Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15115 and ABID97_RS15120 are separated by 143 nucleotides ABID97_RS15120 and ABID97_RS15125 are separated by 12 nucleotides ABID97_RS15125 and ABID97_RS15130 are separated by 25 nucleotides ABID97_RS15130 and ABID97_RS15135 are separated by 2 nucleotides ABID97_RS15135 and ABID97_RS15140 are separated by 13 nucleotides
ABID97_RS15115: ABID97_RS15115 - trypsin-like peptidase domain-containing protein, at 3,135,073 to 3,135,990
_RS15115
ABID97_RS15120: ABID97_RS15120 - type II toxin-antitoxin system HigB family toxin, at 3,136,134 to 3,136,445
_RS15120
ABID97_RS15125: ABID97_RS15125 - transcriptional regulator, at 3,136,458 to 3,136,841
_RS15125
ABID97_RS15130: ABID97_RS15130 - contractile injection system protein, VgrG/Pvc8 family, at 3,136,867 to 3,137,925
_RS15130
ABID97_RS15135: ABID97_RS15135 - phage tail protein, at 3,137,928 to 3,138,353
_RS15135
ABID97_RS15140: ABID97_RS15140 - phage tail tape measure protein, at 3,138,367 to 3,141,051
_RS15140
Position (kb) 3136
3137
3138 Strain fitness (log2 ratio) -1
0
1 at 3135.989 kb on - strand at 3136.142 kb on - strand at 3136.356 kb on + strand, within ABID97_RS15120 at 3136.368 kb on + strand, within ABID97_RS15120 at 3136.404 kb on + strand, within ABID97_RS15120 at 3136.405 kb on - strand, within ABID97_RS15120 at 3136.940 kb on + strand at 3136.960 kb on - strand at 3137.246 kb on + strand, within ABID97_RS15130 at 3137.867 kb on + strand at 3137.867 kb on + strand at 3138.305 kb on - strand, within ABID97_RS15135
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 3,135,989 - +1.4 3,136,142 - -0.0 3,136,356 + ABID97_RS15120 0.71 +0.3 3,136,368 + ABID97_RS15120 0.75 -0.0 3,136,404 + ABID97_RS15120 0.87 +1.1 3,136,405 - ABID97_RS15120 0.87 -0.1 3,136,940 + -0.2 3,136,960 - +0.1 3,137,246 + ABID97_RS15130 0.36 -0.1 3,137,867 + -0.2 3,137,867 + +0.1 3,138,305 - ABID97_RS15135 0.88 +0.2
Or see this region's nucleotide sequence