Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0386

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0385 and EX28DRAFT_0386 are separated by 127 nucleotidesEX28DRAFT_0386 and EX28DRAFT_0387 are separated by 415 nucleotides EX28DRAFT_0385: EX28DRAFT_0385 - FOG: EAL domain, at 358,096 to 359,652 _0385 EX28DRAFT_0386: EX28DRAFT_0386 - Cell wall-associated hydrolases (invasion-associated proteins), at 359,780 to 360,349 _0386 EX28DRAFT_0387: EX28DRAFT_0387 - Membrane-associated phospholipid phosphatase, at 360,765 to 361,490 _0387 Position (kb) 359 360 361Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 358.821 kb on - strand, within EX28DRAFT_0385at 358.847 kb on - strand, within EX28DRAFT_0385at 358.876 kb on - strand, within EX28DRAFT_0385at 358.885 kb on - strand, within EX28DRAFT_0385at 358.885 kb on - strand, within EX28DRAFT_0385at 358.886 kb on + strand, within EX28DRAFT_0385at 358.887 kb on - strand, within EX28DRAFT_0385at 358.887 kb on - strand, within EX28DRAFT_0385at 358.889 kb on + strand, within EX28DRAFT_0385at 358.889 kb on + strand, within EX28DRAFT_0385at 358.889 kb on + strand, within EX28DRAFT_0385at 358.890 kb on - strand, within EX28DRAFT_0385at 358.890 kb on - strand, within EX28DRAFT_0385at 358.890 kb on - strand, within EX28DRAFT_0385at 358.982 kb on - strand, within EX28DRAFT_0385at 359.088 kb on + strand, within EX28DRAFT_0385at 359.088 kb on + strand, within EX28DRAFT_0385at 359.314 kb on - strand, within EX28DRAFT_0385at 359.403 kb on + strand, within EX28DRAFT_0385at 359.495 kb on + strand, within EX28DRAFT_0385at 359.495 kb on + strand, within EX28DRAFT_0385at 359.495 kb on + strand, within EX28DRAFT_0385at 359.495 kb on + strand, within EX28DRAFT_0385at 359.495 kb on + strand, within EX28DRAFT_0385at 359.495 kb on + strand, within EX28DRAFT_0385at 359.547 kb on - strandat 359.617 kb on + strandat 359.652 kb on + strandat 359.652 kb on + strandat 359.685 kb on + strandat 359.685 kb on + strandat 359.779 kb on - strandat 359.779 kb on - strandat 359.781 kb on + strandat 359.782 kb on - strandat 359.796 kb on - strandat 359.880 kb on - strand, within EX28DRAFT_0386at 359.880 kb on - strand, within EX28DRAFT_0386at 359.945 kb on + strand, within EX28DRAFT_0386at 359.946 kb on - strand, within EX28DRAFT_0386at 360.003 kb on + strand, within EX28DRAFT_0386at 360.023 kb on + strand, within EX28DRAFT_0386at 360.047 kb on - strand, within EX28DRAFT_0386at 360.053 kb on + strand, within EX28DRAFT_0386at 360.074 kb on - strand, within EX28DRAFT_0386at 360.127 kb on - strand, within EX28DRAFT_0386at 360.137 kb on - strand, within EX28DRAFT_0386at 360.160 kb on + strand, within EX28DRAFT_0386at 360.161 kb on - strand, within EX28DRAFT_0386at 360.165 kb on - strand, within EX28DRAFT_0386at 360.169 kb on + strand, within EX28DRAFT_0386at 360.266 kb on - strand, within EX28DRAFT_0386at 360.268 kb on + strand, within EX28DRAFT_0386at 360.269 kb on - strand, within EX28DRAFT_0386at 360.269 kb on - strand, within EX28DRAFT_0386at 360.269 kb on - strand, within EX28DRAFT_0386at 360.269 kb on - strand, within EX28DRAFT_0386at 360.269 kb on - strand, within EX28DRAFT_0386at 360.319 kb on + strandat 360.320 kb on - strandat 360.322 kb on - strandat 360.385 kb on + strandat 360.386 kb on - strandat 360.393 kb on + strandat 360.393 kb on + strandat 360.421 kb on + strandat 360.499 kb on - strandat 360.499 kb on - strandat 360.596 kb on + strandat 360.767 kb on - strandat 360.774 kb on + strandat 360.819 kb on + strandat 360.820 kb on - strandat 360.999 kb on - strand, within EX28DRAFT_0387at 361.096 kb on + strand, within EX28DRAFT_0387at 361.188 kb on + strand, within EX28DRAFT_0387at 361.188 kb on + strand, within EX28DRAFT_0387at 361.305 kb on - strand, within EX28DRAFT_0387

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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358,821 - EX28DRAFT_0385 0.47 -2.4
358,847 - EX28DRAFT_0385 0.48 +0.3
358,876 - EX28DRAFT_0385 0.50 +0.1
358,885 - EX28DRAFT_0385 0.51 -0.2
358,885 - EX28DRAFT_0385 0.51 -0.4
358,886 + EX28DRAFT_0385 0.51 +0.7
358,887 - EX28DRAFT_0385 0.51 +1.1
358,887 - EX28DRAFT_0385 0.51 -1.8
358,889 + EX28DRAFT_0385 0.51 +0.0
358,889 + EX28DRAFT_0385 0.51 -0.2
358,889 + EX28DRAFT_0385 0.51 -0.3
358,890 - EX28DRAFT_0385 0.51 +0.2
358,890 - EX28DRAFT_0385 0.51 +0.5
358,890 - EX28DRAFT_0385 0.51 +0.2
358,982 - EX28DRAFT_0385 0.57 +0.2
359,088 + EX28DRAFT_0385 0.64 +0.2
359,088 + EX28DRAFT_0385 0.64 +0.1
359,314 - EX28DRAFT_0385 0.78 -0.2
359,403 + EX28DRAFT_0385 0.84 +0.2
359,495 + EX28DRAFT_0385 0.90 -1.5
359,495 + EX28DRAFT_0385 0.90 -0.1
359,495 + EX28DRAFT_0385 0.90 +0.9
359,495 + EX28DRAFT_0385 0.90 -0.1
359,495 + EX28DRAFT_0385 0.90 +4.7
359,495 + EX28DRAFT_0385 0.90 -1.6
359,547 - +1.8
359,617 + -0.2
359,652 + -1.2
359,652 + +0.0
359,685 + +3.8
359,685 + -0.4
359,779 - +0.3
359,779 - +0.3
359,781 + -0.4
359,782 - +0.1
359,796 - -0.8
359,880 - EX28DRAFT_0386 0.18 -1.2
359,880 - EX28DRAFT_0386 0.18 +0.4
359,945 + EX28DRAFT_0386 0.29 -2.4
359,946 - EX28DRAFT_0386 0.29 -0.6
360,003 + EX28DRAFT_0386 0.39 -0.4
360,023 + EX28DRAFT_0386 0.43 -4.0
360,047 - EX28DRAFT_0386 0.47 -0.9
360,053 + EX28DRAFT_0386 0.48 -1.7
360,074 - EX28DRAFT_0386 0.52 -1.9
360,127 - EX28DRAFT_0386 0.61 -0.2
360,137 - EX28DRAFT_0386 0.63 -0.0
360,160 + EX28DRAFT_0386 0.67 +0.5
360,161 - EX28DRAFT_0386 0.67 -0.7
360,165 - EX28DRAFT_0386 0.68 +1.6
360,169 + EX28DRAFT_0386 0.68 +0.1
360,266 - EX28DRAFT_0386 0.85 -0.7
360,268 + EX28DRAFT_0386 0.86 -4.4
360,269 - EX28DRAFT_0386 0.86 -1.6
360,269 - EX28DRAFT_0386 0.86 -0.2
360,269 - EX28DRAFT_0386 0.86 +0.1
360,269 - EX28DRAFT_0386 0.86 -0.9
360,269 - EX28DRAFT_0386 0.86 -0.8
360,319 + -2.5
360,320 - -0.9
360,322 - +0.7
360,385 + -2.2
360,386 - -0.3
360,393 + +0.0
360,393 + -2.0
360,421 + -1.1
360,499 - +0.1
360,499 - +0.2
360,596 + +0.0
360,767 - -0.1
360,774 + -0.3
360,819 + +0.4
360,820 - +3.4
360,999 - EX28DRAFT_0387 0.32 +0.1
361,096 + EX28DRAFT_0387 0.46 +0.6
361,188 + EX28DRAFT_0387 0.58 +0.3
361,188 + EX28DRAFT_0387 0.58 -0.5
361,305 - EX28DRAFT_0387 0.74 -0.1

Or see this region's nucleotide sequence