Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3256 and EX28DRAFT_3257 are separated by 22 nucleotides EX28DRAFT_3257 and EX28DRAFT_3258 are separated by 82 nucleotides EX28DRAFT_3258 and EX28DRAFT_3259 are separated by 45 nucleotides EX28DRAFT_3259 and EX28DRAFT_3260 overlap by 4 nucleotides EX28DRAFT_3260 and EX28DRAFT_3261 are separated by 39 nucleotides
EX28DRAFT_3256: EX28DRAFT_3256 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 548,139 to 549,572
_3256
EX28DRAFT_3257: EX28DRAFT_3257 - ribosomal subunit interface protein, at 549,595 to 549,882
_3257
EX28DRAFT_3258: EX28DRAFT_3258 - PTS IIA-like nitrogen-regulatory protein PtsN, at 549,965 to 550,456
_3258
EX28DRAFT_3259: EX28DRAFT_3259 - Predicted P-loop-containing kinase, at 550,502 to 551,356
_3259
EX28DRAFT_3260: EX28DRAFT_3260 - Phosphotransferase System HPr (HPr) Family, at 551,353 to 551,625
_3260
EX28DRAFT_3261: EX28DRAFT_3261 - monofunctional biosynthetic peptidoglycan transglycosylase, at 551,665 to 552,390
_3261
Position (kb) 550
551
552 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 549.595 kb on - strand at 549.595 kb on - strand at 549.682 kb on + strand, within EX28DRAFT_3257 at 549.682 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.707 kb on - strand, within EX28DRAFT_3257 at 549.707 kb on - strand, within EX28DRAFT_3257 at 549.708 kb on + strand, within EX28DRAFT_3257 at 549.708 kb on + strand, within EX28DRAFT_3257 at 549.709 kb on - strand, within EX28DRAFT_3257 at 549.738 kb on + strand, within EX28DRAFT_3257 at 549.738 kb on + strand, within EX28DRAFT_3257 at 549.805 kb on + strand, within EX28DRAFT_3257 at 549.805 kb on + strand, within EX28DRAFT_3257 at 549.805 kb on + strand, within EX28DRAFT_3257 at 549.806 kb on - strand, within EX28DRAFT_3257 at 549.806 kb on - strand, within EX28DRAFT_3257 at 549.858 kb on + strand at 549.880 kb on + strand at 549.880 kb on + strand at 549.881 kb on - strand at 549.947 kb on + strand at 550.413 kb on - strand at 550.420 kb on + strand at 550.676 kb on - strand, within EX28DRAFT_3259 at 551.155 kb on + strand, within EX28DRAFT_3259 at 551.215 kb on + strand, within EX28DRAFT_3259 at 551.216 kb on - strand, within EX28DRAFT_3259 at 551.633 kb on + strand at 551.666 kb on + strand at 551.667 kb on - strand at 551.667 kb on - strand at 551.670 kb on + strand at 551.671 kb on - strand at 551.671 kb on - strand at 551.671 kb on - strand at 551.671 kb on - strand at 551.676 kb on + strand at 551.676 kb on + strand at 551.677 kb on - strand at 551.677 kb on - strand at 551.677 kb on - strand at 551.677 kb on - strand at 551.677 kb on - strand at 551.680 kb on - strand at 551.725 kb on - strand at 551.751 kb on - strand, within EX28DRAFT_3261 at 551.751 kb on - strand, within EX28DRAFT_3261 at 551.852 kb on + strand, within EX28DRAFT_3261 at 551.881 kb on + strand, within EX28DRAFT_3261 at 551.912 kb on + strand, within EX28DRAFT_3261 at 552.001 kb on - strand, within EX28DRAFT_3261 at 552.215 kb on + strand, within EX28DRAFT_3261 at 552.295 kb on + strand, within EX28DRAFT_3261 at 552.296 kb on - strand, within EX28DRAFT_3261 at 552.335 kb on - strand at 552.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 549,595 - -0.9 549,595 - -1.7 549,682 + EX28DRAFT_3257 0.30 +0.1 549,682 + EX28DRAFT_3257 0.30 -0.0 549,706 + EX28DRAFT_3257 0.39 +0.2 549,706 + EX28DRAFT_3257 0.39 +1.3 549,706 + EX28DRAFT_3257 0.39 -2.1 549,706 + EX28DRAFT_3257 0.39 +0.2 549,706 + EX28DRAFT_3257 0.39 -0.0 549,707 - EX28DRAFT_3257 0.39 -0.1 549,707 - EX28DRAFT_3257 0.39 -1.6 549,708 + EX28DRAFT_3257 0.39 +0.1 549,708 + EX28DRAFT_3257 0.39 +0.2 549,709 - EX28DRAFT_3257 0.40 +0.6 549,738 + EX28DRAFT_3257 0.50 -1.7 549,738 + EX28DRAFT_3257 0.50 -0.1 549,805 + EX28DRAFT_3257 0.73 -0.1 549,805 + EX28DRAFT_3257 0.73 -0.3 549,805 + EX28DRAFT_3257 0.73 +1.1 549,806 - EX28DRAFT_3257 0.73 -1.3 549,806 - EX28DRAFT_3257 0.73 +1.1 549,858 + +1.5 549,880 + +1.0 549,880 + +0.2 549,881 - -2.6 549,947 + -0.6 550,413 - -1.9 550,420 + -0.7 550,676 - EX28DRAFT_3259 0.20 -4.5 551,155 + EX28DRAFT_3259 0.76 -0.8 551,215 + EX28DRAFT_3259 0.83 -1.4 551,216 - EX28DRAFT_3259 0.84 -1.1 551,633 + -0.0 551,666 + -1.4 551,667 - +1.6 551,667 - +0.5 551,670 + +0.4 551,671 - -0.9 551,671 - -0.1 551,671 - +0.6 551,671 - -0.2 551,676 + -0.2 551,676 + -0.4 551,677 - +0.1 551,677 - -0.2 551,677 - -0.5 551,677 - -0.7 551,677 - +0.6 551,680 - -0.1 551,725 - +0.2 551,751 - EX28DRAFT_3261 0.12 +0.1 551,751 - EX28DRAFT_3261 0.12 -0.1 551,852 + EX28DRAFT_3261 0.26 +3.0 551,881 + EX28DRAFT_3261 0.30 -0.9 551,912 + EX28DRAFT_3261 0.34 +2.1 552,001 - EX28DRAFT_3261 0.46 +0.9 552,215 + EX28DRAFT_3261 0.76 +0.6 552,295 + EX28DRAFT_3261 0.87 +0.2 552,296 - EX28DRAFT_3261 0.87 +0.7 552,335 - -0.8 552,335 - -0.1
Or see this region's nucleotide sequence