Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0658 and EX28DRAFT_0659 are separated by 2 nucleotides EX28DRAFT_0659 and EX28DRAFT_0660 are separated by 123 nucleotides
EX28DRAFT_0658: EX28DRAFT_0658 - Flagellar transcriptional activator (FlhD), at 653,152 to 653,502
_0658
EX28DRAFT_0659: EX28DRAFT_0659 - Flagellar transcriptional activator (FlhC), at 653,505 to 654,083
_0659
EX28DRAFT_0660: EX28DRAFT_0660 - flagellar motor stator protein MotA, at 654,207 to 655,094
_0660
Position (kb) 653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 652.641 kb on + strand at 652.643 kb on + strand at 652.691 kb on + strand at 652.692 kb on - strand at 652.775 kb on + strand at 652.909 kb on + strand at 652.909 kb on + strand at 652.909 kb on + strand at 652.909 kb on + strand at 652.909 kb on + strand at 652.909 kb on + strand at 652.910 kb on - strand at 652.910 kb on - strand at 652.910 kb on - strand at 652.958 kb on + strand at 652.962 kb on + strand at 652.962 kb on + strand at 652.987 kb on + strand at 652.988 kb on - strand at 652.988 kb on - strand at 653.015 kb on - strand at 653.029 kb on + strand at 653.030 kb on - strand at 653.030 kb on - strand at 653.047 kb on + strand at 653.048 kb on - strand at 653.055 kb on + strand at 653.055 kb on + strand at 653.124 kb on + strand at 653.127 kb on + strand at 653.127 kb on + strand at 653.127 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.158 kb on - strand at 653.158 kb on - strand at 653.158 kb on - strand at 653.171 kb on + strand at 653.171 kb on + strand at 653.171 kb on + strand at 653.171 kb on + strand at 653.178 kb on + strand at 653.178 kb on + strand at 653.178 kb on + strand at 653.179 kb on - strand at 653.179 kb on - strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.183 kb on - strand at 653.183 kb on - strand at 653.183 kb on - strand at 653.183 kb on - strand at 653.201 kb on - strand, within EX28DRAFT_0658 at 653.204 kb on + strand, within EX28DRAFT_0658 at 653.204 kb on + strand, within EX28DRAFT_0658 at 653.205 kb on - strand, within EX28DRAFT_0658 at 653.227 kb on - strand, within EX28DRAFT_0658 at 653.227 kb on - strand, within EX28DRAFT_0658 at 653.500 kb on + strand at 653.542 kb on + strand at 653.542 kb on + strand at 653.542 kb on + strand at 653.542 kb on + strand at 653.542 kb on + strand at 653.542 kb on + strand at 653.564 kb on + strand, within EX28DRAFT_0659 at 653.581 kb on + strand, within EX28DRAFT_0659 at 653.634 kb on + strand, within EX28DRAFT_0659 at 653.635 kb on - strand, within EX28DRAFT_0659 at 653.645 kb on - strand, within EX28DRAFT_0659 at 653.651 kb on + strand, within EX28DRAFT_0659 at 653.652 kb on - strand, within EX28DRAFT_0659 at 653.697 kb on - strand, within EX28DRAFT_0659 at 653.735 kb on + strand, within EX28DRAFT_0659 at 653.736 kb on - strand, within EX28DRAFT_0659 at 653.736 kb on - strand, within EX28DRAFT_0659 at 653.748 kb on + strand, within EX28DRAFT_0659 at 653.749 kb on - strand, within EX28DRAFT_0659 at 653.749 kb on - strand, within EX28DRAFT_0659 at 653.749 kb on - strand, within EX28DRAFT_0659 at 653.749 kb on - strand, within EX28DRAFT_0659 at 653.749 kb on - strand, within EX28DRAFT_0659 at 653.800 kb on - strand, within EX28DRAFT_0659 at 653.808 kb on + strand, within EX28DRAFT_0659 at 653.809 kb on - strand, within EX28DRAFT_0659 at 653.809 kb on - strand, within EX28DRAFT_0659 at 653.936 kb on + strand, within EX28DRAFT_0659 at 653.936 kb on + strand, within EX28DRAFT_0659 at 653.936 kb on + strand, within EX28DRAFT_0659 at 653.937 kb on - strand, within EX28DRAFT_0659 at 653.976 kb on - strand, within EX28DRAFT_0659 at 653.976 kb on - strand, within EX28DRAFT_0659 at 653.980 kb on + strand, within EX28DRAFT_0659 at 653.980 kb on + strand, within EX28DRAFT_0659 at 653.981 kb on - strand, within EX28DRAFT_0659 at 654.004 kb on + strand, within EX28DRAFT_0659 at 654.014 kb on + strand, within EX28DRAFT_0659 at 654.041 kb on + strand at 654.123 kb on + strand at 654.123 kb on + strand at 654.182 kb on + strand at 654.213 kb on - strand at 654.213 kb on - strand at 654.218 kb on - strand at 654.220 kb on + strand at 654.220 kb on + strand at 654.220 kb on + strand at 654.221 kb on - strand at 654.221 kb on - strand at 654.232 kb on + strand at 654.232 kb on + strand at 654.258 kb on + strand at 654.291 kb on + strand at 654.292 kb on - strand at 654.292 kb on - strand at 654.308 kb on + strand, within EX28DRAFT_0660 at 654.309 kb on - strand, within EX28DRAFT_0660 at 654.309 kb on - strand, within EX28DRAFT_0660 at 654.311 kb on + strand, within EX28DRAFT_0660 at 654.342 kb on - strand, within EX28DRAFT_0660 at 654.359 kb on + strand, within EX28DRAFT_0660 at 654.360 kb on - strand, within EX28DRAFT_0660 at 654.414 kb on + strand, within EX28DRAFT_0660 at 654.414 kb on + strand, within EX28DRAFT_0660 at 654.425 kb on + strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.431 kb on + strand, within EX28DRAFT_0660 at 654.431 kb on + strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.510 kb on + strand, within EX28DRAFT_0660 at 654.544 kb on - strand, within EX28DRAFT_0660 at 654.623 kb on + strand, within EX28DRAFT_0660 at 654.624 kb on - strand, within EX28DRAFT_0660 at 654.624 kb on - strand, within EX28DRAFT_0660 at 654.843 kb on - strand, within EX28DRAFT_0660 at 654.992 kb on + strand, within EX28DRAFT_0660
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 652,641 + -0.4 652,643 + -1.1 652,691 + -1.1 652,692 - -1.0 652,775 + -1.3 652,909 + +1.0 652,909 + -1.0 652,909 + +1.6 652,909 + +1.3 652,909 + +0.7 652,909 + -0.3 652,910 - +0.6 652,910 - +0.5 652,910 - -0.0 652,958 + +1.0 652,962 + +1.2 652,962 + +1.2 652,987 + +1.1 652,988 - -1.3 652,988 - -0.2 653,015 - +0.4 653,029 + +1.1 653,030 - -0.4 653,030 - +0.3 653,047 + +1.4 653,048 - -0.4 653,055 + +1.3 653,055 + +0.9 653,124 + +1.8 653,127 + +1.1 653,127 + +0.3 653,127 + -0.1 653,157 + +0.7 653,157 + +0.2 653,157 + +1.5 653,157 + +3.0 653,157 + +0.7 653,157 + +1.1 653,157 + +0.6 653,157 + +1.0 653,157 + +0.8 653,157 + +0.4 653,157 + +1.1 653,158 - -0.0 653,158 - +0.3 653,158 - +1.0 653,171 + +1.5 653,171 + +0.3 653,171 + -0.2 653,171 + +1.0 653,178 + +1.3 653,178 + +1.6 653,178 + +1.1 653,179 - +0.9 653,179 - +0.8 653,182 + +1.5 653,182 + +1.8 653,182 + +0.8 653,182 + +1.9 653,182 + +0.7 653,182 + +1.5 653,182 + +0.4 653,182 + +0.7 653,183 - +1.0 653,183 - -1.4 653,183 - +1.7 653,183 - +0.5 653,201 - EX28DRAFT_0658 0.14 +0.6 653,204 + EX28DRAFT_0658 0.15 +1.6 653,204 + EX28DRAFT_0658 0.15 +2.6 653,205 - EX28DRAFT_0658 0.15 -0.9 653,227 - EX28DRAFT_0658 0.21 -0.9 653,227 - EX28DRAFT_0658 0.21 -1.9 653,500 + +0.9 653,542 + +0.8 653,542 + +1.6 653,542 + +1.3 653,542 + +0.7 653,542 + +1.2 653,542 + +2.2 653,564 + EX28DRAFT_0659 0.10 +1.2 653,581 + EX28DRAFT_0659 0.13 +0.4 653,634 + EX28DRAFT_0659 0.22 +3.5 653,635 - EX28DRAFT_0659 0.22 -0.1 653,645 - EX28DRAFT_0659 0.24 -0.2 653,651 + EX28DRAFT_0659 0.25 +1.0 653,652 - EX28DRAFT_0659 0.25 +0.5 653,697 - EX28DRAFT_0659 0.33 -0.7 653,735 + EX28DRAFT_0659 0.40 +2.0 653,736 - EX28DRAFT_0659 0.40 -0.3 653,736 - EX28DRAFT_0659 0.40 -0.3 653,748 + EX28DRAFT_0659 0.42 +0.1 653,749 - EX28DRAFT_0659 0.42 +0.1 653,749 - EX28DRAFT_0659 0.42 -0.3 653,749 - EX28DRAFT_0659 0.42 +0.5 653,749 - EX28DRAFT_0659 0.42 +0.7 653,749 - EX28DRAFT_0659 0.42 +1.3 653,800 - EX28DRAFT_0659 0.51 +0.9 653,808 + EX28DRAFT_0659 0.52 +1.4 653,809 - EX28DRAFT_0659 0.53 +0.6 653,809 - EX28DRAFT_0659 0.53 +1.8 653,936 + EX28DRAFT_0659 0.74 +1.2 653,936 + EX28DRAFT_0659 0.74 -1.3 653,936 + EX28DRAFT_0659 0.74 +1.0 653,937 - EX28DRAFT_0659 0.75 -0.2 653,976 - EX28DRAFT_0659 0.81 +0.4 653,976 - EX28DRAFT_0659 0.81 +0.7 653,980 + EX28DRAFT_0659 0.82 +1.3 653,980 + EX28DRAFT_0659 0.82 +1.4 653,981 - EX28DRAFT_0659 0.82 +0.7 654,004 + EX28DRAFT_0659 0.86 +0.5 654,014 + EX28DRAFT_0659 0.88 -0.4 654,041 + +0.1 654,123 + +0.9 654,123 + -0.4 654,182 + +0.3 654,213 - +0.6 654,213 - -2.9 654,218 - +0.5 654,220 + +0.1 654,220 + +1.4 654,220 + +1.1 654,221 - -0.4 654,221 - +2.0 654,232 + +0.6 654,232 + +0.3 654,258 + +0.5 654,291 + -0.1 654,292 - -0.1 654,292 - -0.8 654,308 + EX28DRAFT_0660 0.11 +0.0 654,309 - EX28DRAFT_0660 0.11 +1.8 654,309 - EX28DRAFT_0660 0.11 -0.1 654,311 + EX28DRAFT_0660 0.12 +0.3 654,342 - EX28DRAFT_0660 0.15 -0.3 654,359 + EX28DRAFT_0660 0.17 +1.3 654,360 - EX28DRAFT_0660 0.17 -0.8 654,414 + EX28DRAFT_0660 0.23 +0.6 654,414 + EX28DRAFT_0660 0.23 -0.0 654,425 + EX28DRAFT_0660 0.25 +0.4 654,426 - EX28DRAFT_0660 0.25 +1.7 654,426 - EX28DRAFT_0660 0.25 -0.6 654,426 - EX28DRAFT_0660 0.25 -0.2 654,426 - EX28DRAFT_0660 0.25 +0.5 654,426 - EX28DRAFT_0660 0.25 -0.3 654,429 + EX28DRAFT_0660 0.25 -0.9 654,429 + EX28DRAFT_0660 0.25 +0.9 654,429 + EX28DRAFT_0660 0.25 -0.7 654,429 + EX28DRAFT_0660 0.25 +0.4 654,430 - EX28DRAFT_0660 0.25 +0.3 654,430 - EX28DRAFT_0660 0.25 +0.8 654,430 - EX28DRAFT_0660 0.25 -0.2 654,430 - EX28DRAFT_0660 0.25 +0.2 654,431 + EX28DRAFT_0660 0.25 +1.5 654,431 + EX28DRAFT_0660 0.25 +3.8 654,432 - EX28DRAFT_0660 0.25 +0.3 654,432 - EX28DRAFT_0660 0.25 +1.7 654,432 - EX28DRAFT_0660 0.25 +0.1 654,432 - EX28DRAFT_0660 0.25 -0.1 654,510 + EX28DRAFT_0660 0.34 +2.2 654,544 - EX28DRAFT_0660 0.38 -0.6 654,623 + EX28DRAFT_0660 0.47 -0.3 654,624 - EX28DRAFT_0660 0.47 -0.1 654,624 - EX28DRAFT_0660 0.47 -0.2 654,843 - EX28DRAFT_0660 0.72 +0.3 654,992 + EX28DRAFT_0660 0.88 +0.3
Or see this region's nucleotide sequence