Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2868 and EX28DRAFT_2869 are separated by 15 nucleotides EX28DRAFT_2869 and EX28DRAFT_2870 overlap by 1 nucleotides
EX28DRAFT_2868: EX28DRAFT_2868 - glucarate dehydratase, at 174,546 to 175,883
_2868
EX28DRAFT_2869: EX28DRAFT_2869 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 175,899 to 177,239
_2869
EX28DRAFT_2870: EX28DRAFT_2870 - D-galactonate transporter, at 177,239 to 178,594
_2870
Position (kb) 175
176
177
178 Strain fitness (log2 ratio) -2
-1
0
1
2 at 175.284 kb on - strand, within EX28DRAFT_2868 at 175.291 kb on + strand, within EX28DRAFT_2868 at 175.439 kb on - strand, within EX28DRAFT_2868 at 175.623 kb on - strand, within EX28DRAFT_2868 at 175.770 kb on - strand at 175.877 kb on + strand at 175.947 kb on + strand at 175.954 kb on + strand at 175.954 kb on + strand at 176.001 kb on - strand at 176.376 kb on - strand, within EX28DRAFT_2869 at 176.785 kb on + strand, within EX28DRAFT_2869 at 176.786 kb on - strand, within EX28DRAFT_2869 at 176.795 kb on - strand, within EX28DRAFT_2869 at 176.951 kb on + strand, within EX28DRAFT_2869 at 176.951 kb on + strand, within EX28DRAFT_2869 at 177.058 kb on + strand, within EX28DRAFT_2869 at 177.059 kb on - strand, within EX28DRAFT_2869 at 177.126 kb on - strand at 177.126 kb on - strand at 177.262 kb on + strand at 177.336 kb on + strand at 177.336 kb on + strand at 177.378 kb on + strand, within EX28DRAFT_2870 at 177.398 kb on - strand, within EX28DRAFT_2870 at 177.561 kb on + strand, within EX28DRAFT_2870 at 177.561 kb on + strand, within EX28DRAFT_2870 at 177.616 kb on + strand, within EX28DRAFT_2870 at 177.617 kb on - strand, within EX28DRAFT_2870 at 177.762 kb on + strand, within EX28DRAFT_2870 at 177.762 kb on + strand, within EX28DRAFT_2870 at 177.763 kb on - strand, within EX28DRAFT_2870 at 177.790 kb on - strand, within EX28DRAFT_2870 at 177.806 kb on - strand, within EX28DRAFT_2870 at 177.806 kb on - strand, within EX28DRAFT_2870 at 177.822 kb on + strand, within EX28DRAFT_2870 at 177.823 kb on - strand, within EX28DRAFT_2870 at 177.823 kb on - strand, within EX28DRAFT_2870 at 177.839 kb on - strand, within EX28DRAFT_2870 at 177.916 kb on + strand, within EX28DRAFT_2870 at 177.917 kb on - strand, within EX28DRAFT_2870 at 177.917 kb on - strand, within EX28DRAFT_2870 at 177.917 kb on - strand, within EX28DRAFT_2870 at 177.917 kb on - strand, within EX28DRAFT_2870 at 177.946 kb on - strand, within EX28DRAFT_2870
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 175,284 - EX28DRAFT_2868 0.55 -0.0 175,291 + EX28DRAFT_2868 0.56 +0.9 175,439 - EX28DRAFT_2868 0.67 +0.0 175,623 - EX28DRAFT_2868 0.80 -0.1 175,770 - -1.4 175,877 + +0.1 175,947 + +0.1 175,954 + +0.4 175,954 + -0.8 176,001 - +0.3 176,376 - EX28DRAFT_2869 0.36 +1.0 176,785 + EX28DRAFT_2869 0.66 +0.6 176,786 - EX28DRAFT_2869 0.66 +0.6 176,795 - EX28DRAFT_2869 0.67 +1.5 176,951 + EX28DRAFT_2869 0.78 -0.1 176,951 + EX28DRAFT_2869 0.78 +0.2 177,058 + EX28DRAFT_2869 0.86 +0.7 177,059 - EX28DRAFT_2869 0.87 -0.4 177,126 - -0.3 177,126 - +0.1 177,262 + +0.0 177,336 + -0.2 177,336 + -0.8 177,378 + EX28DRAFT_2870 0.10 +0.8 177,398 - EX28DRAFT_2870 0.12 -0.3 177,561 + EX28DRAFT_2870 0.24 -0.1 177,561 + EX28DRAFT_2870 0.24 +0.1 177,616 + EX28DRAFT_2870 0.28 -0.5 177,617 - EX28DRAFT_2870 0.28 +0.3 177,762 + EX28DRAFT_2870 0.39 -0.2 177,762 + EX28DRAFT_2870 0.39 -0.1 177,763 - EX28DRAFT_2870 0.39 +0.6 177,790 - EX28DRAFT_2870 0.41 -0.2 177,806 - EX28DRAFT_2870 0.42 +0.0 177,806 - EX28DRAFT_2870 0.42 -0.6 177,822 + EX28DRAFT_2870 0.43 +0.1 177,823 - EX28DRAFT_2870 0.43 +0.3 177,823 - EX28DRAFT_2870 0.43 +2.4 177,839 - EX28DRAFT_2870 0.44 +0.0 177,916 + EX28DRAFT_2870 0.50 -0.3 177,917 - EX28DRAFT_2870 0.50 -0.9 177,917 - EX28DRAFT_2870 0.50 +0.5 177,917 - EX28DRAFT_2870 0.50 -0.4 177,917 - EX28DRAFT_2870 0.50 +0.4 177,946 - EX28DRAFT_2870 0.52 -2.0
Or see this region's nucleotide sequence