Experiment: Dimethyl Sulfoxide 4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27590 and PS417_27595 are separated by 2 nucleotides PS417_27595 and PS417_27600 overlap by 4 nucleotides PS417_27600 and PS417_27605 are separated by 58 nucleotides PS417_27605 and PS417_27610 are separated by 103 nucleotides
PS417_27590: PS417_27590 - hypothetical protein, at 5,951,245 to 5,951,961
_27590
PS417_27595: PS417_27595 - recombinase XerC, at 5,951,964 to 5,952,863
_27595
PS417_27600: PS417_27600 - HAD family hydrolase, at 5,952,860 to 5,953,555
_27600
PS417_27605: PS417_27605 - hypothetical protein, at 5,953,614 to 5,953,940
_27605
PS417_27610: PS417_27610 - hypothetical protein, at 5,954,044 to 5,954,469
_27610
Position (kb) 5952
5953
5954 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5951.863 kb on + strand, within PS417_27590 at 5951.863 kb on + strand, within PS417_27590 at 5951.864 kb on - strand, within PS417_27590 at 5951.864 kb on - strand, within PS417_27590 at 5951.864 kb on - strand, within PS417_27590 at 5951.896 kb on + strand at 5951.896 kb on + strand at 5951.897 kb on - strand at 5952.384 kb on + strand, within PS417_27595 at 5952.385 kb on - strand, within PS417_27595 at 5952.463 kb on + strand, within PS417_27595 at 5952.464 kb on - strand, within PS417_27595 at 5952.702 kb on - strand, within PS417_27595 at 5952.813 kb on + strand at 5952.865 kb on + strand at 5952.912 kb on + strand at 5953.137 kb on + strand, within PS417_27600 at 5953.137 kb on + strand, within PS417_27600 at 5953.138 kb on - strand, within PS417_27600 at 5953.138 kb on - strand, within PS417_27600 at 5953.138 kb on - strand at 5953.138 kb on - strand, within PS417_27600 at 5953.138 kb on - strand, within PS417_27600 at 5953.284 kb on - strand, within PS417_27600 at 5953.284 kb on - strand, within PS417_27600 at 5953.418 kb on - strand, within PS417_27600 at 5953.528 kb on - strand at 5953.595 kb on + strand at 5953.619 kb on + strand at 5953.619 kb on + strand at 5953.619 kb on + strand at 5953.620 kb on - strand at 5953.902 kb on + strand, within PS417_27605 at 5953.902 kb on + strand, within PS417_27605 at 5953.902 kb on + strand, within PS417_27605 at 5953.903 kb on - strand, within PS417_27605 at 5953.903 kb on - strand, within PS417_27605 at 5953.903 kb on - strand, within PS417_27605 at 5953.903 kb on - strand, within PS417_27605 at 5953.903 kb on - strand, within PS417_27605 at 5953.903 kb on - strand, within PS417_27605 at 5953.945 kb on + strand at 5953.945 kb on + strand at 5953.945 kb on + strand at 5953.946 kb on - strand at 5953.946 kb on - strand at 5953.971 kb on + strand at 5953.971 kb on + strand at 5953.971 kb on + strand at 5953.975 kb on + strand at 5953.975 kb on + strand at 5953.977 kb on + strand at 5953.977 kb on + strand at 5953.977 kb on + strand at 5954.045 kb on + strand at 5954.045 kb on + strand at 5954.045 kb on + strand at 5954.045 kb on + strand at 5954.045 kb on + strand at 5954.046 kb on - strand at 5954.079 kb on + strand at 5954.114 kb on + strand, within PS417_27610 at 5954.114 kb on + strand, within PS417_27610 at 5954.273 kb on + strand, within PS417_27610 at 5954.273 kb on + strand, within PS417_27610 at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.470 kb on - strand at 5954.530 kb on + strand at 5954.536 kb on + strand at 5954.536 kb on + strand at 5954.536 kb on + strand at 5954.536 kb on + strand at 5954.546 kb on + strand at 5954.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 4 vol% remove 5,951,863 + PS417_27590 0.86 -0.0 5,951,863 + PS417_27590 0.86 +0.3 5,951,864 - PS417_27590 0.86 +0.0 5,951,864 - PS417_27590 0.86 +0.6 5,951,864 - PS417_27590 0.86 -0.2 5,951,896 + +1.5 5,951,896 + +1.0 5,951,897 - +0.0 5,952,384 + PS417_27595 0.47 +0.0 5,952,385 - PS417_27595 0.47 +0.0 5,952,463 + PS417_27595 0.55 +0.2 5,952,464 - PS417_27595 0.56 +0.6 5,952,702 - PS417_27595 0.82 +0.5 5,952,813 + -0.5 5,952,865 + -0.4 5,952,912 + +0.2 5,953,137 + PS417_27600 0.40 +3.5 5,953,137 + PS417_27600 0.40 +0.7 5,953,138 - PS417_27600 0.40 -0.1 5,953,138 - PS417_27600 0.40 -0.0 5,953,138 - +2.0 5,953,138 - PS417_27600 0.40 +0.0 5,953,138 - PS417_27600 0.40 -0.1 5,953,284 - PS417_27600 0.61 +0.2 5,953,284 - PS417_27600 0.61 +0.1 5,953,418 - PS417_27600 0.80 +0.2 5,953,528 - +0.4 5,953,595 + -0.6 5,953,619 + -2.0 5,953,619 + -0.1 5,953,619 + -2.6 5,953,620 - +0.3 5,953,902 + PS417_27605 0.88 +0.2 5,953,902 + PS417_27605 0.88 +0.6 5,953,902 + PS417_27605 0.88 +0.3 5,953,903 - PS417_27605 0.88 -0.4 5,953,903 - PS417_27605 0.88 -0.2 5,953,903 - PS417_27605 0.88 +0.3 5,953,903 - PS417_27605 0.88 -0.4 5,953,903 - PS417_27605 0.88 +0.0 5,953,903 - PS417_27605 0.88 +0.3 5,953,945 + +0.0 5,953,945 + +0.6 5,953,945 + -0.3 5,953,946 - +0.1 5,953,946 - -0.1 5,953,971 + +0.2 5,953,971 + -0.6 5,953,971 + +0.5 5,953,975 + +0.1 5,953,975 + +0.4 5,953,977 + -0.1 5,953,977 + -0.8 5,953,977 + +0.2 5,954,045 + -0.9 5,954,045 + +0.3 5,954,045 + -0.4 5,954,045 + -0.1 5,954,045 + +0.3 5,954,046 - +0.4 5,954,079 + -0.2 5,954,114 + PS417_27610 0.16 +0.4 5,954,114 + PS417_27610 0.16 -0.0 5,954,273 + PS417_27610 0.54 +0.0 5,954,273 + PS417_27610 0.54 -0.0 5,954,469 + -0.0 5,954,469 + +0.1 5,954,469 + +0.0 5,954,469 + +0.0 5,954,469 + +0.0 5,954,469 + +0.0 5,954,469 + +0.7 5,954,469 + -0.0 5,954,469 + -0.4 5,954,469 + -0.1 5,954,470 - +0.2 5,954,530 + +0.9 5,954,536 + -0.2 5,954,536 + -1.0 5,954,536 + +0.0 5,954,536 + +0.1 5,954,546 + +0.4 5,954,547 - -0.2
Or see this region's nucleotide sequence