Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5020 and PfGW456L13_5021 are separated by 2 nucleotides PfGW456L13_5021 and PfGW456L13_5022 are separated by 27 nucleotides PfGW456L13_5022 and PfGW456L13_5023 overlap by 8 nucleotides PfGW456L13_5023 and PfGW456L13_5024 are separated by 249 nucleotides
PfGW456L13_5020 - Manganese superoxide dismutase (EC 1.15.1.1), at 5,593,509 to 5,594,120
_5020
PfGW456L13_5021 - FOG: TPR repeat, at 5,594,123 to 5,594,551
_5021
PfGW456L13_5022 - Fumarate hydratase class II (EC 4.2.1.2), at 5,594,579 to 5,595,955
_5022
PfGW456L13_5023 - FagA protein, at 5,595,948 to 5,596,343
_5023
PfGW456L13_5024 - TldE protein, part of TldE/TldD proteolytic complex, at 5,596,593 to 5,597,939
_5024
Position (kb) 5594
5595
5596 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5593.579 kb on + strand, within PfGW456L13_5020 at 5593.579 kb on + strand, within PfGW456L13_5020 at 5593.609 kb on + strand, within PfGW456L13_5020 at 5593.609 kb on + strand, within PfGW456L13_5020 at 5593.609 kb on + strand, within PfGW456L13_5020 at 5593.610 kb on - strand, within PfGW456L13_5020 at 5593.610 kb on - strand, within PfGW456L13_5020 at 5593.610 kb on - strand, within PfGW456L13_5020 at 5593.612 kb on + strand, within PfGW456L13_5020 at 5593.612 kb on + strand, within PfGW456L13_5020 at 5593.613 kb on - strand, within PfGW456L13_5020 at 5593.613 kb on - strand, within PfGW456L13_5020 at 5593.613 kb on - strand, within PfGW456L13_5020 at 5593.766 kb on + strand, within PfGW456L13_5020 at 5593.766 kb on + strand, within PfGW456L13_5020 at 5593.767 kb on - strand, within PfGW456L13_5020 at 5593.767 kb on - strand, within PfGW456L13_5020 at 5593.978 kb on + strand, within PfGW456L13_5020 at 5593.978 kb on + strand, within PfGW456L13_5020 at 5593.979 kb on - strand, within PfGW456L13_5020 at 5593.979 kb on - strand, within PfGW456L13_5020 at 5594.017 kb on + strand, within PfGW456L13_5020 at 5594.017 kb on + strand, within PfGW456L13_5020 at 5594.017 kb on + strand, within PfGW456L13_5020 at 5594.017 kb on + strand, within PfGW456L13_5020 at 5594.017 kb on + strand, within PfGW456L13_5020 at 5594.018 kb on - strand, within PfGW456L13_5020 at 5594.018 kb on - strand, within PfGW456L13_5020 at 5594.018 kb on - strand, within PfGW456L13_5020 at 5594.018 kb on - strand, within PfGW456L13_5020 at 5594.018 kb on - strand, within PfGW456L13_5020 at 5594.018 kb on - strand, within PfGW456L13_5020 at 5594.018 kb on - strand, within PfGW456L13_5020 at 5594.018 kb on - strand, within PfGW456L13_5020 at 5594.038 kb on + strand, within PfGW456L13_5020 at 5594.039 kb on - strand, within PfGW456L13_5020 at 5594.111 kb on + strand at 5594.111 kb on + strand at 5594.111 kb on + strand at 5594.111 kb on + strand at 5594.112 kb on - strand at 5594.112 kb on - strand at 5594.112 kb on - strand at 5594.232 kb on + strand, within PfGW456L13_5021 at 5594.232 kb on + strand, within PfGW456L13_5021 at 5594.232 kb on + strand, within PfGW456L13_5021 at 5594.232 kb on + strand, within PfGW456L13_5021 at 5594.233 kb on - strand, within PfGW456L13_5021 at 5594.233 kb on - strand, within PfGW456L13_5021 at 5594.279 kb on + strand, within PfGW456L13_5021 at 5594.279 kb on + strand, within PfGW456L13_5021 at 5594.280 kb on - strand, within PfGW456L13_5021 at 5594.331 kb on + strand, within PfGW456L13_5021 at 5594.331 kb on + strand, within PfGW456L13_5021 at 5594.331 kb on + strand, within PfGW456L13_5021 at 5594.331 kb on + strand, within PfGW456L13_5021 at 5594.331 kb on + strand, within PfGW456L13_5021 at 5594.331 kb on + strand, within PfGW456L13_5021 at 5594.332 kb on - strand, within PfGW456L13_5021 at 5594.332 kb on - strand, within PfGW456L13_5021 at 5594.332 kb on - strand, within PfGW456L13_5021 at 5594.332 kb on - strand, within PfGW456L13_5021 at 5594.473 kb on - strand, within PfGW456L13_5021 at 5594.580 kb on + strand at 5594.580 kb on + strand at 5594.647 kb on + strand at 5594.648 kb on - strand at 5594.648 kb on - strand at 5594.648 kb on - strand at 5594.648 kb on - strand at 5594.648 kb on - strand at 5594.688 kb on + strand at 5595.131 kb on + strand, within PfGW456L13_5022 at 5595.131 kb on + strand, within PfGW456L13_5022 at 5595.131 kb on + strand, within PfGW456L13_5022 at 5595.131 kb on + strand, within PfGW456L13_5022 at 5595.132 kb on - strand, within PfGW456L13_5022 at 5595.132 kb on - strand, within PfGW456L13_5022 at 5595.132 kb on - strand, within PfGW456L13_5022 at 5595.224 kb on + strand, within PfGW456L13_5022 at 5595.224 kb on + strand, within PfGW456L13_5022 at 5595.224 kb on + strand, within PfGW456L13_5022 at 5595.224 kb on + strand, within PfGW456L13_5022 at 5595.224 kb on + strand, within PfGW456L13_5022 at 5595.415 kb on + strand, within PfGW456L13_5022 at 5595.415 kb on + strand, within PfGW456L13_5022 at 5595.416 kb on - strand, within PfGW456L13_5022 at 5595.862 kb on + strand at 5595.863 kb on - strand at 5595.891 kb on + strand at 5595.925 kb on + strand at 5595.925 kb on + strand at 5595.925 kb on + strand at 5595.925 kb on + strand at 5595.947 kb on - strand at 5595.947 kb on - strand at 5595.949 kb on + strand at 5595.949 kb on + strand at 5595.950 kb on - strand at 5595.950 kb on - strand at 5595.950 kb on - strand at 5595.950 kb on - strand at 5595.950 kb on - strand at 5595.978 kb on + strand at 5595.979 kb on - strand at 5595.979 kb on - strand at 5595.979 kb on - strand at 5596.011 kb on - strand, within PfGW456L13_5023 at 5596.027 kb on + strand, within PfGW456L13_5023 at 5596.027 kb on + strand, within PfGW456L13_5023 at 5596.027 kb on + strand, within PfGW456L13_5023 at 5596.027 kb on + strand, within PfGW456L13_5023 at 5596.028 kb on - strand, within PfGW456L13_5023 at 5596.111 kb on + strand, within PfGW456L13_5023 at 5596.111 kb on + strand, within PfGW456L13_5023 at 5596.111 kb on + strand, within PfGW456L13_5023 at 5596.111 kb on + strand, within PfGW456L13_5023 at 5596.111 kb on + strand, within PfGW456L13_5023 at 5596.112 kb on - strand, within PfGW456L13_5023 at 5596.112 kb on - strand, within PfGW456L13_5023 at 5596.112 kb on - strand, within PfGW456L13_5023 at 5596.112 kb on - strand, within PfGW456L13_5023 at 5596.220 kb on - strand, within PfGW456L13_5023 at 5596.238 kb on - strand, within PfGW456L13_5023 at 5596.315 kb on + strand at 5596.315 kb on + strand at 5596.316 kb on - strand at 5596.316 kb on - strand at 5596.531 kb on + strand at 5596.531 kb on + strand at 5596.532 kb on - strand at 5596.532 kb on - strand at 5596.594 kb on + strand at 5596.594 kb on + strand at 5596.594 kb on + strand at 5596.595 kb on - strand at 5596.595 kb on - strand at 5596.595 kb on - strand at 5596.595 kb on - strand at 5596.595 kb on - strand at 5596.646 kb on + strand at 5596.646 kb on + strand at 5596.647 kb on - strand at 5596.729 kb on - strand, within PfGW456L13_5024 at 5596.783 kb on + strand, within PfGW456L13_5024 at 5596.952 kb on - strand, within PfGW456L13_5024
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 5,593,579 + PfGW456L13_5020 0.11 -0.4 5,593,579 + PfGW456L13_5020 0.11 +0.6 5,593,609 + PfGW456L13_5020 0.16 +1.5 5,593,609 + PfGW456L13_5020 0.16 +0.2 5,593,609 + PfGW456L13_5020 0.16 +0.3 5,593,610 - PfGW456L13_5020 0.17 +1.2 5,593,610 - PfGW456L13_5020 0.17 +1.1 5,593,610 - PfGW456L13_5020 0.17 +0.6 5,593,612 + PfGW456L13_5020 0.17 +2.1 5,593,612 + PfGW456L13_5020 0.17 -0.8 5,593,613 - PfGW456L13_5020 0.17 -0.6 5,593,613 - PfGW456L13_5020 0.17 +1.7 5,593,613 - PfGW456L13_5020 0.17 +2.2 5,593,766 + PfGW456L13_5020 0.42 -0.7 5,593,766 + PfGW456L13_5020 0.42 -1.1 5,593,767 - PfGW456L13_5020 0.42 -0.3 5,593,767 - PfGW456L13_5020 0.42 -1.0 5,593,978 + PfGW456L13_5020 0.77 -0.3 5,593,978 + PfGW456L13_5020 0.77 -0.6 5,593,979 - PfGW456L13_5020 0.77 +1.5 5,593,979 - PfGW456L13_5020 0.77 -0.3 5,594,017 + PfGW456L13_5020 0.83 -0.6 5,594,017 + PfGW456L13_5020 0.83 -0.6 5,594,017 + PfGW456L13_5020 0.83 -0.1 5,594,017 + PfGW456L13_5020 0.83 +1.1 5,594,017 + PfGW456L13_5020 0.83 +0.9 5,594,018 - PfGW456L13_5020 0.83 -0.5 5,594,018 - PfGW456L13_5020 0.83 -0.6 5,594,018 - PfGW456L13_5020 0.83 +0.3 5,594,018 - PfGW456L13_5020 0.83 +1.5 5,594,018 - PfGW456L13_5020 0.83 -1.8 5,594,018 - PfGW456L13_5020 0.83 -0.3 5,594,018 - PfGW456L13_5020 0.83 +0.8 5,594,018 - PfGW456L13_5020 0.83 +1.3 5,594,038 + PfGW456L13_5020 0.86 -1.3 5,594,039 - PfGW456L13_5020 0.87 +0.1 5,594,111 + +0.8 5,594,111 + -0.2 5,594,111 + +1.1 5,594,111 + -0.3 5,594,112 - +0.4 5,594,112 - -1.9 5,594,112 - +1.3 5,594,232 + PfGW456L13_5021 0.25 +0.3 5,594,232 + PfGW456L13_5021 0.25 -0.5 5,594,232 + PfGW456L13_5021 0.25 -1.0 5,594,232 + PfGW456L13_5021 0.25 -1.1 5,594,233 - PfGW456L13_5021 0.26 -1.5 5,594,233 - PfGW456L13_5021 0.26 +1.4 5,594,279 + PfGW456L13_5021 0.36 -2.4 5,594,279 + PfGW456L13_5021 0.36 +0.5 5,594,280 - PfGW456L13_5021 0.37 +2.6 5,594,331 + PfGW456L13_5021 0.48 +0.6 5,594,331 + PfGW456L13_5021 0.48 -0.2 5,594,331 + PfGW456L13_5021 0.48 -3.9 5,594,331 + PfGW456L13_5021 0.48 +0.5 5,594,331 + PfGW456L13_5021 0.48 +0.6 5,594,331 + PfGW456L13_5021 0.48 +0.1 5,594,332 - PfGW456L13_5021 0.49 +0.6 5,594,332 - PfGW456L13_5021 0.49 -0.4 5,594,332 - PfGW456L13_5021 0.49 +0.3 5,594,332 - PfGW456L13_5021 0.49 +1.5 5,594,473 - PfGW456L13_5021 0.82 +1.1 5,594,580 + -0.5 5,594,580 + +1.2 5,594,647 + +0.9 5,594,648 - -2.4 5,594,648 - +0.9 5,594,648 - +2.3 5,594,648 - +0.5 5,594,648 - +0.8 5,594,688 + +0.7 5,595,131 + PfGW456L13_5022 0.40 -0.5 5,595,131 + PfGW456L13_5022 0.40 +0.5 5,595,131 + PfGW456L13_5022 0.40 -2.8 5,595,131 + PfGW456L13_5022 0.40 +0.9 5,595,132 - PfGW456L13_5022 0.40 -2.3 5,595,132 - PfGW456L13_5022 0.40 +0.4 5,595,132 - PfGW456L13_5022 0.40 -2.5 5,595,224 + PfGW456L13_5022 0.47 -1.1 5,595,224 + PfGW456L13_5022 0.47 -0.3 5,595,224 + PfGW456L13_5022 0.47 -2.6 5,595,224 + PfGW456L13_5022 0.47 -2.7 5,595,224 + PfGW456L13_5022 0.47 -1.6 5,595,415 + PfGW456L13_5022 0.61 -0.3 5,595,415 + PfGW456L13_5022 0.61 -2.5 5,595,416 - PfGW456L13_5022 0.61 -3.8 5,595,862 + -0.5 5,595,863 - +0.3 5,595,891 + -3.2 5,595,925 + -3.3 5,595,925 + +3.2 5,595,925 + +1.7 5,595,925 + +0.2 5,595,947 - -1.5 5,595,947 - +0.5 5,595,949 + -1.7 5,595,949 + +1.4 5,595,950 - +1.7 5,595,950 - +0.9 5,595,950 - +0.5 5,595,950 - -2.2 5,595,950 - +1.4 5,595,978 + +1.0 5,595,979 - +1.2 5,595,979 - +0.8 5,595,979 - +1.1 5,596,011 - PfGW456L13_5023 0.16 -2.7 5,596,027 + PfGW456L13_5023 0.20 -2.1 5,596,027 + PfGW456L13_5023 0.20 +1.1 5,596,027 + PfGW456L13_5023 0.20 -0.1 5,596,027 + PfGW456L13_5023 0.20 +0.4 5,596,028 - PfGW456L13_5023 0.20 -3.4 5,596,111 + PfGW456L13_5023 0.41 -0.8 5,596,111 + PfGW456L13_5023 0.41 +0.2 5,596,111 + PfGW456L13_5023 0.41 +0.8 5,596,111 + PfGW456L13_5023 0.41 +0.2 5,596,111 + PfGW456L13_5023 0.41 +0.8 5,596,112 - PfGW456L13_5023 0.41 -1.7 5,596,112 - PfGW456L13_5023 0.41 +1.6 5,596,112 - PfGW456L13_5023 0.41 -0.8 5,596,112 - PfGW456L13_5023 0.41 +1.3 5,596,220 - PfGW456L13_5023 0.69 +0.6 5,596,238 - PfGW456L13_5023 0.73 +0.9 5,596,315 + +1.7 5,596,315 + +0.3 5,596,316 - -0.1 5,596,316 - +0.1 5,596,531 + -1.2 5,596,531 + +1.2 5,596,532 - -0.8 5,596,532 - -1.8 5,596,594 + -1.0 5,596,594 + +0.1 5,596,594 + -0.1 5,596,595 - +0.5 5,596,595 - -0.7 5,596,595 - +0.6 5,596,595 - +1.0 5,596,595 - -1.9 5,596,646 + +1.3 5,596,646 + +0.4 5,596,647 - -3.2 5,596,729 - PfGW456L13_5024 0.10 -2.8 5,596,783 + PfGW456L13_5024 0.14 -1.3 5,596,952 - PfGW456L13_5024 0.27 +0.5
Or see this region's nucleotide sequence