Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3901 and EX28DRAFT_3902 are separated by 2 nucleotides EX28DRAFT_3902 and EX28DRAFT_3903 are separated by 225 nucleotides
EX28DRAFT_3901: EX28DRAFT_3901 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 108,929 to 111,010
_3901
EX28DRAFT_3902: EX28DRAFT_3902 - sodium--glutamate symport carrier (gltS), at 111,013 to 112,215
_3902
EX28DRAFT_3903: EX28DRAFT_3903 - uracil-xanthine permease, at 112,441 to 113,832
_3903
Position (kb) 111
112
113 Strain fitness (log2 ratio) -2
-1
0
1
2 at 110.027 kb on - strand, within EX28DRAFT_3901 at 110.256 kb on + strand, within EX28DRAFT_3901 at 110.257 kb on - strand, within EX28DRAFT_3901 at 110.260 kb on + strand, within EX28DRAFT_3901 at 110.399 kb on - strand, within EX28DRAFT_3901 at 110.399 kb on - strand, within EX28DRAFT_3901 at 110.462 kb on - strand, within EX28DRAFT_3901 at 111.038 kb on + strand at 111.039 kb on - strand at 111.218 kb on + strand, within EX28DRAFT_3902 at 111.583 kb on - strand, within EX28DRAFT_3902 at 111.583 kb on - strand, within EX28DRAFT_3902 at 111.583 kb on - strand, within EX28DRAFT_3902 at 112.026 kb on + strand, within EX28DRAFT_3902 at 112.026 kb on + strand, within EX28DRAFT_3902 at 112.026 kb on + strand, within EX28DRAFT_3902 at 112.027 kb on - strand, within EX28DRAFT_3902 at 112.027 kb on - strand, within EX28DRAFT_3902 at 112.215 kb on + strand at 112.216 kb on - strand at 112.216 kb on - strand at 112.244 kb on + strand at 112.330 kb on - strand at 112.457 kb on + strand at 112.457 kb on + strand at 112.653 kb on + strand, within EX28DRAFT_3903 at 112.701 kb on + strand, within EX28DRAFT_3903 at 112.731 kb on - strand, within EX28DRAFT_3903 at 112.756 kb on - strand, within EX28DRAFT_3903 at 112.756 kb on - strand, within EX28DRAFT_3903 at 113.067 kb on + strand, within EX28DRAFT_3903 at 113.067 kb on + strand, within EX28DRAFT_3903 at 113.068 kb on - strand, within EX28DRAFT_3903
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 110,027 - EX28DRAFT_3901 0.53 -0.2 110,256 + EX28DRAFT_3901 0.64 -0.2 110,257 - EX28DRAFT_3901 0.64 -0.4 110,260 + EX28DRAFT_3901 0.64 -2.0 110,399 - EX28DRAFT_3901 0.71 -0.6 110,399 - EX28DRAFT_3901 0.71 -1.7 110,462 - EX28DRAFT_3901 0.74 -0.3 111,038 + +0.7 111,039 - -0.1 111,218 + EX28DRAFT_3902 0.17 +0.2 111,583 - EX28DRAFT_3902 0.47 +1.3 111,583 - EX28DRAFT_3902 0.47 -0.3 111,583 - EX28DRAFT_3902 0.47 +0.3 112,026 + EX28DRAFT_3902 0.84 +0.5 112,026 + EX28DRAFT_3902 0.84 +0.5 112,026 + EX28DRAFT_3902 0.84 -0.6 112,027 - EX28DRAFT_3902 0.84 -0.1 112,027 - EX28DRAFT_3902 0.84 +2.2 112,215 + -0.2 112,216 - -1.3 112,216 - +0.8 112,244 + +0.4 112,330 - +0.2 112,457 + +0.4 112,457 + +0.2 112,653 + EX28DRAFT_3903 0.15 -0.2 112,701 + EX28DRAFT_3903 0.19 -0.1 112,731 - EX28DRAFT_3903 0.21 -0.0 112,756 - EX28DRAFT_3903 0.23 +0.2 112,756 - EX28DRAFT_3903 0.23 -0.3 113,067 + EX28DRAFT_3903 0.45 +1.4 113,067 + EX28DRAFT_3903 0.45 +0.3 113,068 - EX28DRAFT_3903 0.45 -0.2
Or see this region's nucleotide sequence