Experiment: KB with Ampicillin 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4799 and Psyr_4800 overlap by 4 nucleotides Psyr_4800 and Psyr_4801 are separated by 253 nucleotides
Psyr_4799: Psyr_4799 - Heavy metal sensor kinase, at 5,688,372 to 5,689,763
_4799
Psyr_4800: Psyr_4800 - Heavy metal response regulator, at 5,689,760 to 5,690,434
_4800
Psyr_4801: Psyr_4801 - Outer membrane efflux protein, at 5,690,688 to 5,691,914
_4801
Position (kb) 5689
5690
5691 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5688.931 kb on + strand, within Psyr_4799 at 5688.931 kb on + strand, within Psyr_4799 at 5688.931 kb on + strand, within Psyr_4799 at 5688.932 kb on - strand, within Psyr_4799 at 5688.932 kb on - strand, within Psyr_4799 at 5689.273 kb on + strand, within Psyr_4799 at 5689.274 kb on - strand, within Psyr_4799 at 5689.274 kb on - strand, within Psyr_4799 at 5689.274 kb on - strand, within Psyr_4799 at 5689.274 kb on - strand, within Psyr_4799 at 5689.455 kb on + strand, within Psyr_4799 at 5689.455 kb on + strand, within Psyr_4799 at 5689.455 kb on + strand, within Psyr_4799 at 5689.455 kb on + strand, within Psyr_4799 at 5689.455 kb on + strand, within Psyr_4799 at 5689.455 kb on + strand, within Psyr_4799 at 5689.456 kb on - strand, within Psyr_4799 at 5689.456 kb on - strand, within Psyr_4799 at 5689.456 kb on - strand, within Psyr_4799 at 5689.456 kb on - strand, within Psyr_4799 at 5689.461 kb on - strand, within Psyr_4799 at 5689.647 kb on + strand at 5689.647 kb on + strand at 5689.647 kb on + strand at 5689.647 kb on + strand at 5689.647 kb on + strand at 5689.647 kb on + strand at 5689.647 kb on + strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.648 kb on - strand at 5689.673 kb on + strand at 5689.674 kb on - strand at 5689.674 kb on - strand at 5689.674 kb on - strand at 5689.674 kb on - strand at 5689.674 kb on - strand at 5689.674 kb on - strand at 5689.674 kb on - strand at 5689.674 kb on - strand at 5689.676 kb on - strand at 5689.676 kb on - strand at 5689.676 kb on - strand at 5689.779 kb on - strand at 5690.145 kb on + strand, within Psyr_4800 at 5690.146 kb on - strand, within Psyr_4800 at 5690.146 kb on - strand, within Psyr_4800 at 5690.301 kb on + strand, within Psyr_4800 at 5690.301 kb on + strand, within Psyr_4800 at 5690.322 kb on + strand, within Psyr_4800 at 5690.322 kb on + strand, within Psyr_4800 at 5690.322 kb on + strand, within Psyr_4800 at 5690.322 kb on + strand, within Psyr_4800 at 5690.322 kb on + strand, within Psyr_4800 at 5690.322 kb on + strand, within Psyr_4800 at 5690.323 kb on - strand, within Psyr_4800 at 5690.323 kb on - strand, within Psyr_4800 at 5690.323 kb on - strand, within Psyr_4800 at 5690.323 kb on - strand, within Psyr_4800 at 5690.324 kb on + strand, within Psyr_4800 at 5690.325 kb on - strand, within Psyr_4800 at 5690.325 kb on - strand, within Psyr_4800 at 5690.325 kb on - strand, within Psyr_4800 at 5690.325 kb on - strand, within Psyr_4800 at 5690.391 kb on + strand at 5690.391 kb on + strand at 5690.391 kb on + strand at 5690.392 kb on - strand at 5690.392 kb on - strand at 5690.392 kb on - strand at 5690.392 kb on - strand at 5690.417 kb on + strand at 5690.418 kb on - strand at 5690.420 kb on + strand at 5690.420 kb on + strand at 5690.420 kb on + strand at 5690.421 kb on - strand at 5690.421 kb on - strand at 5690.421 kb on - strand at 5690.421 kb on - strand at 5690.483 kb on + strand at 5690.483 kb on + strand at 5690.484 kb on - strand at 5690.523 kb on + strand at 5690.546 kb on + strand at 5690.547 kb on - strand at 5690.560 kb on + strand at 5690.561 kb on - strand at 5690.561 kb on - strand at 5690.603 kb on + strand at 5690.604 kb on - strand at 5690.604 kb on - strand at 5690.604 kb on - strand at 5690.604 kb on - strand at 5690.604 kb on - strand at 5690.648 kb on + strand at 5690.648 kb on + strand at 5690.648 kb on + strand at 5690.648 kb on + strand at 5690.648 kb on + strand at 5690.649 kb on - strand at 5690.649 kb on - strand at 5691.066 kb on + strand, within Psyr_4801 at 5691.067 kb on - strand, within Psyr_4801 at 5691.318 kb on + strand, within Psyr_4801 at 5691.318 kb on + strand, within Psyr_4801 at 5691.318 kb on + strand, within Psyr_4801 at 5691.319 kb on - strand, within Psyr_4801 at 5691.319 kb on - strand, within Psyr_4801
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml remove 5,688,931 + Psyr_4799 0.40 -1.5 5,688,931 + Psyr_4799 0.40 -0.9 5,688,931 + Psyr_4799 0.40 -2.3 5,688,932 - Psyr_4799 0.40 -1.4 5,688,932 - Psyr_4799 0.40 +1.0 5,689,273 + Psyr_4799 0.65 +1.3 5,689,274 - Psyr_4799 0.65 +0.2 5,689,274 - Psyr_4799 0.65 +0.8 5,689,274 - Psyr_4799 0.65 +1.1 5,689,274 - Psyr_4799 0.65 -0.1 5,689,455 + Psyr_4799 0.78 +0.1 5,689,455 + Psyr_4799 0.78 -0.1 5,689,455 + Psyr_4799 0.78 +0.1 5,689,455 + Psyr_4799 0.78 +2.1 5,689,455 + Psyr_4799 0.78 +0.2 5,689,455 + Psyr_4799 0.78 +0.5 5,689,456 - Psyr_4799 0.78 -0.3 5,689,456 - Psyr_4799 0.78 +0.8 5,689,456 - Psyr_4799 0.78 -0.7 5,689,456 - Psyr_4799 0.78 -0.5 5,689,461 - Psyr_4799 0.78 +0.4 5,689,647 + -0.5 5,689,647 + +0.5 5,689,647 + -1.3 5,689,647 + -0.6 5,689,647 + +1.1 5,689,647 + +0.7 5,689,647 + +0.5 5,689,648 - -0.4 5,689,648 - -0.5 5,689,648 - +0.4 5,689,648 - +0.4 5,689,648 - +1.0 5,689,648 - +0.1 5,689,648 - -0.4 5,689,648 - +0.1 5,689,648 - -1.3 5,689,648 - +0.3 5,689,648 - +0.1 5,689,648 - -0.1 5,689,648 - -0.1 5,689,648 - +0.4 5,689,648 - +1.4 5,689,673 + +1.1 5,689,674 - +0.4 5,689,674 - +1.1 5,689,674 - +0.1 5,689,674 - -1.3 5,689,674 - -0.6 5,689,674 - +0.2 5,689,674 - -0.0 5,689,674 - +0.2 5,689,676 - -1.7 5,689,676 - -0.4 5,689,676 - +1.1 5,689,779 - +0.5 5,690,145 + Psyr_4800 0.57 -1.2 5,690,146 - Psyr_4800 0.57 -0.5 5,690,146 - Psyr_4800 0.57 -1.3 5,690,301 + Psyr_4800 0.80 -0.9 5,690,301 + Psyr_4800 0.80 +0.2 5,690,322 + Psyr_4800 0.83 +0.1 5,690,322 + Psyr_4800 0.83 -2.0 5,690,322 + Psyr_4800 0.83 -1.5 5,690,322 + Psyr_4800 0.83 +0.4 5,690,322 + Psyr_4800 0.83 -0.7 5,690,322 + Psyr_4800 0.83 -0.4 5,690,323 - Psyr_4800 0.83 +0.7 5,690,323 - Psyr_4800 0.83 +0.9 5,690,323 - Psyr_4800 0.83 -0.1 5,690,323 - Psyr_4800 0.83 +0.5 5,690,324 + Psyr_4800 0.84 -1.5 5,690,325 - Psyr_4800 0.84 +0.1 5,690,325 - Psyr_4800 0.84 -1.3 5,690,325 - Psyr_4800 0.84 -0.9 5,690,325 - Psyr_4800 0.84 +0.7 5,690,391 + -1.0 5,690,391 + -0.2 5,690,391 + +0.7 5,690,392 - -0.9 5,690,392 - +0.8 5,690,392 - -0.9 5,690,392 - -1.4 5,690,417 + +0.7 5,690,418 - +0.1 5,690,420 + +1.4 5,690,420 + -0.8 5,690,420 + +1.3 5,690,421 - +0.7 5,690,421 - -0.8 5,690,421 - -0.9 5,690,421 - +0.7 5,690,483 + -1.4 5,690,483 + -0.7 5,690,484 - +0.5 5,690,523 + +1.1 5,690,546 + +0.8 5,690,547 - +0.4 5,690,560 + -0.8 5,690,561 - -1.3 5,690,561 - +0.2 5,690,603 + +1.2 5,690,604 - +0.3 5,690,604 - -0.1 5,690,604 - -1.5 5,690,604 - -0.1 5,690,604 - -0.1 5,690,648 + -0.3 5,690,648 + +1.1 5,690,648 + +0.4 5,690,648 + +0.6 5,690,648 + +1.1 5,690,649 - -0.4 5,690,649 - -0.5 5,691,066 + Psyr_4801 0.31 +0.5 5,691,067 - Psyr_4801 0.31 -1.3 5,691,318 + Psyr_4801 0.51 +0.6 5,691,318 + Psyr_4801 0.51 +0.7 5,691,318 + Psyr_4801 0.51 -2.3 5,691,319 - Psyr_4801 0.51 +2.1 5,691,319 - Psyr_4801 0.51 +0.4
Or see this region's nucleotide sequence