Experiment: KB with Ampicillin 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0904 and Psyr_0905 are separated by 63 nucleotides Psyr_0905 and Psyr_0906 are separated by 377 nucleotides
Psyr_0904: Psyr_0904 - Short-chain dehydrogenase/reductase SDR, at 1,023,841 to 1,024,605
_0904
Psyr_0905: Psyr_0905 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 1,024,669 to 1,026,591
_0905
Psyr_0906: Psyr_0906 - Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer, at 1,026,969 to 1,028,849
_0906
Position (kb) 1024
1025
1026
1027 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1023.680 kb on - strand at 1023.680 kb on - strand at 1023.745 kb on + strand at 1023.768 kb on + strand at 1023.769 kb on - strand at 1024.145 kb on + strand, within Psyr_0904 at 1024.145 kb on + strand, within Psyr_0904 at 1024.146 kb on - strand, within Psyr_0904 at 1024.192 kb on + strand, within Psyr_0904 at 1024.192 kb on + strand, within Psyr_0904 at 1024.192 kb on + strand, within Psyr_0904 at 1024.192 kb on + strand, within Psyr_0904 at 1024.192 kb on + strand, within Psyr_0904 at 1024.193 kb on - strand, within Psyr_0904 at 1024.193 kb on - strand, within Psyr_0904 at 1024.295 kb on - strand, within Psyr_0904 at 1024.295 kb on - strand, within Psyr_0904 at 1024.295 kb on - strand, within Psyr_0904 at 1024.295 kb on - strand, within Psyr_0904 at 1024.295 kb on - strand, within Psyr_0904 at 1024.295 kb on - strand, within Psyr_0904 at 1024.905 kb on + strand, within Psyr_0905 at 1024.905 kb on + strand, within Psyr_0905 at 1024.984 kb on - strand, within Psyr_0905 at 1025.037 kb on + strand, within Psyr_0905 at 1025.037 kb on + strand, within Psyr_0905 at 1025.038 kb on - strand, within Psyr_0905 at 1025.038 kb on - strand, within Psyr_0905 at 1025.038 kb on - strand, within Psyr_0905 at 1025.038 kb on - strand, within Psyr_0905 at 1025.499 kb on + strand, within Psyr_0905 at 1025.613 kb on + strand, within Psyr_0905 at 1025.614 kb on - strand, within Psyr_0905 at 1025.774 kb on + strand, within Psyr_0905 at 1025.774 kb on + strand, within Psyr_0905 at 1025.774 kb on + strand, within Psyr_0905 at 1025.774 kb on + strand, within Psyr_0905 at 1025.774 kb on + strand, within Psyr_0905 at 1025.774 kb on + strand, within Psyr_0905 at 1025.774 kb on + strand, within Psyr_0905 at 1025.775 kb on - strand, within Psyr_0905 at 1025.775 kb on - strand, within Psyr_0905 at 1025.775 kb on - strand, within Psyr_0905 at 1025.775 kb on - strand, within Psyr_0905 at 1025.775 kb on - strand, within Psyr_0905 at 1025.775 kb on - strand, within Psyr_0905 at 1025.775 kb on - strand, within Psyr_0905 at 1025.775 kb on - strand, within Psyr_0905 at 1025.775 kb on - strand, within Psyr_0905 at 1025.775 kb on - strand, within Psyr_0905 at 1025.775 kb on - strand, within Psyr_0905 at 1025.775 kb on - strand, within Psyr_0905 at 1025.882 kb on + strand, within Psyr_0905 at 1026.213 kb on - strand, within Psyr_0905 at 1026.213 kb on - strand, within Psyr_0905 at 1026.327 kb on - strand, within Psyr_0905 at 1026.340 kb on - strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.444 kb on + strand at 1026.444 kb on + strand at 1026.444 kb on + strand at 1026.444 kb on + strand at 1026.444 kb on + strand at 1026.444 kb on + strand at 1026.444 kb on + strand at 1026.445 kb on - strand at 1026.445 kb on - strand at 1026.445 kb on - strand at 1026.445 kb on - strand at 1026.445 kb on - strand at 1026.520 kb on - strand at 1026.520 kb on - strand at 1026.520 kb on - strand at 1026.529 kb on + strand at 1026.530 kb on - strand at 1026.530 kb on - strand at 1026.530 kb on - strand at 1026.558 kb on + strand at 1026.585 kb on + strand at 1026.638 kb on + strand at 1026.639 kb on - strand at 1026.645 kb on + strand at 1026.645 kb on + strand at 1026.645 kb on + strand at 1026.645 kb on + strand at 1026.646 kb on - strand at 1026.646 kb on - strand at 1026.646 kb on - strand at 1026.667 kb on + strand at 1026.667 kb on + strand at 1026.667 kb on + strand at 1026.668 kb on - strand at 1026.668 kb on - strand at 1026.668 kb on - strand at 1026.668 kb on - strand at 1026.668 kb on - strand at 1026.668 kb on - strand at 1026.668 kb on - strand at 1026.668 kb on - strand at 1026.669 kb on + strand at 1026.669 kb on + strand at 1026.669 kb on + strand at 1026.670 kb on - strand at 1026.670 kb on - strand at 1026.670 kb on - strand at 1026.670 kb on - strand at 1026.670 kb on - strand at 1026.670 kb on - strand at 1026.670 kb on - strand at 1026.754 kb on - strand at 1026.754 kb on - strand at 1026.776 kb on + strand at 1026.777 kb on - strand at 1026.778 kb on + strand at 1026.778 kb on + strand at 1026.779 kb on - strand at 1026.779 kb on - strand at 1026.798 kb on + strand at 1026.799 kb on - strand at 1026.804 kb on - strand at 1026.989 kb on + strand at 1026.989 kb on + strand at 1026.990 kb on - strand at 1027.015 kb on + strand at 1027.048 kb on - strand at 1027.048 kb on - strand at 1027.048 kb on - strand at 1027.048 kb on - strand at 1027.067 kb on + strand at 1027.067 kb on + strand at 1027.067 kb on + strand at 1027.067 kb on + strand at 1027.067 kb on + strand at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.347 kb on + strand, within Psyr_0906 at 1027.348 kb on - strand, within Psyr_0906 at 1027.348 kb on - strand, within Psyr_0906 at 1027.392 kb on + strand, within Psyr_0906 at 1027.393 kb on - strand, within Psyr_0906
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 0.775 ug/ml remove 1,023,680 - -0.8 1,023,680 - +0.9 1,023,745 + +0.9 1,023,768 + -0.5 1,023,769 - -0.4 1,024,145 + Psyr_0904 0.40 -0.2 1,024,145 + Psyr_0904 0.40 +0.3 1,024,146 - Psyr_0904 0.40 +0.2 1,024,192 + Psyr_0904 0.46 +0.4 1,024,192 + Psyr_0904 0.46 -0.9 1,024,192 + Psyr_0904 0.46 +0.7 1,024,192 + Psyr_0904 0.46 +0.1 1,024,192 + Psyr_0904 0.46 +0.3 1,024,193 - Psyr_0904 0.46 -0.4 1,024,193 - Psyr_0904 0.46 +0.6 1,024,295 - Psyr_0904 0.59 -1.2 1,024,295 - Psyr_0904 0.59 +1.9 1,024,295 - Psyr_0904 0.59 -0.1 1,024,295 - Psyr_0904 0.59 -0.0 1,024,295 - Psyr_0904 0.59 +0.7 1,024,295 - Psyr_0904 0.59 +0.1 1,024,905 + Psyr_0905 0.12 -2.9 1,024,905 + Psyr_0905 0.12 +1.4 1,024,984 - Psyr_0905 0.16 +0.0 1,025,037 + Psyr_0905 0.19 -1.4 1,025,037 + Psyr_0905 0.19 +0.0 1,025,038 - Psyr_0905 0.19 -0.7 1,025,038 - Psyr_0905 0.19 -0.1 1,025,038 - Psyr_0905 0.19 +0.2 1,025,038 - Psyr_0905 0.19 +0.5 1,025,499 + Psyr_0905 0.43 +0.7 1,025,613 + Psyr_0905 0.49 +0.5 1,025,614 - Psyr_0905 0.49 +0.3 1,025,774 + Psyr_0905 0.57 -0.2 1,025,774 + Psyr_0905 0.57 -0.5 1,025,774 + Psyr_0905 0.57 -0.3 1,025,774 + Psyr_0905 0.57 +0.3 1,025,774 + Psyr_0905 0.57 +0.7 1,025,774 + Psyr_0905 0.57 -0.7 1,025,774 + Psyr_0905 0.57 +0.4 1,025,775 - Psyr_0905 0.58 -0.7 1,025,775 - Psyr_0905 0.58 -0.6 1,025,775 - Psyr_0905 0.58 -0.8 1,025,775 - Psyr_0905 0.58 -0.7 1,025,775 - Psyr_0905 0.58 +1.2 1,025,775 - Psyr_0905 0.58 -0.3 1,025,775 - Psyr_0905 0.58 +0.6 1,025,775 - Psyr_0905 0.58 -0.1 1,025,775 - Psyr_0905 0.58 -0.1 1,025,775 - Psyr_0905 0.58 +0.1 1,025,775 - Psyr_0905 0.58 +0.2 1,025,775 - Psyr_0905 0.58 -0.5 1,025,882 + Psyr_0905 0.63 +1.9 1,026,213 - Psyr_0905 0.80 +1.3 1,026,213 - Psyr_0905 0.80 +0.0 1,026,327 - Psyr_0905 0.86 +0.2 1,026,340 - Psyr_0905 0.87 +0.9 1,026,395 + Psyr_0905 0.90 -1.0 1,026,395 + Psyr_0905 0.90 +0.6 1,026,395 + Psyr_0905 0.90 +0.7 1,026,395 + Psyr_0905 0.90 +1.0 1,026,395 + Psyr_0905 0.90 -0.2 1,026,395 + Psyr_0905 0.90 +0.7 1,026,395 + Psyr_0905 0.90 -0.1 1,026,395 + Psyr_0905 0.90 -1.1 1,026,395 + Psyr_0905 0.90 -0.0 1,026,395 + Psyr_0905 0.90 -1.9 1,026,396 - Psyr_0905 0.90 +0.8 1,026,396 - Psyr_0905 0.90 +0.9 1,026,396 - Psyr_0905 0.90 -1.5 1,026,396 - Psyr_0905 0.90 -1.0 1,026,396 - Psyr_0905 0.90 -0.6 1,026,396 - Psyr_0905 0.90 +0.6 1,026,396 - Psyr_0905 0.90 +0.5 1,026,396 - Psyr_0905 0.90 -0.1 1,026,396 - Psyr_0905 0.90 -0.3 1,026,396 - Psyr_0905 0.90 +0.9 1,026,396 - Psyr_0905 0.90 +0.1 1,026,396 - Psyr_0905 0.90 +0.6 1,026,396 - Psyr_0905 0.90 +1.2 1,026,396 - Psyr_0905 0.90 +0.1 1,026,396 - Psyr_0905 0.90 +1.6 1,026,444 + +1.2 1,026,444 + +0.1 1,026,444 + +0.0 1,026,444 + +0.5 1,026,444 + -0.6 1,026,444 + +0.3 1,026,444 + +0.0 1,026,445 - +0.2 1,026,445 - +0.7 1,026,445 - +0.2 1,026,445 - -0.1 1,026,445 - +0.4 1,026,520 - +0.3 1,026,520 - -1.5 1,026,520 - -0.9 1,026,529 + -0.6 1,026,530 - +0.2 1,026,530 - +0.3 1,026,530 - +0.6 1,026,558 + +0.3 1,026,585 + +0.2 1,026,638 + -0.4 1,026,639 - -0.1 1,026,645 + -0.7 1,026,645 + -0.4 1,026,645 + -0.1 1,026,645 + +0.3 1,026,646 - +0.7 1,026,646 - -0.5 1,026,646 - +0.1 1,026,667 + -0.0 1,026,667 + +1.0 1,026,667 + -1.5 1,026,668 - -0.9 1,026,668 - -0.2 1,026,668 - +0.1 1,026,668 - -1.1 1,026,668 - -0.8 1,026,668 - +0.3 1,026,668 - +1.2 1,026,668 - +0.6 1,026,669 + -0.9 1,026,669 + +0.9 1,026,669 + +1.6 1,026,670 - +0.3 1,026,670 - +0.3 1,026,670 - +0.7 1,026,670 - +0.4 1,026,670 - -0.3 1,026,670 - -0.0 1,026,670 - -0.9 1,026,754 - +1.0 1,026,754 - -0.5 1,026,776 + +0.8 1,026,777 - +0.5 1,026,778 + +0.4 1,026,778 + +0.9 1,026,779 - -1.5 1,026,779 - +1.6 1,026,798 + -0.1 1,026,799 - +0.9 1,026,804 - -0.4 1,026,989 + +0.4 1,026,989 + -0.1 1,026,990 - -0.3 1,027,015 + +1.6 1,027,048 - +0.4 1,027,048 - -1.5 1,027,048 - -0.6 1,027,048 - +0.5 1,027,067 + -0.9 1,027,067 + +0.6 1,027,067 + +0.4 1,027,067 + +0.4 1,027,067 + -0.1 1,027,263 + Psyr_0906 0.16 -0.7 1,027,263 + Psyr_0906 0.16 +0.2 1,027,263 + Psyr_0906 0.16 +0.5 1,027,263 + Psyr_0906 0.16 +0.4 1,027,263 + Psyr_0906 0.16 +0.4 1,027,263 + Psyr_0906 0.16 +0.3 1,027,264 - Psyr_0906 0.16 +0.7 1,027,264 - Psyr_0906 0.16 -0.3 1,027,264 - Psyr_0906 0.16 -1.6 1,027,264 - Psyr_0906 0.16 +0.2 1,027,264 - Psyr_0906 0.16 +0.9 1,027,264 - Psyr_0906 0.16 +0.9 1,027,264 - Psyr_0906 0.16 +0.4 1,027,264 - Psyr_0906 0.16 -1.1 1,027,264 - Psyr_0906 0.16 -0.5 1,027,264 - Psyr_0906 0.16 +0.1 1,027,347 + Psyr_0906 0.20 -0.8 1,027,348 - Psyr_0906 0.20 +1.2 1,027,348 - Psyr_0906 0.20 -0.1 1,027,392 + Psyr_0906 0.22 +0.7 1,027,393 - Psyr_0906 0.23 -0.4
Or see this region's nucleotide sequence