Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03705

Experiment: beta-Cyclodextrin 5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS03710 and HMPREF1058_RS03705 are separated by 418 nucleotidesHMPREF1058_RS03705 and HMPREF1058_RS03700 are separated by 35 nucleotides HMPREF1058_RS03710: HMPREF1058_RS03710 - hypothetical protein, at 209,003 to 209,683 _RS03710 HMPREF1058_RS03705: HMPREF1058_RS03705 - type II restriction endonuclease, at 210,102 to 211,559 _RS03705 HMPREF1058_RS03700: HMPREF1058_RS03700 - DNA cytosine methyltransferase, at 211,595 to 212,761 _RS03700 Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 209.164 kb on + strand, within HMPREF1058_RS03710at 209.184 kb on + strand, within HMPREF1058_RS03710at 209.187 kb on + strand, within HMPREF1058_RS03710at 209.188 kb on - strand, within HMPREF1058_RS03710at 209.191 kb on + strand, within HMPREF1058_RS03710at 209.207 kb on - strand, within HMPREF1058_RS03710at 209.209 kb on + strand, within HMPREF1058_RS03710at 209.209 kb on + strand, within HMPREF1058_RS03710at 209.211 kb on + strand, within HMPREF1058_RS03710at 209.223 kb on + strand, within HMPREF1058_RS03710at 209.224 kb on - strand, within HMPREF1058_RS03710at 209.224 kb on - strand, within HMPREF1058_RS03710at 209.237 kb on - strand, within HMPREF1058_RS03710at 209.242 kb on + strand, within HMPREF1058_RS03710at 209.265 kb on - strand, within HMPREF1058_RS03710at 209.265 kb on - strand, within HMPREF1058_RS03710at 209.287 kb on + strand, within HMPREF1058_RS03710at 209.342 kb on - strand, within HMPREF1058_RS03710at 209.416 kb on + strand, within HMPREF1058_RS03710at 209.508 kb on + strand, within HMPREF1058_RS03710at 209.575 kb on + strand, within HMPREF1058_RS03710at 209.587 kb on - strand, within HMPREF1058_RS03710at 209.616 kb on - strandat 209.744 kb on - strandat 209.763 kb on - strandat 209.802 kb on - strandat 209.802 kb on - strandat 209.828 kb on - strandat 209.907 kb on - strandat 209.907 kb on - strandat 209.934 kb on - strandat 210.027 kb on - strandat 210.078 kb on + strandat 210.078 kb on - strandat 210.082 kb on + strandat 210.089 kb on - strandat 210.101 kb on + strandat 210.138 kb on + strandat 210.168 kb on + strandat 210.169 kb on - strandat 210.179 kb on - strandat 210.184 kb on - strandat 210.199 kb on - strandat 210.222 kb on - strandat 210.290 kb on - strand, within HMPREF1058_RS03705at 210.290 kb on - strand, within HMPREF1058_RS03705at 210.310 kb on - strand, within HMPREF1058_RS03705at 210.381 kb on - strand, within HMPREF1058_RS03705at 210.382 kb on + strand, within HMPREF1058_RS03705at 210.446 kb on - strand, within HMPREF1058_RS03705at 210.461 kb on + strand, within HMPREF1058_RS03705at 210.462 kb on - strand, within HMPREF1058_RS03705at 210.462 kb on - strand, within HMPREF1058_RS03705at 210.498 kb on - strand, within HMPREF1058_RS03705at 210.575 kb on - strand, within HMPREF1058_RS03705at 210.629 kb on + strand, within HMPREF1058_RS03705at 210.724 kb on - strand, within HMPREF1058_RS03705at 210.744 kb on + strand, within HMPREF1058_RS03705at 210.768 kb on + strand, within HMPREF1058_RS03705at 210.829 kb on + strand, within HMPREF1058_RS03705at 210.837 kb on - strand, within HMPREF1058_RS03705at 210.863 kb on + strand, within HMPREF1058_RS03705at 210.863 kb on + strand, within HMPREF1058_RS03705at 210.926 kb on + strand, within HMPREF1058_RS03705at 210.974 kb on - strand, within HMPREF1058_RS03705at 210.977 kb on + strand, within HMPREF1058_RS03705at 210.978 kb on - strand, within HMPREF1058_RS03705at 211.007 kb on + strand, within HMPREF1058_RS03705at 211.007 kb on + strand, within HMPREF1058_RS03705at 211.008 kb on - strand, within HMPREF1058_RS03705at 211.019 kb on + strand, within HMPREF1058_RS03705at 211.019 kb on + strand, within HMPREF1058_RS03705at 211.020 kb on - strand, within HMPREF1058_RS03705at 211.020 kb on - strand, within HMPREF1058_RS03705at 211.020 kb on - strand, within HMPREF1058_RS03705at 211.024 kb on - strand, within HMPREF1058_RS03705at 211.086 kb on - strand, within HMPREF1058_RS03705at 211.109 kb on + strand, within HMPREF1058_RS03705at 211.110 kb on - strand, within HMPREF1058_RS03705at 211.112 kb on - strand, within HMPREF1058_RS03705at 211.182 kb on + strand, within HMPREF1058_RS03705at 211.187 kb on + strand, within HMPREF1058_RS03705at 211.200 kb on - strand, within HMPREF1058_RS03705at 211.232 kb on + strand, within HMPREF1058_RS03705at 211.239 kb on - strand, within HMPREF1058_RS03705at 211.243 kb on + strand, within HMPREF1058_RS03705at 211.244 kb on - strand, within HMPREF1058_RS03705at 211.263 kb on - strand, within HMPREF1058_RS03705at 211.265 kb on + strand, within HMPREF1058_RS03705at 211.266 kb on - strand, within HMPREF1058_RS03705at 211.271 kb on + strand, within HMPREF1058_RS03705at 211.293 kb on + strand, within HMPREF1058_RS03705at 211.293 kb on + strand, within HMPREF1058_RS03705at 211.296 kb on - strand, within HMPREF1058_RS03705at 211.427 kb on - strandat 211.499 kb on + strandat 211.504 kb on - strandat 211.509 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 5 mg/ml (C)
remove
209,164 + HMPREF1058_RS03710 0.24 +1.7
209,184 + HMPREF1058_RS03710 0.27 +0.9
209,187 + HMPREF1058_RS03710 0.27 +2.6
209,188 - HMPREF1058_RS03710 0.27 +1.0
209,191 + HMPREF1058_RS03710 0.28 -0.8
209,207 - HMPREF1058_RS03710 0.30 -1.1
209,209 + HMPREF1058_RS03710 0.30 +0.9
209,209 + HMPREF1058_RS03710 0.30 +1.9
209,211 + HMPREF1058_RS03710 0.31 +0.2
209,223 + HMPREF1058_RS03710 0.32 -0.0
209,224 - HMPREF1058_RS03710 0.32 -0.7
209,224 - HMPREF1058_RS03710 0.32 -0.2
209,237 - HMPREF1058_RS03710 0.34 +1.4
209,242 + HMPREF1058_RS03710 0.35 -0.1
209,265 - HMPREF1058_RS03710 0.38 +0.1
209,265 - HMPREF1058_RS03710 0.38 -0.8
209,287 + HMPREF1058_RS03710 0.42 -0.8
209,342 - HMPREF1058_RS03710 0.50 +0.3
209,416 + HMPREF1058_RS03710 0.61 -0.9
209,508 + HMPREF1058_RS03710 0.74 +1.2
209,575 + HMPREF1058_RS03710 0.84 +0.3
209,587 - HMPREF1058_RS03710 0.86 +1.3
209,616 - +1.0
209,744 - -1.8
209,763 - +1.2
209,802 - +0.3
209,802 - +0.2
209,828 - -1.1
209,907 - -0.6
209,907 - -2.4
209,934 - -0.4
210,027 - +0.3
210,078 + +1.4
210,078 - +1.0
210,082 + +0.3
210,089 - -1.8
210,101 + +0.9
210,138 + -1.0
210,168 + +1.0
210,169 - +1.1
210,179 - -2.6
210,184 - +2.8
210,199 - +0.8
210,222 - +3.8
210,290 - HMPREF1058_RS03705 0.13 -0.1
210,290 - HMPREF1058_RS03705 0.13 -0.4
210,310 - HMPREF1058_RS03705 0.14 +3.4
210,381 - HMPREF1058_RS03705 0.19 +0.4
210,382 + HMPREF1058_RS03705 0.19 +0.7
210,446 - HMPREF1058_RS03705 0.24 +0.0
210,461 + HMPREF1058_RS03705 0.25 -1.8
210,462 - HMPREF1058_RS03705 0.25 -0.8
210,462 - HMPREF1058_RS03705 0.25 -0.3
210,498 - HMPREF1058_RS03705 0.27 -1.0
210,575 - HMPREF1058_RS03705 0.32 -1.5
210,629 + HMPREF1058_RS03705 0.36 +0.3
210,724 - HMPREF1058_RS03705 0.43 +0.8
210,744 + HMPREF1058_RS03705 0.44 -0.5
210,768 + HMPREF1058_RS03705 0.46 -2.3
210,829 + HMPREF1058_RS03705 0.50 +0.2
210,837 - HMPREF1058_RS03705 0.50 +1.9
210,863 + HMPREF1058_RS03705 0.52 -0.3
210,863 + HMPREF1058_RS03705 0.52 +1.7
210,926 + HMPREF1058_RS03705 0.57 -0.3
210,974 - HMPREF1058_RS03705 0.60 +0.8
210,977 + HMPREF1058_RS03705 0.60 -0.1
210,978 - HMPREF1058_RS03705 0.60 +0.1
211,007 + HMPREF1058_RS03705 0.62 -0.0
211,007 + HMPREF1058_RS03705 0.62 +1.9
211,008 - HMPREF1058_RS03705 0.62 +0.7
211,019 + HMPREF1058_RS03705 0.63 +1.6
211,019 + HMPREF1058_RS03705 0.63 -1.1
211,020 - HMPREF1058_RS03705 0.63 +1.1
211,020 - HMPREF1058_RS03705 0.63 +0.6
211,020 - HMPREF1058_RS03705 0.63 -0.0
211,024 - HMPREF1058_RS03705 0.63 -0.5
211,086 - HMPREF1058_RS03705 0.67 -1.3
211,109 + HMPREF1058_RS03705 0.69 -0.7
211,110 - HMPREF1058_RS03705 0.69 +0.4
211,112 - HMPREF1058_RS03705 0.69 -0.2
211,182 + HMPREF1058_RS03705 0.74 +0.8
211,187 + HMPREF1058_RS03705 0.74 -0.6
211,200 - HMPREF1058_RS03705 0.75 -0.7
211,232 + HMPREF1058_RS03705 0.78 +2.0
211,239 - HMPREF1058_RS03705 0.78 +0.5
211,243 + HMPREF1058_RS03705 0.78 +0.2
211,244 - HMPREF1058_RS03705 0.78 -1.5
211,263 - HMPREF1058_RS03705 0.80 -0.4
211,265 + HMPREF1058_RS03705 0.80 +1.1
211,266 - HMPREF1058_RS03705 0.80 +0.1
211,271 + HMPREF1058_RS03705 0.80 -0.0
211,293 + HMPREF1058_RS03705 0.82 -0.0
211,293 + HMPREF1058_RS03705 0.82 +2.0
211,296 - HMPREF1058_RS03705 0.82 -2.2
211,427 - +0.1
211,499 + -0.2
211,504 - +0.4
211,509 - -0.4

Or see this region's nucleotide sequence