Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0393 and EX28DRAFT_0394 are separated by 361 nucleotides EX28DRAFT_0394 and EX28DRAFT_0395 overlap by 1 nucleotides EX28DRAFT_0395 and EX28DRAFT_0396 are separated by 16 nucleotides
EX28DRAFT_0393: EX28DRAFT_0393 - sugar efflux transporter, at 366,591 to 367,772
_0393
EX28DRAFT_0394: EX28DRAFT_0394 - Phosphotransferase System HPr (HPr) Family, at 368,134 to 369,264
_0394
EX28DRAFT_0395: EX28DRAFT_0395 - 1-phosphofructokinase, at 369,264 to 370,202
_0395
EX28DRAFT_0396: EX28DRAFT_0396 - PTS system, fructose-specific, IIB component/PTS system, fructose subfamily, IIC component, at 370,219 to 371,904
_0396
Position (kb) 368
369
370 Strain fitness (log2 ratio) -2
-1
0
1 at 367.246 kb on + strand, within EX28DRAFT_0393 at 367.247 kb on - strand, within EX28DRAFT_0393 at 367.434 kb on + strand, within EX28DRAFT_0393 at 367.435 kb on - strand, within EX28DRAFT_0393 at 367.459 kb on + strand, within EX28DRAFT_0393 at 367.460 kb on - strand, within EX28DRAFT_0393 at 367.529 kb on + strand, within EX28DRAFT_0393 at 367.999 kb on - strand at 368.144 kb on + strand at 368.197 kb on - strand at 368.369 kb on - strand, within EX28DRAFT_0394 at 368.454 kb on - strand, within EX28DRAFT_0394 at 368.810 kb on + strand, within EX28DRAFT_0394 at 369.009 kb on - strand, within EX28DRAFT_0394 at 369.013 kb on - strand, within EX28DRAFT_0394 at 369.287 kb on + strand at 369.458 kb on + strand, within EX28DRAFT_0395 at 370.050 kb on + strand, within EX28DRAFT_0395 at 370.051 kb on - strand, within EX28DRAFT_0395 at 370.082 kb on + strand, within EX28DRAFT_0395 at 370.082 kb on + strand, within EX28DRAFT_0395 at 370.083 kb on - strand, within EX28DRAFT_0395 at 370.088 kb on - strand, within EX28DRAFT_0395 at 370.186 kb on + strand at 370.196 kb on + strand at 370.196 kb on + strand at 370.197 kb on - strand at 370.201 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 367,246 + EX28DRAFT_0393 0.55 -0.5 367,247 - EX28DRAFT_0393 0.55 -0.2 367,434 + EX28DRAFT_0393 0.71 +0.1 367,435 - EX28DRAFT_0393 0.71 +1.1 367,459 + EX28DRAFT_0393 0.73 +0.1 367,460 - EX28DRAFT_0393 0.74 -0.1 367,529 + EX28DRAFT_0393 0.79 +0.2 367,999 - -0.4 368,144 + +1.6 368,197 - +0.1 368,369 - EX28DRAFT_0394 0.21 -0.3 368,454 - EX28DRAFT_0394 0.28 -2.3 368,810 + EX28DRAFT_0394 0.60 +0.8 369,009 - EX28DRAFT_0394 0.77 -1.5 369,013 - EX28DRAFT_0394 0.78 -1.3 369,287 + +0.1 369,458 + EX28DRAFT_0395 0.21 -0.1 370,050 + EX28DRAFT_0395 0.84 -0.2 370,051 - EX28DRAFT_0395 0.84 -0.6 370,082 + EX28DRAFT_0395 0.87 -0.2 370,082 + EX28DRAFT_0395 0.87 -1.5 370,083 - EX28DRAFT_0395 0.87 -0.7 370,088 - EX28DRAFT_0395 0.88 +0.3 370,186 + -0.0 370,196 + +0.4 370,196 + +1.0 370,197 - -0.3 370,201 - +1.7
Or see this region's nucleotide sequence