Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4141 and EX28DRAFT_4142 are separated by 23 nucleotides EX28DRAFT_4142 and EX28DRAFT_4143 overlap by 4 nucleotides EX28DRAFT_4143 and EX28DRAFT_4144 are separated by 67 nucleotides
EX28DRAFT_4141: EX28DRAFT_4141 - Disulfide bond chaperones of the HSP33 family, at 121,941 to 122,819
_4141
EX28DRAFT_4142: EX28DRAFT_4142 - Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog), at 122,843 to 123,244
_4142
EX28DRAFT_4143: EX28DRAFT_4143 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 123,241 to 123,924
_4143
EX28DRAFT_4144: EX28DRAFT_4144 - Intracellular growth attenuator protein IgaA, at 123,992 to 126,127
_4144
Position (kb) 122
123
124 Strain fitness (log2 ratio) -2
-1
0
1
2 at 122.011 kb on + strand at 122.011 kb on + strand at 122.011 kb on + strand at 122.012 kb on - strand at 122.012 kb on - strand at 122.393 kb on - strand, within EX28DRAFT_4141 at 122.791 kb on + strand at 122.800 kb on - strand at 122.991 kb on + strand, within EX28DRAFT_4142 at 123.052 kb on + strand, within EX28DRAFT_4142 at 123.052 kb on + strand, within EX28DRAFT_4142 at 123.052 kb on + strand, within EX28DRAFT_4142 at 123.052 kb on + strand, within EX28DRAFT_4142 at 123.132 kb on + strand, within EX28DRAFT_4142 at 123.133 kb on - strand, within EX28DRAFT_4142 at 123.133 kb on - strand, within EX28DRAFT_4142 at 123.311 kb on + strand, within EX28DRAFT_4143 at 123.312 kb on - strand, within EX28DRAFT_4143 at 123.312 kb on - strand, within EX28DRAFT_4143 at 123.420 kb on + strand, within EX28DRAFT_4143 at 123.420 kb on + strand, within EX28DRAFT_4143 at 123.421 kb on - strand, within EX28DRAFT_4143 at 123.561 kb on + strand, within EX28DRAFT_4143 at 123.684 kb on + strand, within EX28DRAFT_4143 at 123.711 kb on - strand, within EX28DRAFT_4143 at 123.723 kb on - strand, within EX28DRAFT_4143 at 123.736 kb on - strand, within EX28DRAFT_4143 at 123.750 kb on + strand, within EX28DRAFT_4143 at 123.753 kb on - strand, within EX28DRAFT_4143 at 123.753 kb on - strand, within EX28DRAFT_4143 at 123.809 kb on + strand, within EX28DRAFT_4143 at 123.810 kb on - strand, within EX28DRAFT_4143 at 123.839 kb on + strand, within EX28DRAFT_4143 at 123.840 kb on - strand, within EX28DRAFT_4143 at 123.840 kb on - strand, within EX28DRAFT_4143 at 123.843 kb on + strand, within EX28DRAFT_4143 at 123.844 kb on - strand, within EX28DRAFT_4143 at 123.895 kb on + strand at 123.895 kb on + strand at 123.895 kb on + strand at 123.896 kb on - strand at 123.965 kb on - strand at 124.025 kb on - strand at 124.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 122,011 + +0.6 122,011 + +2.0 122,011 + +0.7 122,012 - -0.4 122,012 - -0.7 122,393 - EX28DRAFT_4141 0.51 -0.1 122,791 + +1.6 122,800 - -0.3 122,991 + EX28DRAFT_4142 0.37 -0.2 123,052 + EX28DRAFT_4142 0.52 +1.2 123,052 + EX28DRAFT_4142 0.52 +0.4 123,052 + EX28DRAFT_4142 0.52 +0.2 123,052 + EX28DRAFT_4142 0.52 -0.4 123,132 + EX28DRAFT_4142 0.72 +1.6 123,133 - EX28DRAFT_4142 0.72 +2.3 123,133 - EX28DRAFT_4142 0.72 +0.0 123,311 + EX28DRAFT_4143 0.10 -0.5 123,312 - EX28DRAFT_4143 0.10 -0.5 123,312 - EX28DRAFT_4143 0.10 +0.2 123,420 + EX28DRAFT_4143 0.26 +0.1 123,420 + EX28DRAFT_4143 0.26 +0.4 123,421 - EX28DRAFT_4143 0.26 +1.9 123,561 + EX28DRAFT_4143 0.47 +0.1 123,684 + EX28DRAFT_4143 0.65 +1.7 123,711 - EX28DRAFT_4143 0.69 +0.2 123,723 - EX28DRAFT_4143 0.70 +0.1 123,736 - EX28DRAFT_4143 0.72 +0.1 123,750 + EX28DRAFT_4143 0.74 -0.1 123,753 - EX28DRAFT_4143 0.75 +0.1 123,753 - EX28DRAFT_4143 0.75 -0.1 123,809 + EX28DRAFT_4143 0.83 +0.6 123,810 - EX28DRAFT_4143 0.83 +0.5 123,839 + EX28DRAFT_4143 0.87 +0.4 123,840 - EX28DRAFT_4143 0.88 +0.3 123,840 - EX28DRAFT_4143 0.88 -2.7 123,843 + EX28DRAFT_4143 0.88 -0.2 123,844 - EX28DRAFT_4143 0.88 +0.6 123,895 + +0.1 123,895 + +0.3 123,895 + -0.4 123,896 - -0.2 123,965 - +0.4 124,025 - -0.4 124,025 - -0.3
Or see this region's nucleotide sequence