Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1788

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1787 and Psyr_1788 are separated by 329 nucleotidesPsyr_1788 and Psyr_1789 are separated by 73 nucleotides Psyr_1787: Psyr_1787 - L-sorbosone dehydrogenase, at 2,037,906 to 2,039,198 _1787 Psyr_1788: Psyr_1788 - Major facilitator superfamily, at 2,039,528 to 2,040,727 _1788 Psyr_1789: Psyr_1789 - chemotaxis sensory transducer, at 2,040,801 to 2,042,441 _1789 Position (kb) 2039 2040 2041Strain fitness (log2 ratio) -2 -1 0 1at 2038.539 kb on + strand, within Psyr_1787at 2038.540 kb on - strand, within Psyr_1787at 2038.562 kb on + strand, within Psyr_1787at 2038.789 kb on - strand, within Psyr_1787at 2038.800 kb on + strand, within Psyr_1787at 2038.806 kb on + strand, within Psyr_1787at 2038.806 kb on + strand, within Psyr_1787at 2038.806 kb on + strand, within Psyr_1787at 2038.807 kb on - strand, within Psyr_1787at 2038.882 kb on - strand, within Psyr_1787at 2039.196 kb on + strandat 2039.197 kb on - strandat 2039.399 kb on + strandat 2039.459 kb on + strandat 2039.746 kb on + strand, within Psyr_1788at 2039.746 kb on + strand, within Psyr_1788at 2039.746 kb on + strand, within Psyr_1788at 2039.963 kb on + strand, within Psyr_1788at 2039.963 kb on + strand, within Psyr_1788at 2039.964 kb on - strand, within Psyr_1788at 2039.964 kb on - strand, within Psyr_1788at 2039.964 kb on - strand, within Psyr_1788at 2039.964 kb on - strand, within Psyr_1788at 2040.206 kb on + strand, within Psyr_1788at 2040.206 kb on + strand, within Psyr_1788at 2040.207 kb on - strand, within Psyr_1788at 2040.207 kb on - strand, within Psyr_1788at 2040.207 kb on - strand, within Psyr_1788at 2040.207 kb on - strand, within Psyr_1788at 2040.207 kb on - strand, within Psyr_1788at 2040.207 kb on - strand, within Psyr_1788at 2040.207 kb on - strand, within Psyr_1788at 2040.228 kb on - strand, within Psyr_1788at 2040.228 kb on - strand, within Psyr_1788at 2040.228 kb on - strand, within Psyr_1788at 2040.233 kb on + strand, within Psyr_1788at 2040.234 kb on - strand, within Psyr_1788at 2040.234 kb on - strand, within Psyr_1788at 2040.234 kb on - strand, within Psyr_1788at 2040.234 kb on - strand, within Psyr_1788at 2040.265 kb on + strand, within Psyr_1788at 2040.654 kb on + strandat 2040.737 kb on - strandat 2041.404 kb on - strand, within Psyr_1789at 2041.633 kb on - strand, within Psyr_1789

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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2,038,539 + Psyr_1787 0.49 +0.2
2,038,540 - Psyr_1787 0.49 +0.7
2,038,562 + Psyr_1787 0.51 +0.2
2,038,789 - Psyr_1787 0.68 -0.1
2,038,800 + Psyr_1787 0.69 -0.6
2,038,806 + Psyr_1787 0.70 -0.2
2,038,806 + Psyr_1787 0.70 +1.0
2,038,806 + Psyr_1787 0.70 -0.3
2,038,807 - Psyr_1787 0.70 -0.3
2,038,882 - Psyr_1787 0.75 +1.7
2,039,196 + +0.9
2,039,197 - +0.9
2,039,399 + +0.2
2,039,459 + -0.1
2,039,746 + Psyr_1788 0.18 +0.3
2,039,746 + Psyr_1788 0.18 +0.9
2,039,746 + Psyr_1788 0.18 +0.9
2,039,963 + Psyr_1788 0.36 +0.6
2,039,963 + Psyr_1788 0.36 -0.7
2,039,964 - Psyr_1788 0.36 +0.3
2,039,964 - Psyr_1788 0.36 +0.6
2,039,964 - Psyr_1788 0.36 +1.7
2,039,964 - Psyr_1788 0.36 +1.1
2,040,206 + Psyr_1788 0.56 +0.1
2,040,206 + Psyr_1788 0.56 +0.2
2,040,207 - Psyr_1788 0.57 -0.2
2,040,207 - Psyr_1788 0.57 +0.9
2,040,207 - Psyr_1788 0.57 -1.8
2,040,207 - Psyr_1788 0.57 +0.2
2,040,207 - Psyr_1788 0.57 -0.1
2,040,207 - Psyr_1788 0.57 -0.5
2,040,207 - Psyr_1788 0.57 -0.9
2,040,228 - Psyr_1788 0.58 +1.5
2,040,228 - Psyr_1788 0.58 +0.2
2,040,228 - Psyr_1788 0.58 +0.7
2,040,233 + Psyr_1788 0.59 +0.2
2,040,234 - Psyr_1788 0.59 +0.8
2,040,234 - Psyr_1788 0.59 +0.8
2,040,234 - Psyr_1788 0.59 +0.3
2,040,234 - Psyr_1788 0.59 +0.2
2,040,265 + Psyr_1788 0.61 -0.1
2,040,654 + -0.6
2,040,737 - -0.3
2,041,404 - Psyr_1789 0.37 +0.8
2,041,633 - Psyr_1789 0.51 -0.2

Or see this region's nucleotide sequence