Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0574 and EX28DRAFT_0575 overlap by 4 nucleotides EX28DRAFT_0575 and EX28DRAFT_0576 overlap by 1 nucleotides EX28DRAFT_0576 and EX28DRAFT_0577 are separated by 138 nucleotides
EX28DRAFT_0574: EX28DRAFT_0574 - Siderophore synthetase component, at 571,216 to 572,958
_0574
EX28DRAFT_0575: EX28DRAFT_0575 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 572,955 to 573,902
_0575
EX28DRAFT_0576: EX28DRAFT_0576 - Siderophore synthetase component, at 573,902 to 575,644
_0576
EX28DRAFT_0577: EX28DRAFT_0577 - Arabinose efflux permease, at 575,783 to 576,994
_0577
Position (kb) 573
574
575
576 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 573.133 kb on + strand, within EX28DRAFT_0575 at 573.172 kb on + strand, within EX28DRAFT_0575 at 573.287 kb on - strand, within EX28DRAFT_0575 at 573.332 kb on - strand, within EX28DRAFT_0575 at 573.332 kb on - strand, within EX28DRAFT_0575 at 573.359 kb on - strand, within EX28DRAFT_0575 at 573.500 kb on - strand, within EX28DRAFT_0575 at 573.646 kb on + strand, within EX28DRAFT_0575 at 573.717 kb on - strand, within EX28DRAFT_0575 at 573.943 kb on - strand at 574.039 kb on - strand at 574.039 kb on - strand at 574.180 kb on - strand, within EX28DRAFT_0576 at 574.183 kb on - strand, within EX28DRAFT_0576 at 574.343 kb on - strand, within EX28DRAFT_0576 at 574.375 kb on - strand, within EX28DRAFT_0576 at 574.406 kb on + strand, within EX28DRAFT_0576 at 574.407 kb on - strand, within EX28DRAFT_0576 at 574.457 kb on + strand, within EX28DRAFT_0576 at 574.545 kb on - strand, within EX28DRAFT_0576 at 574.801 kb on + strand, within EX28DRAFT_0576 at 574.801 kb on + strand, within EX28DRAFT_0576 at 574.801 kb on + strand, within EX28DRAFT_0576 at 574.828 kb on - strand, within EX28DRAFT_0576 at 575.472 kb on + strand at 575.644 kb on + strand at 575.644 kb on + strand at 575.645 kb on - strand at 575.645 kb on - strand at 575.651 kb on - strand at 575.651 kb on - strand at 575.723 kb on + strand at 575.768 kb on + strand at 575.768 kb on + strand at 575.768 kb on + strand at 575.769 kb on - strand at 575.769 kb on - strand at 575.769 kb on - strand at 575.847 kb on + strand at 575.848 kb on - strand at 575.860 kb on - strand at 575.863 kb on - strand at 576.019 kb on + strand, within EX28DRAFT_0577 at 576.019 kb on + strand, within EX28DRAFT_0577 at 576.020 kb on - strand, within EX28DRAFT_0577 at 576.116 kb on + strand, within EX28DRAFT_0577 at 576.117 kb on - strand, within EX28DRAFT_0577
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 573,133 + EX28DRAFT_0575 0.19 +0.0 573,172 + EX28DRAFT_0575 0.23 -0.6 573,287 - EX28DRAFT_0575 0.35 +3.0 573,332 - EX28DRAFT_0575 0.40 +0.0 573,332 - EX28DRAFT_0575 0.40 -1.0 573,359 - EX28DRAFT_0575 0.43 +1.2 573,500 - EX28DRAFT_0575 0.57 -0.5 573,646 + EX28DRAFT_0575 0.73 +2.3 573,717 - EX28DRAFT_0575 0.80 -0.1 573,943 - -0.8 574,039 - +0.1 574,039 - -0.2 574,180 - EX28DRAFT_0576 0.16 +0.9 574,183 - EX28DRAFT_0576 0.16 -0.2 574,343 - EX28DRAFT_0576 0.25 +0.6 574,375 - EX28DRAFT_0576 0.27 -0.2 574,406 + EX28DRAFT_0576 0.29 -0.1 574,407 - EX28DRAFT_0576 0.29 -0.2 574,457 + EX28DRAFT_0576 0.32 +0.7 574,545 - EX28DRAFT_0576 0.37 +1.8 574,801 + EX28DRAFT_0576 0.52 +0.4 574,801 + EX28DRAFT_0576 0.52 -0.3 574,801 + EX28DRAFT_0576 0.52 +2.2 574,828 - EX28DRAFT_0576 0.53 +1.3 575,472 + -0.0 575,644 + -0.9 575,644 + -0.7 575,645 - +0.3 575,645 - +0.1 575,651 - -0.3 575,651 - -0.4 575,723 + -0.9 575,768 + +0.7 575,768 + +0.0 575,768 + -0.1 575,769 - +0.3 575,769 - -0.6 575,769 - +3.3 575,847 + -0.3 575,848 - +4.6 575,860 - -1.7 575,863 - +0.5 576,019 + EX28DRAFT_0577 0.19 -0.4 576,019 + EX28DRAFT_0577 0.19 -3.3 576,020 - EX28DRAFT_0577 0.20 -0.4 576,116 + EX28DRAFT_0577 0.27 -2.9 576,117 - EX28DRAFT_0577 0.28 -0.6
Or see this region's nucleotide sequence