Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0935 and EX28DRAFT_0936 overlap by 1 nucleotides EX28DRAFT_0936 and EX28DRAFT_0937 are separated by 23 nucleotides EX28DRAFT_0937 and EX28DRAFT_0938 are separated by 148 nucleotides
EX28DRAFT_0935: EX28DRAFT_0935 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 934,057 to 935,652
_0935
EX28DRAFT_0936: EX28DRAFT_0936 - anthranilate synthase, component I (EC 4.1.3.27), at 935,652 to 937,214
_0936
EX28DRAFT_0937: EX28DRAFT_0937 - RNA, at 937,238 to 937,331
_0937
EX28DRAFT_0938: EX28DRAFT_0938 - Predicted metal-dependent phosphoesterases (PHP family), at 937,480 to 938,373
_0938
Position (kb) 935
936
937
938 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 934.662 kb on + strand, within EX28DRAFT_0935 at 934.674 kb on + strand, within EX28DRAFT_0935 at 934.789 kb on - strand, within EX28DRAFT_0935 at 934.801 kb on - strand, within EX28DRAFT_0935 at 934.828 kb on - strand, within EX28DRAFT_0935 at 935.235 kb on + strand, within EX28DRAFT_0935 at 935.373 kb on - strand, within EX28DRAFT_0935 at 935.565 kb on + strand at 935.565 kb on + strand at 935.609 kb on + strand at 935.610 kb on - strand at 935.626 kb on - strand at 935.681 kb on + strand at 936.038 kb on - strand, within EX28DRAFT_0936 at 936.340 kb on + strand, within EX28DRAFT_0936 at 936.341 kb on - strand, within EX28DRAFT_0936 at 936.374 kb on - strand, within EX28DRAFT_0936 at 936.689 kb on - strand, within EX28DRAFT_0936 at 936.689 kb on - strand, within EX28DRAFT_0936 at 936.698 kb on - strand, within EX28DRAFT_0936 at 936.761 kb on - strand, within EX28DRAFT_0936 at 936.911 kb on + strand, within EX28DRAFT_0936 at 936.911 kb on + strand, within EX28DRAFT_0936 at 937.360 kb on + strand at 937.386 kb on + strand at 937.391 kb on - strand at 937.395 kb on - strand at 937.507 kb on + strand at 937.507 kb on + strand at 937.507 kb on + strand at 937.516 kb on - strand at 937.527 kb on - strand at 937.527 kb on - strand at 937.537 kb on - strand at 937.537 kb on - strand at 937.763 kb on + strand, within EX28DRAFT_0938 at 937.779 kb on + strand, within EX28DRAFT_0938 at 937.780 kb on - strand, within EX28DRAFT_0938 at 937.981 kb on + strand, within EX28DRAFT_0938 at 937.981 kb on + strand, within EX28DRAFT_0938 at 938.006 kb on - strand, within EX28DRAFT_0938 at 938.040 kb on + strand, within EX28DRAFT_0938 at 938.040 kb on + strand, within EX28DRAFT_0938 at 938.041 kb on - strand, within EX28DRAFT_0938 at 938.041 kb on - strand, within EX28DRAFT_0938 at 938.095 kb on + strand, within EX28DRAFT_0938 at 938.097 kb on + strand, within EX28DRAFT_0938 at 938.098 kb on - strand, within EX28DRAFT_0938
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 934,662 + EX28DRAFT_0935 0.38 -1.1 934,674 + EX28DRAFT_0935 0.39 +1.0 934,789 - EX28DRAFT_0935 0.46 +0.3 934,801 - EX28DRAFT_0935 0.47 -1.3 934,828 - EX28DRAFT_0935 0.48 -0.2 935,235 + EX28DRAFT_0935 0.74 +0.8 935,373 - EX28DRAFT_0935 0.82 -1.3 935,565 + -1.7 935,565 + +0.4 935,609 + -0.7 935,610 - -0.9 935,626 - -1.1 935,681 + -0.6 936,038 - EX28DRAFT_0936 0.25 -0.9 936,340 + EX28DRAFT_0936 0.44 -0.5 936,341 - EX28DRAFT_0936 0.44 -0.6 936,374 - EX28DRAFT_0936 0.46 -1.2 936,689 - EX28DRAFT_0936 0.66 -3.6 936,689 - EX28DRAFT_0936 0.66 -2.1 936,698 - EX28DRAFT_0936 0.67 -1.5 936,761 - EX28DRAFT_0936 0.71 -2.6 936,911 + EX28DRAFT_0936 0.81 -1.9 936,911 + EX28DRAFT_0936 0.81 -0.6 937,360 + +0.5 937,386 + -1.2 937,391 - +0.3 937,395 - +0.5 937,507 + -1.2 937,507 + +0.6 937,507 + -0.1 937,516 - +3.3 937,527 - +0.5 937,527 - +0.5 937,537 - +0.6 937,537 - -1.6 937,763 + EX28DRAFT_0938 0.32 -1.7 937,779 + EX28DRAFT_0938 0.33 +1.4 937,780 - EX28DRAFT_0938 0.34 +0.5 937,981 + EX28DRAFT_0938 0.56 +0.4 937,981 + EX28DRAFT_0938 0.56 +1.0 938,006 - EX28DRAFT_0938 0.59 +2.4 938,040 + EX28DRAFT_0938 0.63 -0.1 938,040 + EX28DRAFT_0938 0.63 -0.6 938,041 - EX28DRAFT_0938 0.63 +0.1 938,041 - EX28DRAFT_0938 0.63 -1.8 938,095 + EX28DRAFT_0938 0.69 +0.6 938,097 + EX28DRAFT_0938 0.69 +0.1 938,098 - EX28DRAFT_0938 0.69 -1.0
Or see this region's nucleotide sequence