Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0681

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0680 and EX28DRAFT_0681 overlap by 8 nucleotidesEX28DRAFT_0681 and EX28DRAFT_0682 overlap by 1 nucleotidesEX28DRAFT_0682 and EX28DRAFT_0683 are separated by 58 nucleotides EX28DRAFT_0680: EX28DRAFT_0680 - flagellar biosynthetic protein FlhB, at 677,682 to 678,830 _0680 EX28DRAFT_0681: EX28DRAFT_0681 - flagellar biosynthesis protein FlhA, at 678,823 to 680,901 _0681 EX28DRAFT_0682: EX28DRAFT_0682 - Flagellar protein FlhE, at 680,901 to 681,293 _0682 EX28DRAFT_0683: EX28DRAFT_0683 - arginyl-tRNA synthetase (EC 6.1.1.19), at 681,352 to 683,085 _0683 Position (kb) 678 679 680 681Strain fitness (log2 ratio) -2 -1 0 1 2at 677.925 kb on - strand, within EX28DRAFT_0680at 677.925 kb on - strand, within EX28DRAFT_0680at 677.933 kb on + strand, within EX28DRAFT_0680at 677.934 kb on - strand, within EX28DRAFT_0680at 677.934 kb on - strand, within EX28DRAFT_0680at 678.165 kb on + strand, within EX28DRAFT_0680at 678.166 kb on - strand, within EX28DRAFT_0680at 678.166 kb on - strand, within EX28DRAFT_0680at 678.175 kb on - strand, within EX28DRAFT_0680at 678.201 kb on - strand, within EX28DRAFT_0680at 678.318 kb on + strand, within EX28DRAFT_0680at 678.319 kb on - strand, within EX28DRAFT_0680at 678.319 kb on - strand, within EX28DRAFT_0680at 678.319 kb on - strand, within EX28DRAFT_0680at 678.319 kb on - strand, within EX28DRAFT_0680at 678.320 kb on + strand, within EX28DRAFT_0680at 678.321 kb on - strand, within EX28DRAFT_0680at 678.369 kb on + strand, within EX28DRAFT_0680at 678.370 kb on - strand, within EX28DRAFT_0680at 678.371 kb on + strand, within EX28DRAFT_0680at 678.371 kb on + strand, within EX28DRAFT_0680at 678.371 kb on + strand, within EX28DRAFT_0680at 678.372 kb on - strand, within EX28DRAFT_0680at 678.372 kb on - strand, within EX28DRAFT_0680at 678.372 kb on - strand, within EX28DRAFT_0680at 678.372 kb on - strand, within EX28DRAFT_0680at 678.398 kb on - strand, within EX28DRAFT_0680at 678.495 kb on + strand, within EX28DRAFT_0680at 678.496 kb on - strand, within EX28DRAFT_0680at 678.688 kb on - strand, within EX28DRAFT_0680at 678.911 kb on + strandat 678.912 kb on - strandat 678.976 kb on - strandat 678.976 kb on - strandat 679.062 kb on + strand, within EX28DRAFT_0681at 679.104 kb on + strand, within EX28DRAFT_0681at 679.147 kb on - strand, within EX28DRAFT_0681at 679.236 kb on + strand, within EX28DRAFT_0681at 679.237 kb on - strand, within EX28DRAFT_0681at 679.237 kb on - strand, within EX28DRAFT_0681at 679.243 kb on - strand, within EX28DRAFT_0681at 679.347 kb on + strand, within EX28DRAFT_0681at 679.347 kb on + strand, within EX28DRAFT_0681at 679.348 kb on - strand, within EX28DRAFT_0681at 679.406 kb on - strand, within EX28DRAFT_0681at 679.406 kb on - strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.509 kb on - strand, within EX28DRAFT_0681at 679.509 kb on - strand, within EX28DRAFT_0681at 679.546 kb on + strand, within EX28DRAFT_0681at 679.548 kb on + strand, within EX28DRAFT_0681at 679.771 kb on - strand, within EX28DRAFT_0681at 679.872 kb on - strand, within EX28DRAFT_0681at 680.053 kb on - strand, within EX28DRAFT_0681at 680.259 kb on + strand, within EX28DRAFT_0681at 680.259 kb on + strand, within EX28DRAFT_0681at 680.260 kb on - strand, within EX28DRAFT_0681at 680.260 kb on - strand, within EX28DRAFT_0681at 680.277 kb on + strand, within EX28DRAFT_0681at 680.278 kb on - strand, within EX28DRAFT_0681at 680.278 kb on - strand, within EX28DRAFT_0681at 680.298 kb on + strand, within EX28DRAFT_0681at 680.298 kb on + strand, within EX28DRAFT_0681at 680.299 kb on - strand, within EX28DRAFT_0681at 680.299 kb on - strand, within EX28DRAFT_0681at 680.299 kb on - strand, within EX28DRAFT_0681at 680.555 kb on + strand, within EX28DRAFT_0681at 680.907 kb on - strandat 681.353 kb on + strandat 681.353 kb on + strandat 681.353 kb on + strandat 681.353 kb on + strandat 681.354 kb on - strandat 681.354 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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677,925 - EX28DRAFT_0680 0.21 +0.9
677,925 - EX28DRAFT_0680 0.21 +0.8
677,933 + EX28DRAFT_0680 0.22 +0.9
677,934 - EX28DRAFT_0680 0.22 +0.6
677,934 - EX28DRAFT_0680 0.22 +1.3
678,165 + EX28DRAFT_0680 0.42 +0.8
678,166 - EX28DRAFT_0680 0.42 +0.4
678,166 - EX28DRAFT_0680 0.42 -0.0
678,175 - EX28DRAFT_0680 0.43 +0.9
678,201 - EX28DRAFT_0680 0.45 +0.2
678,318 + EX28DRAFT_0680 0.55 +0.3
678,319 - EX28DRAFT_0680 0.55 -1.9
678,319 - EX28DRAFT_0680 0.55 +1.4
678,319 - EX28DRAFT_0680 0.55 +1.7
678,319 - EX28DRAFT_0680 0.55 +0.6
678,320 + EX28DRAFT_0680 0.56 +0.4
678,321 - EX28DRAFT_0680 0.56 +0.0
678,369 + EX28DRAFT_0680 0.60 +0.7
678,370 - EX28DRAFT_0680 0.60 +1.0
678,371 + EX28DRAFT_0680 0.60 +0.7
678,371 + EX28DRAFT_0680 0.60 +1.5
678,371 + EX28DRAFT_0680 0.60 +0.8
678,372 - EX28DRAFT_0680 0.60 +0.6
678,372 - EX28DRAFT_0680 0.60 -0.0
678,372 - EX28DRAFT_0680 0.60 +0.0
678,372 - EX28DRAFT_0680 0.60 +1.2
678,398 - EX28DRAFT_0680 0.62 +1.6
678,495 + EX28DRAFT_0680 0.71 +1.2
678,496 - EX28DRAFT_0680 0.71 +1.5
678,688 - EX28DRAFT_0680 0.88 +1.1
678,911 + -0.0
678,912 - +0.6
678,976 - +1.5
678,976 - +0.1
679,062 + EX28DRAFT_0681 0.11 +1.0
679,104 + EX28DRAFT_0681 0.14 +1.1
679,147 - EX28DRAFT_0681 0.16 +0.5
679,236 + EX28DRAFT_0681 0.20 +1.0
679,237 - EX28DRAFT_0681 0.20 +0.9
679,237 - EX28DRAFT_0681 0.20 +0.0
679,243 - EX28DRAFT_0681 0.20 +0.3
679,347 + EX28DRAFT_0681 0.25 +0.6
679,347 + EX28DRAFT_0681 0.25 +1.1
679,348 - EX28DRAFT_0681 0.25 +0.6
679,406 - EX28DRAFT_0681 0.28 +1.1
679,406 - EX28DRAFT_0681 0.28 +0.5
679,508 + EX28DRAFT_0681 0.33 +0.6
679,508 + EX28DRAFT_0681 0.33 -0.8
679,508 + EX28DRAFT_0681 0.33 +0.9
679,508 + EX28DRAFT_0681 0.33 +0.8
679,508 + EX28DRAFT_0681 0.33 +0.5
679,509 - EX28DRAFT_0681 0.33 +1.6
679,509 - EX28DRAFT_0681 0.33 +0.5
679,546 + EX28DRAFT_0681 0.35 +0.1
679,548 + EX28DRAFT_0681 0.35 +0.6
679,771 - EX28DRAFT_0681 0.46 +0.2
679,872 - EX28DRAFT_0681 0.50 +0.1
680,053 - EX28DRAFT_0681 0.59 +0.8
680,259 + EX28DRAFT_0681 0.69 +1.0
680,259 + EX28DRAFT_0681 0.69 +1.1
680,260 - EX28DRAFT_0681 0.69 +0.5
680,260 - EX28DRAFT_0681 0.69 +1.3
680,277 + EX28DRAFT_0681 0.70 -0.7
680,278 - EX28DRAFT_0681 0.70 +0.7
680,278 - EX28DRAFT_0681 0.70 +1.7
680,298 + EX28DRAFT_0681 0.71 +1.1
680,298 + EX28DRAFT_0681 0.71 +0.9
680,299 - EX28DRAFT_0681 0.71 +0.5
680,299 - EX28DRAFT_0681 0.71 +0.9
680,299 - EX28DRAFT_0681 0.71 +2.1
680,555 + EX28DRAFT_0681 0.83 +1.1
680,907 - -0.8
681,353 + -0.6
681,353 + +0.8
681,353 + -0.0
681,353 + -0.2
681,354 - -2.3
681,354 - +0.3

Or see this region's nucleotide sequence