Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0821

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
926,162	+		Psyr_0820	0.73	+1.3
926,200	+		Psyr_0820	0.77	-0.6
926,201	-		Psyr_0820	0.77	+0.5
926,201	-		Psyr_0820	0.77	+0.2
926,201	-		Psyr_0820	0.77	-0.4
926,246	+		Psyr_0820	0.82	+0.2
926,246	+		Psyr_0820	0.82	-0.5
926,246	+		Psyr_0820	0.82	-0.5
926,247	-		Psyr_0820	0.82	-0.1
926,371	+				-0.3
926,371	+				-1.8
926,371	+				-2.5
926,371	+				+2.5
926,371	+				-0.1
926,381	+				-0.5
926,442	+				+1.9
926,442	+				-2.1
926,442	+				-0.5
926,442	+				-0.3
926,445	+				-0.6
926,445	+				+0.3
926,445	+				-2.5
926,446	-				+0.1
926,450	-				+0.4
926,496	+				+0.2
926,497	-				-0.5
926,497	-				+0.4
926,508	+				+0.3
926,523	+				+0.7
926,523	+				+0.4
926,523	+				-0.2
926,523	+				-1.0
926,524	-				+0.1
926,524	-				-0.7
926,524	-				-1.5
926,524	-				+0.1
926,524	-				-0.4
926,524	-				+0.9
926,532	+				-1.1
926,532	+				-0.1
926,532	+				-0.8
926,532	+				+0.4
926,533	-				+0.3
926,691	-				+0.9
926,734	+				+0.9
926,735	-				+0.2
926,735	-				-0.3
926,735	-				+0.7
926,807	+				+0.3
926,807	+				+1.0
926,807	+				-1.7
926,807	+				-1.8
926,808	-				+0.0
926,808	-				-0.1
926,847	+				+0.9
926,847	+				-0.3
926,847	+				+0.0
926,847	+				-1.0
926,847	+				+0.6
926,848	-				-0.4
926,848	-				+0.9
926,848	-				-0.3
926,848	-				-0.1
926,848	-				-1.5
926,998	-				-0.0
927,061	+				+0.6
927,061	+				-0.7
927,061	+				-0.4
927,194	+		Psyr_0821	0.14	+0.2
927,194	+		Psyr_0821	0.14	-0.3
927,451	+		Psyr_0821	0.23	-1.3
927,451	+		Psyr_0821	0.23	-0.1
927,686	+		Psyr_0821	0.31	-0.5
927,687	-		Psyr_0821	0.32	-0.1
928,152	+		Psyr_0821	0.48	-1.4
928,153	-		Psyr_0821	0.48	+0.1
928,153	-		Psyr_0821	0.48	-0.9
928,429	+		Psyr_0821	0.57	+1.6
928,429	+		Psyr_0821	0.57	-1.1
928,429	+		Psyr_0821	0.57	-0.5
928,429	+		Psyr_0821	0.57	-0.0
928,429	+		Psyr_0821	0.57	-0.8
928,429	+		Psyr_0821	0.57	+0.1
928,429	+		Psyr_0821	0.57	-1.8
928,430	-		Psyr_0821	0.57	-1.1
928,430	-		Psyr_0821	0.57	+0.5
928,430	-		Psyr_0821	0.57	-0.7
928,613	+		Psyr_0821	0.64	-0.2
928,614	-		Psyr_0821	0.64	-1.2
928,682	+		Psyr_0821	0.66	-0.1
928,683	-		Psyr_0821	0.66	-0.1
928,683	-		Psyr_0821	0.66	+3.2
929,320	+		Psyr_0821	0.88	-0.7
929,320	+		Psyr_0821	0.88	-0.9
929,320	+		Psyr_0821	0.88	+1.3
929,320	+		Psyr_0821	0.88	-1.2
929,321	-		Psyr_0821	0.88	-0.2
929,321	-		Psyr_0821	0.88	-0.4
929,321	-		Psyr_0821	0.88	-0.2
929,321	-		Psyr_0821	0.88	+0.8
929,321	-		Psyr_0821	0.88	+1.4
929,321	-		Psyr_0821	0.88	-0.7
929,321	-		Psyr_0821	0.88	-0.4
929,321	-		Psyr_0821	0.88	+0.1
929,650	+				+0.2
929,650	+				-0.2
929,651	-				-0.0
929,782	+		Psyr_0822	0.14	+0.6
929,783	-		Psyr_0822	0.14	-0.8
930,524	+				+0.9
930,571	+				-0.2
930,572	-				+0.0
930,591	+				-0.5
930,591	+				+0.1
930,592	-				-1.5
930,592	-				+0.3
930,592	-				+0.5
930,619	+				-0.1
930,619	+				+1.1
930,619	+				-0.1
930,619	+				+0.0
930,619	+				-1.2
930,619	+				-0.7
930,619	+				-0.9
930,620	-				+0.1
930,620	-				-1.4
930,620	-				+0.4
930,620	-				-0.6