Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3237 and EX28DRAFT_3238 are separated by 15 nucleotides EX28DRAFT_3238 and EX28DRAFT_3239 are separated by 96 nucleotides EX28DRAFT_3239 and EX28DRAFT_3240 are separated by 19 nucleotides EX28DRAFT_3240 and EX28DRAFT_3241 are separated by 257 nucleotides
EX28DRAFT_3237: EX28DRAFT_3237 - Obg family GTPase CgtA, at 534,037 to 535,212
_3237
EX28DRAFT_3238: EX28DRAFT_3238 - Predicted permeases, at 535,228 to 536,193
_3238
EX28DRAFT_3239: EX28DRAFT_3239 - ribosomal protein L27, at 536,290 to 536,547
_3239
EX28DRAFT_3240: EX28DRAFT_3240 - ribosomal protein L21, at 536,567 to 536,878
_3240
EX28DRAFT_3241: EX28DRAFT_3241 - Geranylgeranyl pyrophosphate synthase, at 537,136 to 538,107
_3241
Position (kb) 535
536
537 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 535.250 kb on - strand at 535.253 kb on - strand at 535.420 kb on - strand, within EX28DRAFT_3238 at 535.432 kb on - strand, within EX28DRAFT_3238 at 535.442 kb on - strand, within EX28DRAFT_3238 at 535.595 kb on - strand, within EX28DRAFT_3238 at 535.652 kb on - strand, within EX28DRAFT_3238 at 535.652 kb on - strand, within EX28DRAFT_3238 at 535.674 kb on - strand, within EX28DRAFT_3238 at 535.674 kb on - strand, within EX28DRAFT_3238 at 535.712 kb on - strand, within EX28DRAFT_3238 at 535.725 kb on - strand, within EX28DRAFT_3238 at 535.883 kb on - strand, within EX28DRAFT_3238 at 536.020 kb on - strand, within EX28DRAFT_3238 at 536.020 kb on - strand, within EX28DRAFT_3238 at 536.029 kb on - strand, within EX28DRAFT_3238 at 537.029 kb on + strand at 537.061 kb on + strand at 537.061 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 535,250 - -0.3 535,253 - -0.2 535,420 - EX28DRAFT_3238 0.20 -1.0 535,432 - EX28DRAFT_3238 0.21 +0.2 535,442 - EX28DRAFT_3238 0.22 +0.0 535,595 - EX28DRAFT_3238 0.38 +0.4 535,652 - EX28DRAFT_3238 0.44 -0.0 535,652 - EX28DRAFT_3238 0.44 +0.3 535,674 - EX28DRAFT_3238 0.46 -0.1 535,674 - EX28DRAFT_3238 0.46 +1.3 535,712 - EX28DRAFT_3238 0.50 +0.7 535,725 - EX28DRAFT_3238 0.51 +0.6 535,883 - EX28DRAFT_3238 0.68 +0.4 536,020 - EX28DRAFT_3238 0.82 +1.3 536,020 - EX28DRAFT_3238 0.82 +3.6 536,029 - EX28DRAFT_3238 0.83 +0.3 537,029 + -4.2 537,061 + +0.2 537,061 + -0.8
Or see this region's nucleotide sequence