903,607
_RS24235
Position (kb) 5901
5902 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5901.065 kb on - strand at 5901.085 kb on + strand at 5901.110 kb on + strand at 5901.111 kb on - strand at 5901.234 kb on + strand, within CA265_RS24230 at 5901.260 kb on - strand, within CA265_RS24230 at 5901.265 kb on - strand, within CA265_RS24230 at 5901.331 kb on - strand, within CA265_RS24230 at 5901.362 kb on + strand, within CA265_RS24230 at 5901.367 kb on - strand, within CA265_RS24230 at 5901.382 kb on - strand, within CA265_RS24230 at 5901.406 kb on - strand, within CA265_RS24230 at 5901.406 kb on - strand, within CA265_RS24230 at 5901.406 kb on - strand, within CA265_RS24230 at 5901.406 kb on - strand, within CA265_RS24230 at 5901.406 kb on - strand, within CA265_RS24230 at 5901.406 kb on - strand, within CA265_RS24230 at 5901.406 kb on - strand, within CA265_RS24230 at 5901.415 kb on - strand, within CA265_RS24230 at 5901.433 kb on - strand, within CA265_RS24230 at 5901.474 kb on - strand, within CA265_RS24230 at 5901.487 kb on + strand, within CA265_RS24230 at 5901.487 kb on + strand, within CA265_RS24230 at 5901.488 kb on - strand, within CA265_RS24230 at 5901.488 kb on - strand, within CA265_RS24230 at 5901.517 kb on + strand, within CA265_RS24230 at 5901.520 kb on - strand, within CA265_RS24230 at 5901.520 kb on - strand, within CA265_RS24230 at 5901.540 kb on + strand, within CA265_RS24230 at 5901.541 kb on - strand, within CA265_RS24230 at 5901.549 kb on + strand, within CA265_RS24230 at 5901.549 kb on + strand, within CA265_RS24230 at 5901.657 kb on + strand at 5901.774 kb on - strand at 5901.828 kb on + strand at 5901.830 kb on + strand at 5901.849 kb on + strand at 5901.865 kb on - strand at 5901.903 kb on - strand at 5901.915 kb on - strand at 5901.915 kb on - strand at 5901.959 kb on + strand at 5901.960 kb on - strand at 5901.960 kb on - strand at 5901.967 kb on + strand at 5901.968 kb on - strand at 5901.972 kb on + strand at 5901.982 kb on + strand at 5902.056 kb on + strand at 5902.193 kb on - strand at 5902.295 kb on - strand, within CA265_RS24235 at 5902.430 kb on + strand, within CA265_RS24235 at 5902.480 kb on + strand, within CA265_RS24235 at 5902.521 kb on + strand, within CA265_RS24235 at 5902.521 kb on + strand, within CA265_RS24235 at 5902.543 kb on + strand, within CA265_RS24235 at 5902.543 kb on + strand, within CA265_RS24235 at 5902.544 kb on - strand, within CA265_RS24235 at 5902.583 kb on + strand, within CA265_RS24235 at 5902.639 kb on + strand, within CA265_RS24235
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.01 mg/ml remove 5,901,065 - -0.4 5,901,085 + +1.1 5,901,110 + -0.4 5,901,111 - -0.4 5,901,234 + CA265_RS24230 0.21 -0.5 5,901,260 - CA265_RS24230 0.26 -0.8 5,901,265 - CA265_RS24230 0.27 +0.1 5,901,331 - CA265_RS24230 0.39 +0.3 5,901,362 + CA265_RS24230 0.45 +0.0 5,901,367 - CA265_RS24230 0.46 -0.4 5,901,382 - CA265_RS24230 0.49 +0.3 5,901,406 - CA265_RS24230 0.53 -0.2 5,901,406 - CA265_RS24230 0.53 -1.2 5,901,406 - CA265_RS24230 0.53 -1.2 5,901,406 - CA265_RS24230 0.53 -0.8 5,901,406 - CA265_RS24230 0.53 -0.5 5,901,406 - CA265_RS24230 0.53 +0.1 5,901,406 - CA265_RS24230 0.53 -0.6 5,901,415 - CA265_RS24230 0.55 -2.3 5,901,433 - CA265_RS24230 0.58 +0.4 5,901,474 - CA265_RS24230 0.66 -0.3 5,901,487 + CA265_RS24230 0.68 -1.3 5,901,487 + CA265_RS24230 0.68 -1.0 5,901,488 - CA265_RS24230 0.69 -1.1 5,901,488 - CA265_RS24230 0.69 -0.6 5,901,517 + CA265_RS24230 0.74 -2.0 5,901,520 - CA265_RS24230 0.75 -1.2 5,901,520 - CA265_RS24230 0.75 -1.2 5,901,540 + CA265_RS24230 0.78 -2.4 5,901,541 - CA265_RS24230 0.79 -2.0 5,901,549 + CA265_RS24230 0.80 -2.7 5,901,549 + CA265_RS24230 0.80 -1.3 5,901,657 + +2.2 5,901,774 - +0.5 5,901,828 + -1.8 5,901,830 + +0.7 5,901,849 + -0.8 5,901,865 - +0.4 5,901,903 - -0.1 5,901,915 - -1.1 5,901,915 - -0.1 5,901,959 + -0.0 5,901,960 - -0.3 5,901,960 - -0.5 5,901,967 + +0.1 5,901,968 - +0.5 5,901,972 + -0.5 5,901,982 + -0.6 5,902,056 + +0.0 5,902,193 - -0.1 5,902,295 - CA265_RS24235 0.11 -0.3 5,902,430 + CA265_RS24235 0.21 -1.1 5,902,480 + CA265_RS24235 0.24 -0.0 5,902,521 + CA265_RS24235 0.27 +0.4 5,902,521 + CA265_RS24235 0.27 +1.3 5,902,543 + CA265_RS24235 0.28 -0.1 5,902,543 + CA265_RS24235 0.28 +0.3 5,902,544 - CA265_RS24235 0.28 -0.3 5,902,583 + CA265_RS24235 0.31 +0.5 5,902,639 + CA265_RS24235 0.35 +0.3
Or see this region's nucleotide sequence