Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3854

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3853 and EX28DRAFT_3854 overlap by 4 nucleotidesEX28DRAFT_3854 and EX28DRAFT_3855 overlap by 4 nucleotides EX28DRAFT_3853: EX28DRAFT_3853 - L-lactate transport, at 62,585 to 64,240 _3853 EX28DRAFT_3854: EX28DRAFT_3854 - Transcriptional regulators, at 64,237 to 65,010 _3854 EX28DRAFT_3855: EX28DRAFT_3855 - L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases, at 65,007 to 66,194 _3855 Position (kb) 64 65 66Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 63.399 kb on + strand, within EX28DRAFT_3853at 63.404 kb on - strand, within EX28DRAFT_3853at 63.404 kb on - strand, within EX28DRAFT_3853at 63.663 kb on - strand, within EX28DRAFT_3853at 63.790 kb on + strand, within EX28DRAFT_3853at 63.791 kb on - strand, within EX28DRAFT_3853at 63.812 kb on + strand, within EX28DRAFT_3853at 63.855 kb on - strand, within EX28DRAFT_3853at 64.215 kb on - strandat 64.221 kb on + strandat 64.241 kb on + strandat 64.241 kb on + strandat 64.242 kb on - strandat 64.526 kb on - strand, within EX28DRAFT_3854at 64.792 kb on + strand, within EX28DRAFT_3854at 64.793 kb on - strand, within EX28DRAFT_3854at 64.959 kb on + strandat 64.959 kb on + strandat 64.987 kb on - strandat 65.012 kb on + strandat 65.012 kb on + strandat 65.012 kb on + strandat 65.012 kb on + strandat 65.076 kb on + strandat 65.076 kb on + strandat 65.076 kb on + strandat 65.168 kb on + strand, within EX28DRAFT_3855at 65.168 kb on + strand, within EX28DRAFT_3855at 65.245 kb on + strand, within EX28DRAFT_3855at 65.256 kb on + strand, within EX28DRAFT_3855at 65.257 kb on - strand, within EX28DRAFT_3855at 65.257 kb on - strand, within EX28DRAFT_3855at 65.315 kb on + strand, within EX28DRAFT_3855at 65.392 kb on - strand, within EX28DRAFT_3855at 65.415 kb on - strand, within EX28DRAFT_3855at 65.664 kb on + strand, within EX28DRAFT_3855at 65.665 kb on - strand, within EX28DRAFT_3855at 65.957 kb on + strand, within EX28DRAFT_3855at 65.958 kb on - strand, within EX28DRAFT_3855at 65.983 kb on + strand, within EX28DRAFT_3855at 65.984 kb on - strand, within EX28DRAFT_3855at 66.000 kb on + strand, within EX28DRAFT_3855at 66.001 kb on - strand, within EX28DRAFT_3855at 66.001 kb on - strand, within EX28DRAFT_3855

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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63,399 + EX28DRAFT_3853 0.49 -0.3
63,404 - EX28DRAFT_3853 0.49 -0.1
63,404 - EX28DRAFT_3853 0.49 -0.8
63,663 - EX28DRAFT_3853 0.65 +0.9
63,790 + EX28DRAFT_3853 0.73 -0.3
63,791 - EX28DRAFT_3853 0.73 -0.6
63,812 + EX28DRAFT_3853 0.74 -0.3
63,855 - EX28DRAFT_3853 0.77 +0.2
64,215 - +1.1
64,221 + +2.1
64,241 + -0.4
64,241 + +1.1
64,242 - -0.2
64,526 - EX28DRAFT_3854 0.37 +0.1
64,792 + EX28DRAFT_3854 0.72 +0.1
64,793 - EX28DRAFT_3854 0.72 +1.1
64,959 + -0.2
64,959 + +2.7
64,987 - +0.6
65,012 + -0.0
65,012 + -0.6
65,012 + +0.2
65,012 + -0.2
65,076 + +0.5
65,076 + -0.2
65,076 + -0.2
65,168 + EX28DRAFT_3855 0.14 +0.2
65,168 + EX28DRAFT_3855 0.14 -0.2
65,245 + EX28DRAFT_3855 0.20 -0.5
65,256 + EX28DRAFT_3855 0.21 -4.7
65,257 - EX28DRAFT_3855 0.21 +0.4
65,257 - EX28DRAFT_3855 0.21 +0.2
65,315 + EX28DRAFT_3855 0.26 -0.6
65,392 - EX28DRAFT_3855 0.32 -0.1
65,415 - EX28DRAFT_3855 0.34 -0.6
65,664 + EX28DRAFT_3855 0.55 +0.2
65,665 - EX28DRAFT_3855 0.55 -0.3
65,957 + EX28DRAFT_3855 0.80 +0.2
65,958 - EX28DRAFT_3855 0.80 -0.1
65,983 + EX28DRAFT_3855 0.82 -1.1
65,984 - EX28DRAFT_3855 0.82 +0.5
66,000 + EX28DRAFT_3855 0.84 +0.3
66,001 - EX28DRAFT_3855 0.84 +0.1
66,001 - EX28DRAFT_3855 0.84 -0.0

Or see this region's nucleotide sequence