Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3344

Experiment: KB with Ampicillin 15.6 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3343 and Psyr_3344 are separated by 420 nucleotidesPsyr_3344 and Psyr_3345 are separated by 215 nucleotides Psyr_3343: Psyr_3343 - GCN5-related N-acetyltransferase, at 3,998,323 to 3,998,820 _3343 Psyr_3344: Psyr_3344 - conserved hypothetical protein, at 3,999,241 to 4,000,131 _3344 Psyr_3345: Psyr_3345 - TonB-dependent siderophore receptor, at 4,000,347 to 4,002,464 _3345 Position (kb) 3999 4000 4001Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3998.325 kb on - strandat 3998.334 kb on + strandat 3998.334 kb on + strandat 3998.334 kb on + strandat 3998.334 kb on + strandat 3998.334 kb on + strandat 3998.334 kb on + strandat 3998.334 kb on + strandat 3998.334 kb on + strandat 3998.334 kb on + strandat 3998.335 kb on - strandat 3998.335 kb on - strandat 3998.335 kb on - strandat 3998.335 kb on - strandat 3998.335 kb on - strandat 3998.639 kb on - strand, within Psyr_3343at 3998.720 kb on + strand, within Psyr_3343at 3998.741 kb on + strand, within Psyr_3343at 3998.741 kb on + strand, within Psyr_3343at 3998.741 kb on + strand, within Psyr_3343at 3998.741 kb on + strand, within Psyr_3343at 3998.741 kb on + strand, within Psyr_3343at 3998.741 kb on + strand, within Psyr_3343at 3998.741 kb on + strand, within Psyr_3343at 3998.741 kb on + strand, within Psyr_3343at 3998.741 kb on + strand, within Psyr_3343at 3998.741 kb on + strand, within Psyr_3343at 3998.741 kb on + strand, within Psyr_3343at 3998.741 kb on + strand, within Psyr_3343at 3998.741 kb on + strand, within Psyr_3343at 3998.742 kb on - strand, within Psyr_3343at 3998.742 kb on - strand, within Psyr_3343at 3998.742 kb on - strand, within Psyr_3343at 3998.742 kb on - strand, within Psyr_3343at 3998.742 kb on - strand, within Psyr_3343at 3998.742 kb on - strand, within Psyr_3343at 3998.742 kb on - strand, within Psyr_3343at 3998.742 kb on - strand, within Psyr_3343at 3998.742 kb on - strand, within Psyr_3343at 3998.742 kb on - strand, within Psyr_3343at 3998.821 kb on - strandat 3998.859 kb on + strandat 3998.860 kb on - strandat 3998.861 kb on + strandat 3998.861 kb on + strandat 3998.861 kb on + strandat 3998.861 kb on + strandat 3998.861 kb on + strandat 3998.862 kb on - strandat 3998.862 kb on - strandat 3998.862 kb on - strandat 3998.862 kb on - strandat 3998.862 kb on - strandat 3998.862 kb on - strandat 3998.931 kb on - strandat 3998.975 kb on + strandat 3999.041 kb on - strandat 3999.075 kb on + strandat 3999.075 kb on + strandat 3999.076 kb on - strandat 3999.076 kb on - strandat 3999.076 kb on - strandat 3999.076 kb on - strandat 3999.076 kb on - strandat 3999.079 kb on + strandat 3999.090 kb on + strandat 3999.090 kb on + strandat 3999.091 kb on - strandat 3999.098 kb on - strandat 3999.155 kb on + strandat 3999.156 kb on - strandat 3999.156 kb on - strandat 3999.177 kb on + strandat 3999.186 kb on + strandat 3999.186 kb on + strandat 3999.186 kb on + strandat 3999.186 kb on + strandat 3999.187 kb on - strandat 3999.187 kb on - strandat 3999.187 kb on - strandat 3999.381 kb on + strand, within Psyr_3344at 3999.382 kb on - strand, within Psyr_3344at 3999.382 kb on - strand, within Psyr_3344at 3999.460 kb on + strand, within Psyr_3344at 3999.460 kb on + strand, within Psyr_3344at 3999.460 kb on + strand, within Psyr_3344at 3999.460 kb on + strand, within Psyr_3344at 3999.460 kb on + strand, within Psyr_3344at 3999.461 kb on - strand, within Psyr_3344at 3999.461 kb on - strand, within Psyr_3344at 3999.461 kb on - strand, within Psyr_3344at 3999.461 kb on - strand, within Psyr_3344at 3999.461 kb on - strand, within Psyr_3344at 3999.599 kb on + strand, within Psyr_3344at 3999.599 kb on + strand, within Psyr_3344at 3999.599 kb on + strand, within Psyr_3344at 3999.599 kb on + strand, within Psyr_3344at 3999.599 kb on + strand, within Psyr_3344at 3999.599 kb on + strand, within Psyr_3344at 3999.599 kb on + strand, within Psyr_3344at 3999.599 kb on + strand, within Psyr_3344at 3999.599 kb on + strand, within Psyr_3344at 3999.599 kb on + strand, within Psyr_3344at 3999.599 kb on + strand, within Psyr_3344at 3999.599 kb on + strand, within Psyr_3344at 3999.600 kb on - strand, within Psyr_3344at 3999.600 kb on - strand, within Psyr_3344at 3999.600 kb on - strand, within Psyr_3344at 3999.600 kb on - strand, within Psyr_3344at 3999.600 kb on - strand, within Psyr_3344at 3999.600 kb on - strand, within Psyr_3344at 3999.600 kb on - strand, within Psyr_3344at 3999.600 kb on - strand, within Psyr_3344at 3999.600 kb on - strand, within Psyr_3344at 3999.600 kb on - strand, within Psyr_3344at 3999.600 kb on - strand, within Psyr_3344at 3999.601 kb on + strand, within Psyr_3344at 3999.601 kb on + strand, within Psyr_3344at 3999.601 kb on + strand, within Psyr_3344at 3999.601 kb on + strand, within Psyr_3344at 3999.601 kb on + strand, within Psyr_3344at 3999.602 kb on - strand, within Psyr_3344at 3999.670 kb on + strand, within Psyr_3344at 3999.670 kb on + strand, within Psyr_3344at 3999.670 kb on + strand, within Psyr_3344at 3999.670 kb on + strand, within Psyr_3344at 3999.892 kb on - strand, within Psyr_3344at 3999.928 kb on + strand, within Psyr_3344at 3999.928 kb on + strand, within Psyr_3344at 3999.928 kb on + strand, within Psyr_3344at 3999.929 kb on - strand, within Psyr_3344at 3999.929 kb on - strand, within Psyr_3344at 3999.929 kb on - strand, within Psyr_3344at 3999.929 kb on - strand, within Psyr_3344at 3999.933 kb on - strand, within Psyr_3344at 3999.989 kb on + strand, within Psyr_3344at 3999.990 kb on - strand, within Psyr_3344at 4000.011 kb on + strand, within Psyr_3344at 4000.011 kb on + strand, within Psyr_3344at 4000.011 kb on + strand, within Psyr_3344at 4000.153 kb on + strandat 4000.154 kb on - strandat 4000.211 kb on - strandat 4000.314 kb on + strandat 4000.315 kb on - strandat 4000.321 kb on - strandat 4000.332 kb on - strandat 4000.332 kb on - strandat 4000.504 kb on - strandat 4000.504 kb on - strandat 4000.544 kb on - strandat 4000.602 kb on + strand, within Psyr_3345at 4000.602 kb on + strand, within Psyr_3345at 4000.603 kb on - strand, within Psyr_3345at 4000.662 kb on - strand, within Psyr_3345at 4000.872 kb on + strand, within Psyr_3345at 4000.872 kb on + strand, within Psyr_3345at 4000.872 kb on + strand, within Psyr_3345at 4000.872 kb on + strand, within Psyr_3345at 4000.872 kb on + strand, within Psyr_3345at 4000.872 kb on + strand, within Psyr_3345at 4000.873 kb on - strand, within Psyr_3345at 4000.873 kb on - strand, within Psyr_3345at 4000.906 kb on - strand, within Psyr_3345at 4001.004 kb on + strand, within Psyr_3345at 4001.012 kb on + strand, within Psyr_3345at 4001.013 kb on - strand, within Psyr_3345at 4001.013 kb on - strand, within Psyr_3345at 4001.016 kb on + strand, within Psyr_3345at 4001.016 kb on + strand, within Psyr_3345at 4001.016 kb on + strand, within Psyr_3345at 4001.016 kb on + strand, within Psyr_3345at 4001.017 kb on - strand, within Psyr_3345at 4001.017 kb on - strand, within Psyr_3345at 4001.097 kb on + strand, within Psyr_3345at 4001.097 kb on + strand, within Psyr_3345at 4001.097 kb on + strand, within Psyr_3345at 4001.098 kb on - strand, within Psyr_3345at 4001.107 kb on - strand, within Psyr_3345at 4001.107 kb on - strand, within Psyr_3345

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml
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3,998,325 - +0.2
3,998,334 + -0.6
3,998,334 + -1.3
3,998,334 + +0.6
3,998,334 + +0.3
3,998,334 + -0.8
3,998,334 + +0.6
3,998,334 + +0.1
3,998,334 + -0.5
3,998,334 + +1.1
3,998,335 - -0.8
3,998,335 - +0.8
3,998,335 - -1.6
3,998,335 - +1.6
3,998,335 - -0.9
3,998,639 - Psyr_3343 0.63 +0.2
3,998,720 + Psyr_3343 0.80 -0.4
3,998,741 + Psyr_3343 0.84 -0.4
3,998,741 + Psyr_3343 0.84 -0.5
3,998,741 + Psyr_3343 0.84 -2.2
3,998,741 + Psyr_3343 0.84 -1.2
3,998,741 + Psyr_3343 0.84 -0.2
3,998,741 + Psyr_3343 0.84 +0.6
3,998,741 + Psyr_3343 0.84 -0.6
3,998,741 + Psyr_3343 0.84 -0.6
3,998,741 + Psyr_3343 0.84 +2.6
3,998,741 + Psyr_3343 0.84 +0.2
3,998,741 + Psyr_3343 0.84 -1.7
3,998,741 + Psyr_3343 0.84 -0.4
3,998,741 + Psyr_3343 0.84 -0.1
3,998,742 - Psyr_3343 0.84 +0.8
3,998,742 - Psyr_3343 0.84 -1.9
3,998,742 - Psyr_3343 0.84 +0.2
3,998,742 - Psyr_3343 0.84 -0.1
3,998,742 - Psyr_3343 0.84 -0.4
3,998,742 - Psyr_3343 0.84 +0.6
3,998,742 - Psyr_3343 0.84 +1.6
3,998,742 - Psyr_3343 0.84 +0.6
3,998,742 - Psyr_3343 0.84 +0.4
3,998,742 - Psyr_3343 0.84 -0.9
3,998,821 - +0.3
3,998,859 + -0.8
3,998,860 - +0.6
3,998,861 + +0.3
3,998,861 + -0.7
3,998,861 + -0.6
3,998,861 + -0.2
3,998,861 + +2.1
3,998,862 - +1.4
3,998,862 - -0.2
3,998,862 - -1.7
3,998,862 - +0.6
3,998,862 - -0.9
3,998,862 - -0.7
3,998,931 - +0.6
3,998,975 + -3.3
3,999,041 - +0.3
3,999,075 + -0.2
3,999,075 + -1.9
3,999,076 - -0.4
3,999,076 - +1.6
3,999,076 - -0.9
3,999,076 - -1.1
3,999,076 - -0.4
3,999,079 + +0.1
3,999,090 + +0.1
3,999,090 + +0.4
3,999,091 - +0.2
3,999,098 - -0.0
3,999,155 + +1.8
3,999,156 - +0.8
3,999,156 - +2.4
3,999,177 + -0.4
3,999,186 + -1.9
3,999,186 + -0.9
3,999,186 + +0.4
3,999,186 + +0.4
3,999,187 - -0.1
3,999,187 - -0.5
3,999,187 - +0.8
3,999,381 + Psyr_3344 0.16 +0.2
3,999,382 - Psyr_3344 0.16 +0.6
3,999,382 - Psyr_3344 0.16 -0.2
3,999,460 + Psyr_3344 0.25 -0.1
3,999,460 + Psyr_3344 0.25 +0.6
3,999,460 + Psyr_3344 0.25 -0.7
3,999,460 + Psyr_3344 0.25 -0.4
3,999,460 + Psyr_3344 0.25 -0.3
3,999,461 - Psyr_3344 0.25 -0.7
3,999,461 - Psyr_3344 0.25 +0.1
3,999,461 - Psyr_3344 0.25 +1.0
3,999,461 - Psyr_3344 0.25 -2.9
3,999,461 - Psyr_3344 0.25 +3.2
3,999,599 + Psyr_3344 0.40 -2.2
3,999,599 + Psyr_3344 0.40 +0.6
3,999,599 + Psyr_3344 0.40 +0.1
3,999,599 + Psyr_3344 0.40 -0.4
3,999,599 + Psyr_3344 0.40 -0.4
3,999,599 + Psyr_3344 0.40 -1.5
3,999,599 + Psyr_3344 0.40 +0.8
3,999,599 + Psyr_3344 0.40 +1.2
3,999,599 + Psyr_3344 0.40 -0.1
3,999,599 + Psyr_3344 0.40 +1.6
3,999,599 + Psyr_3344 0.40 -1.4
3,999,599 + Psyr_3344 0.40 -1.5
3,999,600 - Psyr_3344 0.40 +1.1
3,999,600 - Psyr_3344 0.40 -0.8
3,999,600 - Psyr_3344 0.40 -1.0
3,999,600 - Psyr_3344 0.40 -2.7
3,999,600 - Psyr_3344 0.40 -0.0
3,999,600 - Psyr_3344 0.40 -0.2
3,999,600 - Psyr_3344 0.40 +0.5
3,999,600 - Psyr_3344 0.40 +0.6
3,999,600 - Psyr_3344 0.40 +0.4
3,999,600 - Psyr_3344 0.40 -0.9
3,999,600 - Psyr_3344 0.40 +0.4
3,999,601 + Psyr_3344 0.40 -1.5
3,999,601 + Psyr_3344 0.40 +0.4
3,999,601 + Psyr_3344 0.40 -0.6
3,999,601 + Psyr_3344 0.40 -0.9
3,999,601 + Psyr_3344 0.40 +0.1
3,999,602 - Psyr_3344 0.41 +0.6
3,999,670 + Psyr_3344 0.48 -0.9
3,999,670 + Psyr_3344 0.48 +0.1
3,999,670 + Psyr_3344 0.48 +0.2
3,999,670 + Psyr_3344 0.48 -1.1
3,999,892 - Psyr_3344 0.73 +0.6
3,999,928 + Psyr_3344 0.77 -0.4
3,999,928 + Psyr_3344 0.77 -1.9
3,999,928 + Psyr_3344 0.77 -0.4
3,999,929 - Psyr_3344 0.77 +0.4
3,999,929 - Psyr_3344 0.77 +1.0
3,999,929 - Psyr_3344 0.77 -1.5
3,999,929 - Psyr_3344 0.77 +0.6
3,999,933 - Psyr_3344 0.78 +0.2
3,999,989 + Psyr_3344 0.84 -0.4
3,999,990 - Psyr_3344 0.84 +1.3
4,000,011 + Psyr_3344 0.86 -0.6
4,000,011 + Psyr_3344 0.86 +0.6
4,000,011 + Psyr_3344 0.86 -1.4
4,000,153 + +0.1
4,000,154 - +0.1
4,000,211 - +0.1
4,000,314 + +0.5
4,000,315 - -1.7
4,000,321 - +0.2
4,000,332 - -0.2
4,000,332 - +2.2
4,000,504 - -0.7
4,000,504 - +1.6
4,000,544 - +0.2
4,000,602 + Psyr_3345 0.12 +0.1
4,000,602 + Psyr_3345 0.12 +0.6
4,000,603 - Psyr_3345 0.12 -0.2
4,000,662 - Psyr_3345 0.15 +0.9
4,000,872 + Psyr_3345 0.25 +0.8
4,000,872 + Psyr_3345 0.25 -0.3
4,000,872 + Psyr_3345 0.25 +0.9
4,000,872 + Psyr_3345 0.25 +1.1
4,000,872 + Psyr_3345 0.25 -1.0
4,000,872 + Psyr_3345 0.25 -0.2
4,000,873 - Psyr_3345 0.25 -1.4
4,000,873 - Psyr_3345 0.25 -0.2
4,000,906 - Psyr_3345 0.26 -0.5
4,001,004 + Psyr_3345 0.31 -2.2
4,001,012 + Psyr_3345 0.31 -0.2
4,001,013 - Psyr_3345 0.31 -0.7
4,001,013 - Psyr_3345 0.31 -0.1
4,001,016 + Psyr_3345 0.32 +0.3
4,001,016 + Psyr_3345 0.32 -0.9
4,001,016 + Psyr_3345 0.32 -0.6
4,001,016 + Psyr_3345 0.32 -0.4
4,001,017 - Psyr_3345 0.32 +0.6
4,001,017 - Psyr_3345 0.32 -0.2
4,001,097 + Psyr_3345 0.35 -0.6
4,001,097 + Psyr_3345 0.35 -1.2
4,001,097 + Psyr_3345 0.35 -1.2
4,001,098 - Psyr_3345 0.35 +0.4
4,001,107 - Psyr_3345 0.36 +0.6
4,001,107 - Psyr_3345 0.36 -0.7

Or see this region's nucleotide sequence