Strain Fitness in Pseudomonas sp. S08-1 around OH686_01290

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01285 and OH686_01290 overlap by 4 nucleotidesOH686_01290 and OH686_01295 overlap by 8 nucleotides OH686_01285: OH686_01285 - malto-oligosyltrehalose trehalohydrolase, at 288,972 to 290,726 _01285 OH686_01290: OH686_01290 - 4-alpha-glucanotransferase, at 290,723 to 292,783 _01290 OH686_01295: OH686_01295 - malto-oligosyltrehalose synthase, at 292,776 to 295,586 _01295 Position (kb) 290 291 292 293Strain fitness (log2 ratio) -2 -1 0 1 2at 289.732 kb on + strand, within OH686_01285at 289.732 kb on + strand, within OH686_01285at 289.732 kb on + strand, within OH686_01285at 289.732 kb on + strand, within OH686_01285at 289.732 kb on + strand, within OH686_01285at 289.733 kb on - strand, within OH686_01285at 289.733 kb on - strand, within OH686_01285at 289.733 kb on - strand, within OH686_01285at 289.733 kb on - strand, within OH686_01285at 289.733 kb on - strand, within OH686_01285at 289.733 kb on - strand, within OH686_01285at 289.733 kb on - strand, within OH686_01285at 289.782 kb on + strand, within OH686_01285at 289.782 kb on + strand, within OH686_01285at 289.782 kb on + strand, within OH686_01285at 289.782 kb on + strand, within OH686_01285at 289.782 kb on + strand, within OH686_01285at 289.783 kb on - strand, within OH686_01285at 289.783 kb on - strand, within OH686_01285at 289.783 kb on - strand, within OH686_01285at 289.783 kb on - strand, within OH686_01285at 289.863 kb on + strand, within OH686_01285at 289.863 kb on + strand, within OH686_01285at 289.863 kb on + strand, within OH686_01285at 289.863 kb on + strand, within OH686_01285at 289.863 kb on + strand, within OH686_01285at 289.863 kb on + strand, within OH686_01285at 289.863 kb on + strand, within OH686_01285at 289.863 kb on + strand, within OH686_01285at 289.863 kb on + strand, within OH686_01285at 289.863 kb on + strand, within OH686_01285at 289.863 kb on + strand, within OH686_01285at 289.864 kb on - strand, within OH686_01285at 289.932 kb on + strand, within OH686_01285at 289.932 kb on + strand, within OH686_01285at 289.932 kb on + strand, within OH686_01285at 289.932 kb on + strand, within OH686_01285at 289.933 kb on - strand, within OH686_01285at 289.933 kb on - strand, within OH686_01285at 289.933 kb on - strand, within OH686_01285at 289.933 kb on - strand, within OH686_01285at 289.935 kb on + strand, within OH686_01285at 289.935 kb on + strand, within OH686_01285at 289.935 kb on + strand, within OH686_01285at 289.936 kb on - strand, within OH686_01285at 289.936 kb on - strand, within OH686_01285at 289.936 kb on - strand, within OH686_01285at 290.071 kb on + strand, within OH686_01285at 290.071 kb on + strand, within OH686_01285at 290.071 kb on + strand, within OH686_01285at 290.071 kb on + strand, within OH686_01285at 290.072 kb on - strand, within OH686_01285at 290.072 kb on - strand, within OH686_01285at 290.436 kb on + strand, within OH686_01285at 290.436 kb on + strand, within OH686_01285at 290.436 kb on + strand, within OH686_01285at 290.436 kb on + strand, within OH686_01285at 290.436 kb on + strand, within OH686_01285at 290.437 kb on - strand, within OH686_01285at 290.437 kb on - strand, within OH686_01285at 290.437 kb on - strand, within OH686_01285at 290.440 kb on - strand, within OH686_01285at 290.440 kb on - strand, within OH686_01285at 290.638 kb on + strandat 290.638 kb on + strandat 290.639 kb on - strandat 290.639 kb on - strandat 290.639 kb on - strandat 290.990 kb on + strand, within OH686_01290at 290.990 kb on + strand, within OH686_01290at 290.990 kb on + strand, within OH686_01290at 290.991 kb on - strand, within OH686_01290at 290.991 kb on - strand, within OH686_01290at 290.991 kb on - strand, within OH686_01290at 290.991 kb on - strand, within OH686_01290at 290.991 kb on - strand, within OH686_01290at 291.033 kb on + strand, within OH686_01290at 291.034 kb on - strand, within OH686_01290at 291.034 kb on - strand, within OH686_01290at 291.191 kb on + strand, within OH686_01290at 291.192 kb on - strand, within OH686_01290at 291.332 kb on + strand, within OH686_01290at 291.332 kb on + strand, within OH686_01290at 291.332 kb on + strand, within OH686_01290at 291.332 kb on + strand, within OH686_01290at 291.333 kb on - strand, within OH686_01290at 291.333 kb on - strand, within OH686_01290at 291.333 kb on - strand, within OH686_01290at 291.333 kb on - strand, within OH686_01290at 291.333 kb on - strand, within OH686_01290at 291.333 kb on - strand, within OH686_01290at 291.333 kb on - strand, within OH686_01290at 291.333 kb on - strand, within OH686_01290at 291.333 kb on - strand, within OH686_01290at 291.333 kb on - strand, within OH686_01290at 291.530 kb on + strand, within OH686_01290at 292.137 kb on - strand, within OH686_01290at 292.137 kb on - strand, within OH686_01290at 292.571 kb on + strand, within OH686_01290at 292.571 kb on + strand, within OH686_01290at 292.572 kb on - strand, within OH686_01290at 292.572 kb on - strand, within OH686_01290at 292.572 kb on - strand, within OH686_01290at 292.854 kb on + strandat 292.855 kb on - strandat 292.855 kb on - strandat 292.855 kb on - strandat 292.855 kb on - strandat 292.855 kb on - strandat 292.884 kb on + strandat 292.884 kb on + strandat 292.884 kb on + strandat 292.885 kb on - strandat 292.885 kb on - strandat 292.885 kb on - strandat 292.885 kb on - strandat 293.038 kb on + strandat 293.038 kb on + strandat 293.038 kb on + strandat 293.038 kb on + strandat 293.038 kb on + strandat 293.038 kb on + strandat 293.038 kb on + strandat 293.039 kb on - strandat 293.039 kb on - strandat 293.039 kb on - strandat 293.039 kb on - strandat 293.039 kb on - strandat 293.039 kb on - strandat 293.039 kb on - strandat 293.086 kb on + strand, within OH686_01295at 293.087 kb on - strand, within OH686_01295at 293.087 kb on - strand, within OH686_01295at 293.202 kb on + strand, within OH686_01295at 293.265 kb on + strand, within OH686_01295at 293.265 kb on + strand, within OH686_01295at 293.265 kb on + strand, within OH686_01295at 293.265 kb on + strand, within OH686_01295at 293.265 kb on + strand, within OH686_01295at 293.266 kb on - strand, within OH686_01295at 293.266 kb on - strand, within OH686_01295at 293.266 kb on - strand, within OH686_01295at 293.310 kb on + strand, within OH686_01295at 293.311 kb on - strand, within OH686_01295at 293.748 kb on + strand, within OH686_01295

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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289,732 + OH686_01285 0.43 -0.7
289,732 + OH686_01285 0.43 -0.3
289,732 + OH686_01285 0.43 -0.5
289,732 + OH686_01285 0.43 +0.7
289,732 + OH686_01285 0.43 +0.2
289,733 - OH686_01285 0.43 +0.5
289,733 - OH686_01285 0.43 -0.9
289,733 - OH686_01285 0.43 +0.8
289,733 - OH686_01285 0.43 +1.4
289,733 - OH686_01285 0.43 -0.7
289,733 - OH686_01285 0.43 +0.1
289,733 - OH686_01285 0.43 +0.8
289,782 + OH686_01285 0.46 -2.2
289,782 + OH686_01285 0.46 +1.1
289,782 + OH686_01285 0.46 +0.7
289,782 + OH686_01285 0.46 -0.2
289,782 + OH686_01285 0.46 +0.7
289,783 - OH686_01285 0.46 +1.0
289,783 - OH686_01285 0.46 +0.2
289,783 - OH686_01285 0.46 +0.1
289,783 - OH686_01285 0.46 -0.5
289,863 + OH686_01285 0.51 -0.9
289,863 + OH686_01285 0.51 +0.6
289,863 + OH686_01285 0.51 -0.3
289,863 + OH686_01285 0.51 +0.2
289,863 + OH686_01285 0.51 +0.9
289,863 + OH686_01285 0.51 +0.6
289,863 + OH686_01285 0.51 -1.1
289,863 + OH686_01285 0.51 +0.9
289,863 + OH686_01285 0.51 +1.2
289,863 + OH686_01285 0.51 +0.3
289,863 + OH686_01285 0.51 -0.1
289,864 - OH686_01285 0.51 +0.2
289,932 + OH686_01285 0.55 -0.6
289,932 + OH686_01285 0.55 +1.5
289,932 + OH686_01285 0.55 -0.1
289,932 + OH686_01285 0.55 -0.3
289,933 - OH686_01285 0.55 -0.4
289,933 - OH686_01285 0.55 +1.2
289,933 - OH686_01285 0.55 +1.2
289,933 - OH686_01285 0.55 +0.4
289,935 + OH686_01285 0.55 -0.5
289,935 + OH686_01285 0.55 +0.1
289,935 + OH686_01285 0.55 -0.1
289,936 - OH686_01285 0.55 +0.9
289,936 - OH686_01285 0.55 +0.3
289,936 - OH686_01285 0.55 +0.5
290,071 + OH686_01285 0.63 -0.5
290,071 + OH686_01285 0.63 +0.4
290,071 + OH686_01285 0.63 -1.0
290,071 + OH686_01285 0.63 +0.7
290,072 - OH686_01285 0.63 -0.2
290,072 - OH686_01285 0.63 +0.1
290,436 + OH686_01285 0.83 -1.9
290,436 + OH686_01285 0.83 +0.1
290,436 + OH686_01285 0.83 -0.5
290,436 + OH686_01285 0.83 +0.6
290,436 + OH686_01285 0.83 -1.0
290,437 - OH686_01285 0.83 +0.5
290,437 - OH686_01285 0.83 +1.0
290,437 - OH686_01285 0.83 +0.3
290,440 - OH686_01285 0.84 -1.1
290,440 - OH686_01285 0.84 -0.6
290,638 + +0.9
290,638 + +0.7
290,639 - -0.8
290,639 - -1.3
290,639 - +0.2
290,990 + OH686_01290 0.13 +0.6
290,990 + OH686_01290 0.13 -0.9
290,990 + OH686_01290 0.13 +0.6
290,991 - OH686_01290 0.13 +0.5
290,991 - OH686_01290 0.13 -0.1
290,991 - OH686_01290 0.13 -1.0
290,991 - OH686_01290 0.13 -0.5
290,991 - OH686_01290 0.13 -0.1
291,033 + OH686_01290 0.15 -0.1
291,034 - OH686_01290 0.15 +0.3
291,034 - OH686_01290 0.15 -0.4
291,191 + OH686_01290 0.23 +1.0
291,192 - OH686_01290 0.23 -0.2
291,332 + OH686_01290 0.30 -0.5
291,332 + OH686_01290 0.30 +1.5
291,332 + OH686_01290 0.30 +0.1
291,332 + OH686_01290 0.30 -0.8
291,333 - OH686_01290 0.30 +0.5
291,333 - OH686_01290 0.30 -0.4
291,333 - OH686_01290 0.30 +0.7
291,333 - OH686_01290 0.30 +0.1
291,333 - OH686_01290 0.30 +2.3
291,333 - OH686_01290 0.30 +0.5
291,333 - OH686_01290 0.30 -0.1
291,333 - OH686_01290 0.30 -0.3
291,333 - OH686_01290 0.30 +0.0
291,333 - OH686_01290 0.30 +0.3
291,530 + OH686_01290 0.39 -0.2
292,137 - OH686_01290 0.69 -1.7
292,137 - OH686_01290 0.69 +0.3
292,571 + OH686_01290 0.90 -0.0
292,571 + OH686_01290 0.90 +0.4
292,572 - OH686_01290 0.90 -0.4
292,572 - OH686_01290 0.90 -0.2
292,572 - OH686_01290 0.90 +0.1
292,854 + -0.6
292,855 - -0.1
292,855 - +0.1
292,855 - +0.2
292,855 - -0.3
292,855 - -1.1
292,884 + +1.2
292,884 + -0.3
292,884 + -0.3
292,885 - -0.3
292,885 - -0.4
292,885 - -0.5
292,885 - -0.5
293,038 + -0.2
293,038 + -0.2
293,038 + +0.0
293,038 + -1.9
293,038 + -0.5
293,038 + +1.7
293,038 + -0.3
293,039 - +0.8
293,039 - +0.9
293,039 - +0.2
293,039 - +0.3
293,039 - +0.5
293,039 - +0.0
293,039 - -0.5
293,086 + OH686_01295 0.11 -2.1
293,087 - OH686_01295 0.11 +0.1
293,087 - OH686_01295 0.11 -0.2
293,202 + OH686_01295 0.15 +0.3
293,265 + OH686_01295 0.17 -0.2
293,265 + OH686_01295 0.17 -0.2
293,265 + OH686_01295 0.17 +0.4
293,265 + OH686_01295 0.17 -0.1
293,265 + OH686_01295 0.17 -0.4
293,266 - OH686_01295 0.17 -0.1
293,266 - OH686_01295 0.17 +0.1
293,266 - OH686_01295 0.17 -0.9
293,310 + OH686_01295 0.19 -0.2
293,311 - OH686_01295 0.19 -0.2
293,748 + OH686_01295 0.35 -0.1

Or see this region's nucleotide sequence